Literature DB >> 24109292

4-Chloro-butyl 7-chloro-1-cyclo-propyl-4-(1,3-diethyl-4,6-dioxo-2-sulfanyl-idene-1,3-diazinan-5-yl-idene)-6-fluoro-1,4-di-hydro-quinoline-3-carboxyl-ate.

Kamal Sweidan1, Salim F Haddad, Murad A Aldamen, Ahmed Al-Sheikhb.   

Abstract

The title compound, C25H26Cl2FN3O4S, contains two bio-active moieties (thio-barbituric acid and fluoro-quinolone). In the crystal, mol-ecules are linked via C-H⋯O and C-H⋯F hydrogen bonds, forming two-dimensional slab-like networks lying parallel to the bc plane. The benzene ring substituted by F and Cl atoms and the 4-chloro-butyl group seem to be partly disordered, however attempts to model the disorder were unsuccessful.

Entities:  

Year:  2013        PMID: 24109292      PMCID: PMC3793705          DOI: 10.1107/S1600536813016024

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of fluoro­quinolone derivatives, see: Li et al. (2000 ▶); Baker et al. (2004 ▶); Mitscher (2005 ▶). For the crystal structures of some fluoro­quinolone and 1,3-diethyl-2-thio­barbituric acid derivatives, see: Al-Qawasmeh (2012 ▶); Sweidan et al. (2012 ▶); Shishkin et al. (1997 ▶).

Experimental

Crystal data

C25H26Cl2FN3O4S M = 554.45 Monoclinic, a = 24.3035 (15) Å b = 13.8310 (8) Å c = 16.4507 (16) Å β = 107.345 (8)° V = 5278.3 (7) Å3 Z = 8 Mo Kα radiation μ = 0.37 mm−1 T = 293 K 0.30 × 0.15 × 0.06 mm

