Literature DB >> 24109300

5-Fluoro-3-phenyl-N'-(4-propyl-cyclo-hexyl-idene)-1H-indole-2-carbohydrazide.

Sevim Türktekin Celikesir1, Mehmet Akkurt, Gökçe Cihan Ustündağ, Orhan Büyükgüngör.   

Abstract

In the title compound, C24H26FN3O, the n class="Chemical">cyclo-hexane ring adopts a chair conformation; the propyl substituent is in an equatorial orientation and the bond-angle sum at the C atom bonded to the carbohydrazide N atom is 360.0°. The dihedral angle between the 1H-indole ring system and the phenyl ring is 82.77 (13)°. A weak intra-molecular C-H⋯π contact occurs. In the crystal, pairs of mol-ecules related by a crystallographic twofold axis are linked by bifurcated N-H⋯(O,N) hydrogen bonds; a C-H⋯O inter-action occurs between the same pair. The dimers are linked by C-H⋯F and C-H⋯π inter-actions, generating a three-dimensional network.

Entities:  

Year:  2013        PMID: 24109300      PMCID: PMC3793713          DOI: 10.1107/S1600536813018333

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the design and synthesis of indolylhydrazones and their cyclization products, spiro­thia­zolidinones, as potential anti­tuberculosis and anti­cancer agents, see: Akkurt et al. (2010 ▶, 2013 ▶); n class="Chemical">Cihan-Üstündağ & Çapan (2012 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C24H26FN3O M = 391.48 Tetragonal, a = 22.6986 (11) Å c = 8.4480 (5) Å V = 4352.6 (5) Å3 Z = 8 Mo Kα radiation μ = 0.08 mm−1 T = 296 K 0.63 × 0.46 × 0.28 mm

Data collection

Stoe IPDS 2 diffractometer Absorption correction: integration (Stoe & Cie, 2002 ▶) T min = 0.957, T max = 0.978 15640 measured reflections 4531 independent reflections 3430 reflections with I > 2σ(I) R int = 0.066

