Literature DB >> 24109313

1-(2-Chloro-phen-yl)-3-(2-ethyl-hexa-noyl)thio-urea.

R Santhakumari1, S Selvanayagam, K Ramamurthi, N Radha, Bohari M Yamin.   

Abstract

In the title compound, C15H21ClN2OS, the central chromophore moiety (C2N2OS) is approximately planar, with a maximum deviation of -0.027 (1) Å, and is oriented at a dihedral angle of 86.7 (1)° with respect to the chloro-phenyl ring. An intra-molecular N-H⋯O hydrogen bond stabilizes the mol-ecular conformation. In the crystal, mol-ecules associate via N-H⋯S hydrogen bonds, forming inversion dimers with motif R 2 (2)(8). These dimers are further connected by N-H⋯O hydrogen bonds, forming R 2 (2)(12) dimers. As a result, hydrogen-bonded chains running along [110] are formed. C-H⋯S inter-actions also occur. The terminal two C atoms of the butyl chain are disordered over two positions with an occupancy ratio of 0.54:0.46.

Entities:  

Year:  2013        PMID: 24109313      PMCID: PMC3793726          DOI: 10.1107/S160053681301828X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the biological activity of thio­urea derivatives, see: Yang et al. (2012 ▶); Wu et al. (2012 ▶); Abbas et al. (2013 ▶); Ryu et al. (2012 ▶).

Experimental

Crystal data

C15H21ClN2OS M = 312.85 Triclinic, a = 7.264 (5) Å b = 10.056 (7) Å c = 11.935 (9) Å α = 97.748 (17)° β = 98.100 (17)° γ = 103.72 (2)° V = 825.5 (11) Å3 Z = 2 Mo Kα radiation μ = 0.36 mm−1 T = 292 K 0.22 × 0.20 × 0.18 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 8136 measured reflections 2878 independent reflections 1700 reflections with I > 2σ(I) R int = 0.067