Data collection

Agilent Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.606, T max = 1.000 12511 measured reflections 4664 independent reflections 2477 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.078 wR(F 2) = 0.230 S = 1.02 4664 reflections 325 parameters H-atom parameters constrained Δρmax = 0.58 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813016024/bh2478sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016024/bh2478Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813016024/bh2478Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H26Cl2FN3O4SF(000) = 2304
Mr = 554.45Dx = 1.395 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71070 Å
Hall symbol: -C 2ycCell parameters from 2598 reflections
a = 24.3035 (15) Åθ = 2.9–29.0°
b = 13.8310 (8) ŵ = 0.37 mm1
c = 16.4507 (16) ÅT = 293 K
β = 107.345 (8)°Parallelpiped, orange
V = 5278.3 (7) Å30.30 × 0.15 × 0.06 mm
Z = 8
Agilent Xcalibur Eos diffractometer4664 independent reflections
Radiation source: Enhance (Mo) X-ray Source2477 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
Detector resolution: 16.0534 pixels mm-1θmax = 25.0°, θmin = 2.9°
ω scansh = −28→22
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −16→16
Tmin = 0.606, Tmax = 1.000l = −19→18
12511 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.078Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.230H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.1011P)2 + 5.5588P] where P = (Fo2 + 2Fc2)/3
4664 reflections(Δ/σ)max < 0.001
325 parametersΔρmax = 0.58 e Å3
0 restraintsΔρmin = −0.40 e Å3
0 constraints
xyzUiso*/Ueq
S10.24101 (6)0.17120 (14)0.14821 (12)0.0943 (6)
Cl1−0.19348 (8)0.14374 (13)0.09519 (18)0.1377 (10)
Cl20.08427 (9)1.00624 (14)0.18342 (15)0.1267 (8)
F1−0.07857 (15)0.0682 (2)0.1166 (3)0.1128 (14)
O10.03572 (14)0.2291 (3)0.0014 (2)0.0712 (11)
O20.12679 (13)0.4217 (2)0.2354 (2)0.0586 (9)
O30.08993 (13)0.5366 (2)0.0784 (2)0.0578 (9)
O40.06525 (13)0.6089 (2)0.1858 (2)0.0612 (10)
N1−0.08816 (13)0.4624 (2)0.1034 (2)0.0369 (8)
N20.12960 (16)0.2031 (3)0.0780 (2)0.0483 (10)
N30.17566 (15)0.3066 (3)0.1881 (2)0.0531 (11)
C1−0.08558 (17)0.3631 (3)0.1035 (3)0.0405 (10)
C2−0.03227 (17)0.3163 (3)0.1127 (3)0.0390 (10)
C30.01920 (16)0.3715 (3)0.1196 (2)0.0374 (10)
C40.01378 (17)0.4713 (3)0.1244 (3)0.0377 (10)
C5−0.03978 (18)0.5125 (3)0.1162 (3)0.0401 (10)
H5A−0.04180.57940.12000.048*
C6−0.1360 (2)0.3092 (3)0.0963 (3)0.0552 (13)
H6A−0.17100.34050.08870.066*
C7−0.1331 (2)0.2110 (4)0.1008 (4)0.0736 (17)
C8−0.0802 (2)0.1650 (4)0.1120 (4)0.0724 (17)
C9−0.0314 (2)0.2151 (3)0.1193 (3)0.0582 (14)
H9A0.00330.18210.12870.070*
C100.07331 (17)0.3246 (3)0.1239 (3)0.0401 (10)
C110.07575 (18)0.2519 (3)0.0643 (3)0.0462 (11)
C120.1791 (2)0.2288 (4)0.1375 (3)0.0516 (12)
C130.12424 (17)0.3552 (3)0.1849 (3)0.0434 (11)
C140.1290 (2)0.1194 (4)0.0207 (4)0.0677 (15)
H14A0.15610.07110.05170.081*
H14B0.09090.09050.00410.081*
C150.1443 (3)0.1470 (4)−0.0569 (4)0.092 (2)
H15A0.14330.0907−0.09150.138*