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.092 S = 1.03 4531 reflections 267 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.13 e Å−3 Δρmin = −0.11 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813018333/hb7101sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018333/hb7101Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018333/hb7101Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H26FN3ODx = 1.195 Mg m3
Mr = 391.48Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I4Cell parameters from 20884 reflections
Hall symbol: I -4θ = 2.5–27.4°
a = 22.6986 (11) ŵ = 0.08 mm1
c = 8.4480 (5) ÅT = 296 K
V = 4352.6 (5) Å3Prism, colourless
Z = 80.63 × 0.46 × 0.28 mm
F(000) = 1664
Stoe IPDS 2 diffractometer4531 independent reflections
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus3430 reflections with I > 2σ(I)
Plane graphite monochromatorRint = 0.066
Detector resolution: 6.67 pixels mm-1θmax = 26.5°, θmin = 2.5°
ω–scansh = −28→27
Absorption correction: integration (Stoe & Cie, 2002)k = −28→28
Tmin = 0.957, Tmax = 0.978l = −10→10
15640 measured reflections
Refinement on F22 restraints
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.047H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.092 W = 1/[Σ2(FO2) + (0.0396P)2 + 0.3772P] WHERE P = (FO2 + 2FC2)/3
S = 1.03(Δ/σ)max < 0.001
4531 reflectionsΔρmax = 0.13 e Å3
267 parametersΔρmin = −0.11 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.95641 (9)0.05822 (8)0.6774 (3)0.0742 (7)
O10.77085 (10)0.26762 (14)0.0944 (4)0.1013 (11)
N10.80598 (10)0.18855 (10)0.3230 (3)0.0513 (8)
N20.84810 (11)0.24602 (12)−0.0590 (3)0.0588 (9)
N30.83121 (11)0.28546 (12)−0.1750 (3)0.0608 (9)
C10.83656 (11)0.15385 (12)0.4270 (4)0.0476 (9)
C20.82036 (14)0.13032 (13)0.5733 (4)0.0587 (10)
C30.86172 (14)0.09835 (13)0.6542 (4)0.0605 (11)
C40.91761 (14)0.09077 (12)0.5911 (4)0.0559 (10)
C50.93519 (12)0.11312 (12)0.4498 (4)0.0507 (9)
C60.89358 (11)0.14621 (11)0.3643 (3)0.0432 (8)
C70.89623 (11)0.17781 (11)0.2192 (3)0.0428 (8)
C80.94986 (11)0.18498 (11)0.1185 (3)0.0443 (9)
C90.96716 (13)0.14270 (14)0.0110 (4)0.0584 (11)
C101.01697 (14)0.15077 (16)−0.0816 (4)0.0665 (11)
C111.05025 (13)0.20044 (16)−0.0662 (4)0.0667 (11)
C121.03435 (15)0.24189 (17)0.0407 (5)0.0777 (14)
C130.98449 (13)0.23467 (14)0.1336 (4)0.0634 (11)
C140.84140 (11)0.20304 (11)0.1986 (3)0.0465 (9)
C150.81674 (12)0.24211 (14)0.0752 (4)0.0566 (10)
C160.86492 (14)0.29068 (14)−0.2948 (4)0.0592 (11)
C170.92192 (15)0.26047 (14)−0.3283 (4)0.0687 (11)
C180.97104 (15)0.30538 (16)−0.3529 (4)0.0723 (12)
C190.95600 (16)0.35201 (15)−0.4750 (4)0.0673 (11)
C200.89727 (17)0.38012 (17)−0.4386 (5)0.0780 (12)
C210.84788 (16)0.33486 (19)−0.4175 (5)0.0830 (14)
C221.0046 (2)0.3974 (2)−0.4948 (5)0.0937 (16)
C231.0627 (2)0.3747 (3)−0.5558 (8)0.131 (3)
C241.1078 (3)0.4215 (4)−0.5818 (8)0.169 (4)
H10.770000.199500.334400.0620*
H20.782800.136200.614400.0700*
H2A0.8751 (11)0.2227 (12)−0.060 (3)0.060 (9)*
H30.852300.081700.751500.0730*
H50.973000.106800.411200.0610*
H90.945200.108300.000500.0700*
H101.027700.12210−0.154700.0800*
H111.083600.20580−0.128600.0800*
H121.057100.275700.052000.0930*
H130.974300.263500.206800.0760*
H17A0.917900.23630−0.422400.0830*
H17B0.931900.23480−0.240400.0830*
H18A0.979500.32450−0.252800.0870*
H18B1.006400.28490−0.386200.0870*
H190.951800.33180−0.576800.0810*