Refinement

R[F 2 > 2σ(F 2)] = 0.076 wR(F 2) = 0.230 S = 1.02 2878 reflections 200 parameters 4 restraints H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.26 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681301828X/bt6917sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301828X/bt6917Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301828X/bt6917Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H21ClN2OSZ = 2
Mr = 312.85F(000) = 332
Triclinic, P1Dx = 1.259 Mg m3
a = 7.264 (5) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.056 (7) ÅCell parameters from 6222 reflections
c = 11.935 (9) Åθ = 2.3–24.8°
α = 97.748 (17)°µ = 0.36 mm1
β = 98.100 (17)°T = 292 K
γ = 103.72 (2)°Block, colourless
V = 825.5 (11) Å30.22 × 0.20 × 0.18 mm
Bruker SMART APEX CCD area-detector diffractometerRint = 0.067
Radiation source: fine-focus sealed tubeθmax = 25.0°, θmin = 1.8°
ω scansh = −8→8
8136 measured reflectionsk = −11→11
2878 independent reflectionsl = −14→14
1700 reflections with I > 2σ(I)
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.076H-atom parameters constrained
wR(F2) = 0.230w = 1/[σ2(Fo2) + (0.125P)2] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max < 0.001
2878 reflectionsΔρmax = 0.37 e Å3
200 parametersΔρmin = −0.26 e Å3
4 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Cl10.0875 (2)0.56892 (16)−0.31845 (12)0.0787 (5)
S10.23733 (18)0.95432 (13)−0.12264 (10)0.0649 (5)
O10.1744 (4)0.6032 (3)0.0822 (3)0.0589 (9)
N10.0376 (5)0.7093 (4)−0.0934 (3)0.0478 (9)
H10.02490.6407−0.05660.057*
N20.3169 (5)0.8104 (4)0.0374 (3)0.0480 (9)
H20.41810.87900.05780.058*
C1−0.2560 (7)0.7626 (5)−0.1733 (4)0.0581 (12)
H1A−0.25910.8089−0.10100.070*
C2−0.4017 (7)0.7532 (6)−0.2651 (5)0.0677 (15)
H2A−0.50340.7921−0.25470.081*
C3−0.3938 (8)0.6860 (6)−0.3712 (5)0.0733 (16)
H3−0.49110.6795−0.43290.088*
C4−0.2470 (8)0.6287 (5)−0.3879 (4)0.0645 (14)
H4−0.24410.5826−0.46040.077*
C5−0.1014 (6)0.6392 (5)−0.2968 (4)0.0514 (12)
C6−0.1079 (6)0.7039 (4)−0.1892 (3)0.0425 (10)
C70.1916 (6)0.8164 (4)−0.0593 (3)0.0455 (11)
C80.3017 (6)0.7097 (5)0.1054 (3)0.0454 (10)
C90.4490 (7)0.7445 (5)0.2141 (4)0.0563 (13)
H90.53580.83560.21470.068*
C100.5689 (8)0.6399 (6)0.2138 (4)0.0719 (15)
H10A0.65360.65870.28780.086*
H10B0.48310.54780.20560.086*
C110.6883 (9)0.6393 (7)0.1219 (5)0.094 (2)
H11A0.60620.61960.04800.142*
H11B0.75720.56930.12740.142*
H11C0.77830.72870.13120.142*
C120.3511 (8)0.7576 (6)0.3165 (4)0.0711 (15)
H12A0.27090.66650.31940.085*
H12B0.44950.78450.38530.085*
C130.2284 (12)0.8584 (8)0.3208 (5)0.110 (2)
H13A0.14490.84680.24730.132*0.46
H13B0.30810.95340.34000.132*0.46
H13C0.14020.83440.24780.132*0.54