H15B0.18230.1743−0.04090.138*
H15C0.11710.1938−0.08860.138*
C160.2289 (2)0.3434 (5)0.2500 (4)0.0736 (17)
H16A0.25640.29100.26750.088*
H16B0.22000.36710.30010.088*
C170.2549 (3)0.4222 (6)0.2130 (5)0.107 (2)
H17A0.28930.44460.25450.161*
H17B0.22790.47460.19650.161*
H17C0.26430.39850.16390.161*
C18−0.14249 (17)0.5130 (3)0.0928 (3)0.0437 (11)
H18A−0.15490.51880.14410.052*
C19−0.1571 (2)0.5954 (4)0.0329 (3)0.0594 (14)
H19A−0.17680.65020.04840.071*
H19B−0.13020.61160.00160.071*
C20−0.1889 (2)0.5045 (4)0.0120 (3)0.0610 (14)
H20A−0.18170.4647−0.03240.073*
H20B−0.22830.50320.01440.073*
C210.06135 (18)0.5399 (3)0.1271 (3)0.0455 (11)
C220.1124 (3)0.6771 (5)0.1981 (5)0.094 (2)
H22A0.13020.68660.25870.113*
H22B0.14120.64960.17490.113*
C230.0952 (3)0.7671 (6)0.1597 (6)0.130 (3)
H23A0.08250.75780.09850.156*
H23B0.12880.80870.17280.156*
C240.0490 (3)0.8188 (5)0.1840 (6)0.112 (2)
H24A0.06100.82830.24520.134*
H24B0.01460.77890.16940.134*
C250.0342 (4)0.9178 (6)0.1395 (6)0.145 (4)
H25A−0.00320.93850.14290.174*
H25B0.03140.91060.07980.174*
U11U22U33U12U13U23
S10.0580 (9)0.1077 (14)0.1167 (15)0.0380 (9)0.0255 (9)−0.0067 (10)
Cl10.0780 (11)0.0645 (11)0.284 (3)−0.0280 (9)0.0751 (15)−0.0082 (14)
Cl20.1264 (17)0.0849 (14)0.161 (2)−0.0058 (12)0.0313 (15)0.0051 (12)
F10.094 (3)0.0357 (18)0.222 (5)−0.0059 (17)0.067 (3)0.003 (2)
O10.052 (2)0.082 (3)0.072 (3)0.0024 (19)0.0056 (19)−0.036 (2)
O20.0491 (19)0.075 (2)0.043 (2)0.0087 (17)0.0004 (16)−0.0185 (17)
O30.0477 (18)0.070 (2)0.060 (2)−0.0072 (17)0.0225 (17)−0.0007 (17)
O40.0503 (19)0.046 (2)0.090 (3)−0.0131 (16)0.0254 (19)−0.0231 (18)
N10.0313 (18)0.036 (2)0.045 (2)0.0007 (16)0.0143 (16)−0.0002 (16)
N20.048 (2)0.042 (2)0.061 (3)0.0062 (18)0.027 (2)−0.0024 (18)
N30.035 (2)0.073 (3)0.047 (2)0.0094 (19)0.0070 (18)−0.008 (2)
C10.038 (2)0.039 (3)0.046 (3)−0.003 (2)0.017 (2)−0.002 (2)
C20.038 (2)0.037 (2)0.043 (3)0.003 (2)0.012 (2)−0.0028 (19)
C30.035 (2)0.042 (3)0.035 (2)0.001 (2)0.0089 (19)−0.0015 (18)
C40.036 (2)0.040 (3)0.038 (3)−0.001 (2)0.0111 (19)−0.0021 (18)
C50.043 (2)0.037 (2)0.042 (3)−0.002 (2)0.015 (2)−0.0022 (19)
C60.042 (3)0.046 (3)0.080 (4)−0.003 (2)0.022 (3)−0.003 (2)
C70.057 (3)0.051 (3)0.120 (5)−0.016 (3)0.036 (3)−0.009 (3)
C80.065 (4)0.036 (3)0.126 (5)0.000 (3)0.044 (4)0.000 (3)
C90.051 (3)0.042 (3)0.086 (4)0.005 (2)0.027 (3)0.004 (2)
C100.038 (2)0.041 (3)0.041 (3)0.003 (2)0.012 (2)−0.0051 (19)
C110.039 (2)0.046 (3)0.056 (3)0.003 (2)0.018 (2)−0.005 (2)
C120.046 (3)0.059 (3)0.052 (3)0.009 (2)0.018 (2)0.003 (2)
C130.037 (2)0.056 (3)0.037 (3)0.005 (2)0.011 (2)−0.004 (2)
C140.069 (3)0.049 (3)0.092 (4)−0.001 (3)0.035 (3)−0.021 (3)
C150.118 (5)0.074 (4)0.106 (5)−0.016 (4)0.066 (4)−0.034 (4)
C160.044 (3)0.108 (5)0.057 (4)0.010 (3)−0.003 (3)−0.010 (3)
C170.070 (4)0.130 (6)0.105 (6)−0.020 (4)0.001 (4)−0.013 (5)
C180.035 (2)0.050 (3)0.049 (3)0.008 (2)0.017 (2)0.006 (2)
C190.046 (3)0.060 (3)0.077 (4)0.014 (3)0.026 (3)0.024 (3)
C200.038 (3)0.073 (4)0.071 (4)0.010 (3)0.014 (3)0.005 (3)