H20A0.886900.40670−0.524000.0930*
H20B0.900800.40320−0.342500.0930*
H21A0.811900.35470−0.385600.1000*
H21B0.840500.31500−0.517300.1000*
H22A0.990700.42770−0.566700.1130*
H22B1.011400.41600−0.393100.1130*
H23A1.078200.34630−0.480900.1570*
H23B1.056000.35430−0.655000.1570*
H24A1.116100.44090−0.483300.2030*
H24B1.093100.44970−0.656800.2030*
H24C1.143300.40400−0.622000.2030*
U11U22U33U12U13U23
F10.0820 (13)0.0652 (11)0.0755 (13)0.0059 (9)−0.0167 (10)0.0183 (10)
O10.0639 (15)0.135 (2)0.105 (2)0.0507 (15)0.0263 (15)0.0539 (19)
N10.0347 (11)0.0569 (14)0.0623 (15)0.0076 (10)0.0116 (11)0.0062 (12)
N20.0488 (14)0.0670 (16)0.0605 (16)0.0165 (13)−0.0026 (13)0.0149 (14)
N30.0486 (13)0.0740 (17)0.0599 (16)0.0073 (12)−0.0061 (14)0.0195 (14)
C10.0434 (14)0.0435 (14)0.0558 (17)0.0010 (11)0.0067 (14)−0.0004 (14)
C20.0553 (17)0.0578 (17)0.0630 (19)0.0022 (14)0.0196 (16)0.0060 (16)
C30.074 (2)0.0535 (17)0.0540 (18)−0.0014 (15)0.0104 (17)0.0073 (15)
C40.0631 (19)0.0438 (16)0.0609 (19)0.0019 (13)−0.0076 (16)0.0050 (15)
C50.0426 (14)0.0480 (15)0.0616 (18)0.0028 (12)−0.0002 (14)0.0011 (14)
C60.0405 (14)0.0390 (13)0.0502 (15)0.0013 (11)0.0035 (12)−0.0029 (12)
C70.0364 (13)0.0437 (14)0.0483 (16)0.0026 (11)0.0025 (12)−0.0005 (12)
C80.0336 (13)0.0507 (15)0.0487 (17)0.0053 (11)−0.0003 (12)0.0087 (13)
C90.0444 (16)0.0658 (19)0.065 (2)−0.0009 (14)0.0054 (15)−0.0084 (16)
C100.0536 (18)0.084 (2)0.062 (2)0.0113 (16)0.0098 (16)−0.0081 (18)
C110.0432 (16)0.087 (2)0.070 (2)0.0038 (16)0.0174 (16)0.014 (2)
C120.060 (2)0.066 (2)0.107 (3)−0.0134 (17)0.020 (2)0.013 (2)
C130.0551 (18)0.0540 (17)0.081 (2)−0.0016 (14)0.0174 (17)−0.0034 (16)
C140.0390 (14)0.0482 (15)0.0523 (16)0.0023 (12)0.0038 (13)0.0020 (13)
C150.0379 (14)0.0648 (18)0.067 (2)0.0075 (13)0.0065 (15)0.0128 (16)
C160.0519 (17)0.0660 (19)0.0596 (19)−0.0019 (15)−0.0097 (16)0.0107 (16)
C170.078 (2)0.0631 (19)0.065 (2)0.0053 (16)0.0121 (18)0.0046 (18)
C180.060 (2)0.088 (2)0.069 (2)0.0106 (17)0.0040 (18)0.015 (2)
C190.070 (2)0.075 (2)0.0570 (19)−0.0035 (17)0.0010 (16)0.0060 (17)
C200.085 (2)0.079 (2)0.070 (2)0.0109 (19)0.002 (2)0.024 (2)
C210.064 (2)0.109 (3)0.076 (2)0.0032 (19)−0.0066 (19)0.034 (2)
C220.095 (3)0.109 (3)0.077 (2)−0.022 (2)−0.005 (2)0.022 (2)
C230.084 (3)0.169 (5)0.139 (5)−0.026 (3)0.007 (3)0.047 (4)
C240.113 (4)0.272 (9)0.122 (5)−0.080 (5)−0.013 (4)0.074 (5)
F1—C41.361 (4)C19—C221.519 (6)
O1—C151.203 (4)C19—C201.510 (5)
N1—C11.369 (4)C20—C211.531 (6)
N1—C141.364 (4)C22—C231.507 (7)
N2—N31.382 (4)C23—C241.492 (10)
N2—C151.342 (4)C2—H20.9300
N3—C161.274 (4)C3—H30.9300
N1—H10.8600C5—H50.9300
N2—H2A0.81 (3)C9—H90.9300
C1—C21.396 (5)C10—H100.9300
C1—C61.409 (4)C11—H110.9300
C2—C31.369 (4)C12—H120.9300
C3—C41.387 (5)C13—H130.9300
C4—C51.357 (5)C17—H17A0.9700
C5—C61.406 (4)C17—H17B0.9700
C6—C71.422 (4)C18—H18A0.9700
C7—C81.494 (4)C18—H18B0.9700
C7—C141.381 (4)C19—H190.9800
C8—C91.378 (4)C20—H20A0.9700
C8—C131.381 (4)C20—H20B0.9700
C9—C101.387 (4)C21—H21A0.9700
C10—C111.363 (5)C21—H21B0.9700
C11—C121.353 (5)C22—H22A0.9700
C12—C131.387 (5)C22—H22B0.9700
C14—C151.479 (4)C23—H23A0.9700
C16—C211.493 (5)C23—H23B0.9700
C16—C171.491 (5)C24—H24A0.9600
C17—C181.525 (5)C24—H24B0.9600
C18—C191.517 (5)C24—H24C0.9600
C1—N1—C14109.5 (2)C4—C5—H5122.00
N3—N2—C15119.7 (3)C6—C5—H5121.00
N2—N3—C16117.2 (3)C8—C9—H9120.00
C1—N1—H1125.00C10—C9—H9120.00
C14—N1—H1125.00C9—C10—H10120.00