H13D0.31380.94870.32120.132*0.54
C140.104 (3)0.8234 (19)0.4181 (15)0.109 (8)0.46
H14A−0.02310.83850.40330.131*0.46
H14B0.09910.73240.43820.131*0.46
C150.251 (4)0.941 (2)0.499 (3)0.187 (13)0.46
H15A0.21420.94920.57370.280*0.46
H15B0.25671.02590.47050.280*0.46
H15C0.37510.92180.50570.280*0.46
C14'0.105 (3)0.882 (2)0.4141 (13)0.174 (14)0.54
H14C0.07560.97080.41280.209*0.54
H14D−0.01640.81030.39450.209*0.54
C15'0.197 (3)0.879 (2)0.5325 (13)0.141 (10)0.54
H15D0.11410.89680.58530.211*0.54
H15E0.31760.94910.55290.211*0.54
H15F0.22000.78930.53600.211*0.54
U11U22U33U12U13U23
Cl10.0737 (10)0.0888 (11)0.0753 (9)0.0267 (8)0.0178 (7)0.0058 (8)
S10.0619 (8)0.0570 (8)0.0629 (8)−0.0092 (6)−0.0105 (6)0.0332 (6)
O10.056 (2)0.054 (2)0.0582 (19)−0.0049 (17)−0.0026 (15)0.0277 (16)
N10.048 (2)0.047 (2)0.0413 (19)−0.0009 (18)−0.0026 (16)0.0199 (17)
N20.046 (2)0.047 (2)0.0398 (19)−0.0049 (16)−0.0046 (15)0.0137 (16)
C10.055 (3)0.061 (3)0.057 (3)0.010 (2)0.007 (2)0.015 (2)
C20.045 (3)0.066 (3)0.093 (4)0.012 (3)0.004 (3)0.029 (3)
C30.065 (4)0.081 (4)0.067 (4)0.010 (3)−0.014 (3)0.030 (3)
C40.073 (4)0.066 (3)0.044 (3)0.003 (3)−0.005 (2)0.014 (2)
C50.043 (3)0.057 (3)0.051 (3)0.003 (2)0.004 (2)0.022 (2)
C60.035 (2)0.045 (2)0.042 (2)−0.0019 (19)−0.0005 (18)0.016 (2)
C70.044 (2)0.050 (3)0.035 (2)0.000 (2)0.0018 (18)0.010 (2)
C80.044 (2)0.051 (3)0.042 (2)0.007 (2)0.0069 (19)0.018 (2)
C90.057 (3)0.062 (3)0.046 (3)0.003 (2)−0.003 (2)0.028 (2)
C100.068 (4)0.083 (4)0.063 (3)0.023 (3)−0.008 (3)0.023 (3)
C110.086 (4)0.123 (6)0.089 (4)0.045 (4)0.018 (4)0.033 (4)
C120.090 (4)0.069 (3)0.046 (3)0.006 (3)0.004 (3)0.014 (3)
C130.161 (7)0.129 (6)0.063 (4)0.081 (6)0.025 (4)0.017 (4)
C140.113 (14)0.079 (15)0.15 (2)0.065 (12)0.018 (12)−0.013 (12)
C150.14 (2)0.12 (2)0.27 (4)0.027 (16)−0.07 (2)0.04 (2)
C14'0.27 (3)0.13 (2)0.144 (18)0.16 (2)−0.006 (17)−0.049 (15)
C15'0.27 (3)0.143 (17)0.089 (11)0.130 (19)0.113 (15)0.073 (12)
Cl1—C51.720 (5)C10—H10B0.9700
S1—C71.655 (4)C11—H11A0.9600
O1—C81.206 (5)C11—H11B0.9600
N1—C71.326 (5)C11—H11C0.9600
N1—C61.430 (5)C12—C131.501 (8)
N1—H10.8600C12—H12A0.9700
N2—C81.374 (5)C12—H12B0.9700
N2—C71.384 (5)C13—C14'1.553 (10)
N2—H20.8600C13—C141.592 (10)
C1—C61.367 (6)C13—H13A0.9700
C1—C21.388 (7)C13—H13B0.9700
C1—H1A0.9300C13—H13C0.9700
C2—C31.367 (7)C13—H13D0.9700
C2—H2A0.9300C14—C151.507 (10)
C3—C41.352 (7)C14—H14A0.9700
C3—H30.9300C14—H14B0.9700
C4—C51.379 (6)C15—H15A0.9600
C4—H40.9300C15—H15B0.9600
C5—C61.372 (6)C15—H15C0.9600
C8—C91.503 (6)C14'—C15'1.484 (10)
C9—C121.505 (7)C14'—H14C0.9700
C9—C101.516 (7)C14'—H14D0.9700
C9—H90.9800C15'—H15D0.9600
C10—C111.492 (8)C15'—H15E0.9600
C10—H10A0.9700C15'—H15F0.9600
C7—N1—C6122.2 (3)C10—C11—H11C109.5