C210.037 (2)0.047 (3)0.051 (3)−0.001 (2)0.011 (2)0.000 (2)
C220.067 (4)0.065 (4)0.145 (7)−0.019 (3)0.023 (4)−0.037 (4)
C230.068 (5)0.105 (6)0.203 (9)−0.009 (5)0.019 (5)0.021 (6)
C240.088 (5)0.091 (5)0.150 (7)−0.004 (4)0.027 (5)−0.002 (5)
C250.119 (7)0.102 (6)0.170 (9)−0.009 (5)−0.022 (6)−0.002 (6)
S1—C121.665 (5)C10—C111.418 (6)
Cl1—C71.717 (5)C14—C151.481 (8)
Cl2—C251.725 (7)C14—H14A0.9700
F1—C81.341 (6)C14—H14B0.9700
O1—C111.231 (5)C15—H15A0.9600
O2—C131.229 (5)C15—H15B0.9600
O3—C211.208 (5)C15—H15C0.9600
O4—C211.340 (5)C16—C171.479 (8)
O4—C221.451 (6)C16—H16A0.9700
N1—C51.326 (5)C16—H16B0.9700
N1—C11.375 (5)C17—H17A0.9600
N1—C181.458 (5)C17—H17B0.9600
N2—C121.352 (6)C17—H17C0.9600
N2—C111.429 (5)C18—C201.469 (6)
N2—C141.491 (6)C18—C191.479 (6)
N3—C121.379 (6)C18—H18A0.9800
N3—C131.406 (5)C19—C201.462 (7)
N3—C161.477 (6)C19—H19A0.9700
C1—C61.409 (6)C19—H19B0.9700
C1—C21.415 (5)C20—H20A0.9700
C2—C91.404 (6)C20—H20B0.9700
C2—C31.441 (5)C22—C231.402 (9)
C3—C41.391 (6)C22—H22A0.9700
C3—C101.449 (5)C22—H22B0.9700
C4—C51.390 (5)C23—C241.484 (10)
C4—C211.486 (6)C23—H23A0.9700
C5—H5A0.9300C23—H23B0.9700
C6—C71.361 (7)C24—C251.544 (10)
C6—H6A0.9300C24—H24A0.9700
C7—C81.396 (7)C24—H24B0.9700
C8—C91.348 (7)C25—H25A0.9700
C9—H9A0.9300C25—H25B0.9700
C10—C131.406 (6)
C21—O4—C22116.5 (4)H15A—C15—H15C109.5
C5—N1—C1118.9 (3)H15B—C15—H15C109.5
C5—N1—C18119.8 (3)N3—C16—C17111.4 (5)
C1—N1—C18121.3 (3)N3—C16—H16A109.4
C12—N2—C11124.5 (4)C17—C16—H16A109.4
C12—N2—C14120.0 (4)N3—C16—H16B109.4
C11—N2—C14115.5 (4)C17—C16—H16B109.4
C12—N3—C13124.3 (4)H16A—C16—H16B108.0
C12—N3—C16119.1 (4)C16—C17—H17A109.5
C13—N3—C16116.6 (4)C16—C17—H17B109.5
N1—C1—C6119.4 (4)H17A—C17—H17B109.5
N1—C1—C2119.8 (4)C16—C17—H17C109.5
C6—C1—C2120.8 (4)H17A—C17—H17C109.5
C9—C2—C1117.2 (4)H17B—C17—H17C109.5
C9—C2—C3122.0 (4)N1—C18—C20119.5 (4)
C1—C2—C3120.8 (4)N1—C18—C19118.6 (4)
C4—C3—C2115.8 (3)C20—C18—C1959.5 (3)
C4—C3—C10122.8 (4)N1—C18—H18A115.9
C2—C3—C10121.3 (4)C20—C18—H18A115.9
C5—C4—C3120.2 (4)C19—C18—H18A115.9
C5—C4—C21116.0 (4)C20—C19—C1859.9 (3)
C3—C4—C21123.3 (4)C20—C19—H19A117.8
N1—C5—C4124.1 (4)C18—C19—H19A117.8
N1—C5—H5A117.9C20—C19—H19B117.8
C4—C5—H5A117.9C18—C19—H19B117.8
C7—C6—C1119.6 (4)H19A—C19—H19B114.9
C7—C6—H6A120.2C19—C20—C1860.6 (3)
C1—C6—H6A120.2C19—C20—H20A117.7
C6—C7—C8119.6 (5)C18—C20—H20A117.7
C6—C7—Cl1120.5 (4)C19—C20—H20B117.7
C8—C7—Cl1119.9 (4)C18—C20—H20B117.7
F1—C8—C9119.8 (5)H20A—C20—H20B114.8
F1—C8—C7118.3 (5)O3—C21—O4125.1 (4)
C9—C8—C7121.9 (5)O3—C21—C4123.4 (4)
C8—C9—C2120.9 (4)O4—C21—C4111.3 (4)
C8—C9—H9A119.6C23—C22—O4113.5 (6)
C2—C9—H9A119.6C23—C22—H22A108.9
C13—C10—C11119.8 (4)O4—C22—H22A108.9
C13—C10—C3119.5 (4)C23—C22—H22B108.9
C11—C10—C3120.5 (4)O4—C22—H22B108.9
O1—C11—C10125.3 (4)H22A—C22—H22B107.7
O1—C11—N2118.0 (4)C22—C23—C24117.0 (8)
C10—C11—N2116.8 (4)C22—C23—H23A108.1
N2—C12—N3116.2 (4)C24—C23—H23A108.1
N2—C12—S1122.2 (4)C22—C23—H23B108.1
N3—C12—S1121.7 (4)C24—C23—H23B108.1
O2—C13—N3117.9 (4)H23A—C23—H23B107.3