N3—N2—H2A128.8 (18)C11—C10—H10120.00
C15—N2—H2A111.5 (18)C10—C11—H11120.00
N1—C1—C6107.2 (3)C12—C11—H11120.00
C2—C1—C6121.9 (3)C11—C12—H12120.00
N1—C1—C2130.9 (3)C13—C12—H12120.00
C1—C2—C3117.7 (3)C8—C13—H13120.00
C2—C3—C4120.1 (3)C12—C13—H13120.00
F1—C4—C3117.0 (3)C16—C17—H17A110.00
C3—C4—C5124.1 (3)C16—C17—H17B109.00
F1—C4—C5118.9 (3)C18—C17—H17A110.00
C4—C5—C6117.0 (3)C18—C17—H17B110.00
C1—C6—C5119.3 (3)H17A—C17—H17B108.00
C5—C6—C7133.2 (2)C17—C18—H18A109.00
C1—C6—C7107.5 (2)C17—C18—H18B109.00
C6—C7—C14106.3 (2)C19—C18—H18A109.00
C8—C7—C14128.1 (2)C19—C18—H18B109.00
C6—C7—C8125.5 (2)H18A—C18—H18B108.00
C7—C8—C13120.0 (2)C18—C19—H19107.00
C9—C8—C13117.9 (3)C20—C19—H19107.00
C7—C8—C9122.1 (2)C22—C19—H19107.00
C8—C9—C10120.8 (3)C19—C20—H20A109.00
C9—C10—C11120.5 (3)C19—C20—H20B109.00
C10—C11—C12119.4 (3)C21—C20—H20A109.00
C11—C12—C13120.9 (3)C21—C20—H20B109.00
C8—C13—C12120.6 (3)H20A—C20—H20B108.00
N1—C14—C15117.7 (2)C16—C21—H21A110.00
C7—C14—C15132.7 (2)C16—C21—H21B110.00
N1—C14—C7109.5 (2)C20—C21—H21A110.00
N2—C15—C14115.8 (2)C20—C21—H21B110.00
O1—C15—N2122.8 (3)H21A—C21—H21B108.00
O1—C15—C14121.4 (3)C19—C22—H22A108.00
N3—C16—C21117.3 (3)C19—C22—H22B108.00
C17—C16—C21113.7 (3)C23—C22—H22A108.00
N3—C16—C17129.0 (3)C23—C22—H22B108.00
C16—C17—C18110.7 (3)H22A—C22—H22B107.00
C17—C18—C19113.2 (3)C22—C23—H23A109.00
C18—C19—C20110.8 (3)C22—C23—H23B109.00
C18—C19—C22112.6 (3)C24—C23—H23A109.00
C20—C19—C22112.2 (3)C24—C23—H23B109.00
C19—C20—C21112.8 (3)H23A—C23—H23B108.00
C16—C21—C20110.0 (3)C23—C24—H24A109.00
C19—C22—C23116.2 (4)C23—C24—H24B109.00
C22—C23—C24114.1 (6)C23—C24—H24C109.00
C1—C2—H2121.00H24A—C24—H24B110.00
C3—C2—H2121.00H24A—C24—H24C109.00
C2—C3—H3120.00H24B—C24—H24C110.00
C4—C3—H3120.00
C1—N1—C14—C15−178.2 (2)C14—C7—C8—C1379.6 (4)
C14—N1—C1—C2176.9 (3)C14—C7—C8—C9−101.6 (3)
C14—N1—C1—C6−0.2 (3)C8—C7—C14—C152.2 (5)
C1—N1—C14—C70.0 (3)C6—C7—C8—C13−95.4 (3)
C15—N2—N3—C16174.8 (3)C9—C8—C13—C121.3 (5)
N3—N2—C15—O17.1 (5)C7—C8—C13—C12−179.9 (3)
N3—N2—C15—C14−174.2 (2)C7—C8—C9—C10179.6 (3)
N2—N3—C16—C21−177.8 (3)C13—C8—C9—C10−1.6 (4)
N2—N3—C16—C17−1.1 (5)C8—C9—C10—C111.0 (5)
C2—C1—C6—C7−177.2 (3)C9—C10—C11—C120.2 (5)
N1—C1—C2—C3−177.8 (3)C10—C11—C12—C13−0.5 (5)
C6—C1—C2—C3−1.0 (4)C11—C12—C13—C8−0.2 (5)
N1—C1—C6—C70.3 (3)N1—C14—C15—N2−167.4 (3)
C2—C1—C6—C51.1 (4)C7—C14—C15—O1−166.4 (3)
N1—C1—C6—C5178.6 (2)C7—C14—C15—N214.9 (5)
C1—C2—C3—C40.6 (4)N1—C14—C15—O111.3 (4)
C2—C3—C4—F1−179.6 (3)N3—C16—C17—C18−122.2 (4)
C2—C3—C4—C5−0.3 (5)C21—C16—C17—C1854.6 (4)
C3—C4—C5—C60.4 (4)N3—C16—C21—C20121.6 (3)
F1—C4—C5—C6179.7 (2)C17—C16—C21—C20−55.6 (4)
C4—C5—C6—C7177.0 (3)C16—C17—C18—C19−52.3 (4)
C4—C5—C6—C1−0.8 (4)C17—C18—C19—C2051.8 (4)
C5—C6—C7—C8−2.3 (5)C17—C18—C19—C22178.4 (3)
C1—C6—C7—C14−0.2 (3)C18—C19—C20—C21−52.9 (4)
C5—C6—C7—C14−178.2 (3)C22—C19—C20—C21−179.7 (3)
C1—C6—C7—C8175.7 (2)C18—C19—C22—C2363.2 (5)
C6—C7—C14—N10.1 (3)C20—C19—C22—C23−170.9 (4)
C6—C7—C8—C983.4 (4)C19—C20—C21—C1654.5 (4)
C6—C7—C14—C15178.0 (3)C19—C22—C23—C24176.7 (5)
C8—C7—C14—N1−175.6 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.503.048 (4)123
N1—H1···N3i0.862.323.170 (3)168
C2—H2···O1i0.932.513.112 (4)123
C5—H5···F1ii0.932.523.383 (3)154
C3—H3···Cg3iii0.932.823.708 (3)160
C11—H11···Cg1iv0.932.893.683 (3)144
C17—H17A···Cg2v0.972.813.571 (3)136
C17—H17B···Cg30.972.903.810 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