C7—N1—H1118.9H11A—C11—H11C109.5
C6—N1—H1118.9H11B—C11—H11C109.5
C8—N2—C7128.9 (4)C13—C12—C9116.9 (4)
C8—N2—H2115.6C13—C12—H12A108.1
C7—N2—H2115.6C9—C12—H12A108.1
C6—C1—C2120.0 (5)C13—C12—H12B108.1
C6—C1—H1A120.0C9—C12—H12B108.1
C2—C1—H1A120.0H12A—C12—H12B107.3
C3—C2—C1119.2 (5)C12—C13—C14'125.5 (8)
C3—C2—H2A120.4C12—C13—C14105.6 (9)
C1—C2—H2A120.4C12—C13—H13A110.6
C4—C3—C2121.1 (5)C14—C13—H13A110.6
C4—C3—H3119.4C12—C13—H13B110.6
C2—C3—H3119.4C14—C13—H13B110.6
C3—C4—C5119.6 (5)H13A—C13—H13B108.7
C3—C4—H4120.2C12—C13—H13C105.9
C5—C4—H4120.2C14'—C13—H13C105.9
C6—C5—C4120.3 (5)C12—C13—H13D105.9
C6—C5—Cl1120.0 (3)C14'—C13—H13D105.9
C4—C5—Cl1119.7 (4)H13C—C13—H13D106.3
C1—C6—C5119.7 (4)C15—C14—C1387.7 (19)
C1—C6—N1119.8 (4)C15—C14—H14A114.0
C5—C6—N1120.6 (4)C13—C14—H14A114.0
N1—C7—N2116.1 (3)C15—C14—H14B114.0
N1—C7—S1124.4 (3)C13—C14—H14B114.0
N2—C7—S1119.5 (3)H14A—C14—H14B111.2
O1—C8—N2122.6 (4)C14—C15—H15A109.5
O1—C8—C9122.1 (4)C14—C15—H15B109.5
N2—C8—C9115.3 (4)H15A—C15—H15B109.5
C8—C9—C12109.7 (4)C14—C15—H15C109.5
C8—C9—C10110.0 (4)H15A—C15—H15C109.5
C12—C9—C10114.5 (4)H15B—C15—H15C109.5
C8—C9—H9107.5C15'—C14'—C13114.4 (11)
C12—C9—H9107.5C15'—C14'—H14C108.7
C10—C9—H9107.5C13—C14'—H14C108.7
C11—C10—C9115.2 (4)C15'—C14'—H14D108.7
C11—C10—H10A108.5C13—C14'—H14D108.7
C9—C10—H10A108.5H14C—C14'—H14D107.6
C11—C10—H10B108.5C14'—C15'—H15D109.5
C9—C10—H10B108.5C14'—C15'—H15E109.5
H10A—C10—H10B107.5H15D—C15'—H15E109.5
C10—C11—H11A109.5C14'—C15'—H15F109.5
C10—C11—H11B109.5H15D—C15'—H15F109.5
H11A—C11—H11B109.5H15E—C15'—H15F109.5
C6—C1—C2—C3−0.7 (7)C7—N2—C8—O15.4 (7)
C1—C2—C3—C40.0 (8)C7—N2—C8—C9−171.6 (4)
C2—C3—C4—C5−0.6 (8)O1—C8—C9—C12−62.7 (6)
C3—C4—C5—C61.7 (7)N2—C8—C9—C12114.3 (4)
C3—C4—C5—Cl1−178.9 (4)O1—C8—C9—C1064.0 (6)
C2—C1—C6—C51.8 (7)N2—C8—C9—C10−119.0 (4)
C2—C1—C6—N1−177.5 (4)C8—C9—C10—C1164.0 (6)
C4—C5—C6—C1−2.3 (7)C12—C9—C10—C11−172.0 (5)
Cl1—C5—C6—C1178.3 (3)C8—C9—C12—C13−55.1 (6)
C4—C5—C6—N1177.0 (4)C10—C9—C12—C13−179.3 (5)
Cl1—C5—C6—N1−2.4 (6)C9—C12—C13—C14'176.0 (12)
C7—N1—C6—C1−86.5 (5)C9—C12—C13—C14166.2 (9)
C7—N1—C6—C594.1 (5)C12—C13—C14—C1597.6 (12)
C6—N1—C7—N2177.5 (4)C14'—C13—C14—C15−60 (3)
C6—N1—C7—S1−1.0 (6)C12—C13—C14'—C15'39 (2)
C8—N2—C7—N1−1.8 (7)C14—C13—C14'—C15'66 (4)
C8—N2—C7—S1176.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O10.861.982.652 (4)134
N1—H1···O1i0.862.493.184 (5)139
N2—H2···S1ii0.862.613.451 (4)168
C9—H9···S1ii0.982.813.725 (5)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O10.861.982.652 (4)134
N1—H1⋯O1i 0.862.493.184 (5)139
N2—H2⋯S1ii 0.862.613.451 (4)168
C9—H9⋯S1ii 0.982.813.725 (5)157

Symmetry codes: (i) ; (ii) .

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