O2—C13—C10124.4 (4)C23—C24—C25112.8 (7)
N3—C13—C10117.8 (4)C23—C24—H24A109.0
C15—C14—N2112.8 (4)C25—C24—H24A109.0
C15—C14—H14A109.0C23—C24—H24B109.0
N2—C14—H14A109.0C25—C24—H24B109.0
C15—C14—H14B109.0H24A—C24—H24B107.8
N2—C14—H14B109.0C24—C25—Cl2113.3 (6)
H14A—C14—H14B107.8C24—C25—H25A108.9
C14—C15—H15A109.5Cl2—C25—H25A108.9
C14—C15—H15B109.5C24—C25—H25B108.9
H15A—C15—H15B109.5Cl2—C25—H25B108.9
C14—C15—H15C109.5H25A—C25—H25B107.7
C5—N1—C1—C6175.2 (4)C12—N2—C11—O1171.1 (5)
C18—N1—C1—C6−2.4 (6)C14—N2—C11—O1−8.3 (6)
C5—N1—C1—C2−3.3 (6)C12—N2—C11—C10−7.7 (6)
C18—N1—C1—C2179.1 (4)C14—N2—C11—C10173.0 (4)
N1—C1—C2—C9175.0 (4)C11—N2—C12—N31.1 (7)
C6—C1—C2—C9−3.5 (6)C14—N2—C12—N3−179.6 (4)
N1—C1—C2—C3−1.8 (6)C11—N2—C12—S1−177.9 (3)
C6—C1—C2—C3179.7 (4)C14—N2—C12—S11.4 (6)
C9—C2—C3—C4−171.0 (4)C13—N3—C12—N24.1 (7)
C1—C2—C3—C45.6 (6)C16—N3—C12—N2−175.3 (4)
C9—C2—C3—C107.2 (6)C13—N3—C12—S1−176.8 (4)
C1—C2—C3—C10−176.3 (4)C16—N3—C12—S13.7 (7)
C2—C3—C4—C5−4.6 (6)C12—N3—C13—O2177.8 (4)
C10—C3—C4—C5177.3 (4)C16—N3—C13—O2−2.7 (6)
C2—C3—C4—C21−176.7 (4)C12—N3—C13—C10−2.3 (7)
C10—C3—C4—C215.2 (6)C16—N3—C13—C10177.1 (4)
C1—N1—C5—C44.5 (6)C11—C10—C13—O2175.2 (4)
C18—N1—C5—C4−177.9 (4)C3—C10—C13—O2−1.3 (7)
C3—C4—C5—N1−0.3 (6)C11—C10—C13—N3−4.7 (6)
C21—C4—C5—N1172.3 (4)C3—C10—C13—N3178.8 (4)
N1—C1—C6—C7−176.7 (5)C12—N2—C14—C15−87.5 (6)
C2—C1—C6—C71.8 (7)C11—N2—C14—C1591.9 (6)
C1—C6—C7—C8−0.2 (9)C12—N3—C16—C1792.7 (6)
C1—C6—C7—Cl1178.2 (4)C13—N3—C16—C17−86.8 (6)
C6—C7—C8—F1179.6 (5)C5—N1—C18—C20117.2 (5)
Cl1—C7—C8—F11.2 (8)C1—N1—C18—C20−65.2 (5)
C6—C7—C8—C90.5 (10)C5—N1—C18—C1948.1 (6)
Cl1—C7—C8—C9−178.0 (5)C1—N1—C18—C19−134.3 (5)
F1—C8—C9—C2178.6 (5)N1—C18—C19—C20109.3 (5)
C7—C8—C9—C2−2.3 (9)N1—C18—C20—C19−107.7 (4)
C1—C2—C9—C83.8 (7)C22—O4—C21—O3−8.1 (7)
C3—C2—C9—C8−179.5 (5)C22—O4—C21—C4176.5 (4)
C4—C3—C10—C1343.7 (6)C5—C4—C21—O3−123.8 (5)
C2—C3—C10—C13−134.2 (4)C3—C4—C21—O348.6 (7)
C4—C3—C10—C11−132.7 (5)C5—C4—C21—O451.7 (5)
C2—C3—C10—C1149.3 (6)C3—C4—C21—O4−135.9 (4)
C13—C10—C11—O1−169.4 (5)C21—O4—C22—C23102.8 (7)
C3—C10—C11—O17.0 (7)O4—C22—C23—C2455.7 (10)
C13—C10—C11—N29.3 (6)C22—C23—C24—C25178.9 (7)
C3—C10—C11—N2−174.3 (4)C23—C24—C25—Cl2−76.6 (9)
D—H···AD—HH···AD···AD—H···A
C18—H18A···O2i0.982.323.014 (6)127
C20—H20A···O3ii0.972.563.233 (6)126
C25—H25A···F1iii0.972.513.371 (10)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C18—H18A⋯O2i 0.982.323.014 (6)127
C20—H20A⋯O3ii 0.972.563.233 (6)126
C25—H25A⋯F1iii 0.972.513.371 (10)148

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Lester A Mitscher
Journal:  Chem Rev       Date:  2005-02       Impact factor: 60.622

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Q Li; L A Mitscher; L L Shen
Journal:  Med Res Rev       Date:  2000-07       Impact factor: 12.944

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Journal:  J Med Chem       Date:  2004-09-09       Impact factor: 7.446

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-25
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