Cg1, Cg2 and Cg3 are the centroids of the 1H-pyrrole (N1/C1/C6/C7/C14), benzene (C1–C6) and phenyl (C8–C13) rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.862.503.048 (4)123
N1—H1⋯N3i 0.862.323.170 (3)168
C2—H2⋯O1i 0.932.513.112 (4)123
C5—H5⋯F1ii 0.932.523.383 (3)154
C3—H3⋯Cg3iii 0.932.823.708 (3)160
C11—H11⋯Cg1iv 0.932.893.683 (3)144
C17—H17ACg2v 0.972.813.571 (3)136
C17—H17BCg30.972.903.810 (4)157

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and evaluation of functionalized indoles as antimycobacterial and anticancer agents.

Authors:  Gökçe Cihan-Üstündağ; Gültaze Capan
Journal:  Mol Divers       Date:  2012-08-15       Impact factor: 2.943

3.  5-Fluoro-N'-[(E)-4-methoxy-benzyl-idene]-3-phenyl-1H-indole-2-carbohydrazide.

Authors:  Mehmet Akkurt; Ismail Celik; Gökçe Cihan; Gültaze Capan; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-13

4.  5-Chloro-N'-cyclo-hexyl-idene-3-methyl-1H-indole-2-carbohydrazide.

Authors:  Mehmet Akkurt; Muhammet Zopun; Gültaze Capan; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-22
  4 in total
  1 in total

1.  N'-(4-Ethyl-cyclo-hexyl-idene)-5-fluoro-3-phenyl-1H-indole-2-carbohydrazide.

Authors:  Mehmet Akkurt; Sevim Türktekin Celikesir; Gökçe Cihan Ustündağ; Gültaze Capan; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-27
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.