Literature DB >> 24109276

catena-Poly[[[tetra-aqua-magnesium]-trans-μ-[(piperazine-1,4-diium-1,4-di-yl)bis-(methyl-ene)]di-phospho-nato] hemihydrate].

Lars-Hendrik Schilling1, Norbert Stock.   

Abstract

The structure of the title polymer, }[Mg(C6H14N2O6P2)(H2O)4]·0.5H2O} n , is based on centrosymmetric MgO6 octahedra, which are linked by [(piperazine-1,4-diium-1,4-di-yl)bis-(methyl-ene)]di-phospho-nate ligands, forming chains parallel to [1-1-1]. These chains are connected via hydrogen bonds primarily formed between the phospho-nate groups and water mol-ecules. The latter constitute four of the corners of the MgO6 polyhedra and bind to the O atoms of the phospho-nate groups of neighbouring chains. The lattice water molecule is disordered around an inversion centre, exhibiting an occupancy of 0.25.

Entities:  

Year:  2013        PMID: 24109276      PMCID: PMC3793689          DOI: 10.1107/S1600536813018722

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related magnesium structures, see: Wharmby et al. (2012 ▶). For related N,N′-piperaziniumbis(methyl­ene­phospho­nates), see: Choi et al. (1994 ▶); Groves et al. (2005a ▶,b ▶); Groves, Stephens et al. (2006 ▶); Groves, Miller et al. (2006 ▶); LaDuca et al. (1996 ▶); Serre et al. (2006 ▶); Soghomonian et al. (1995 ▶); Wang et al. (2004 ▶); Wharmby et al. (2012 ▶). As a result of their flexible coordination behaviour, organic linker mol­ecules containing phospho­nate groups allow the synthesis of a multitude of inorganic-organic hybrid materials, see: Gagnon et al. (2012 ▶).

Experimental

Crystal data

[Mg(C6H14N2O6P2)(H2O)4]·0.5H2O M = 377.51 Triclinic, a = 6.6296 (5) Å b = 6.8074 (6) Å c = 8.7962 (7) Å α = 94.579 (6)° β = 103.326 (6)° γ = 106.552 (6)° V = 365.75 (5) Å3 Z = 1 Mo Kα radiation μ = 0.40 mm−1 T = 293 K 0.21 × 0.12 × 0.04 mm

Data collection

Stoe IPSD-2 diffractometer Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2008 ▶) T min = 0.886, T max = 0.974 6973 measured reflections 1957 independent reflections 1727 reflections with I > 2σ(I) R int = 0.036

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.080 S = 1.01 1957 reflections 103 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.43 e Å−3 Data collection: X-AREA (Stoe & Cie, 2008 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and DIAMOND Brandenburg (2011 ▶); software used to prepare material for publication: XCIF in SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813018722/cq2003sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018722/cq2003Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Mg(C6H14N2O6P2)(H2O)4]·0.5H2OZ = 1
Mr = 377.51F(000) = 199
Triclinic, P1Dx = 1.714 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.6296 (5) ÅCell parameters from 1270 reflections
b = 6.8074 (6) Åθ = 1.2–29.8°
c = 8.7962 (7) ŵ = 0.40 mm1
α = 94.579 (6)°T = 293 K
β = 103.326 (6)°Needle, colorless
γ = 106.552 (6)°0.21 × 0.12 × 0.04 mm
V = 365.75 (5) Å3
Stoe IPSD-2 diffractometer1957 independent reflections
Radiation source: fine-focus sealed tube1727 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.036
ω scanθmax = 29.2°, θmin = 3.2°
Absorption correction: numerical (X-SHAPE and X-RED32; Stoe & Cie, 2008)h = −9→9
Tmin = 0.886, Tmax = 0.974k = −9→9
6973 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0352P)2 + 0.2734P] where P = (Fo2 + 2Fc2)/3
1957 reflections(Δ/σ)max < 0.001
103 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.43 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Mg10.50000.50000.50000.01868 (16)
P10.36611 (6)0.83891 (6)0.71790 (4)0.01741 (10)
O10.47100 (19)0.67534 (18)0.69031 (14)0.0256 (2)
O20.22643 (18)0.87610 (17)0.56605 (13)0.0228 (2)
O30.52336 (14)1.04094 (13)0.81824 (11)0.0225 (2)
C10.17809 (14)0.73201 (13)0.83666 (11)0.0218 (3)
H1A0.22640.62790.89040.026*
H1B0.03790.62400.80340.026*
N10.1348 (2)0.89184 (19)0.94153 (15)0.0181 (2)
H1N10.25890.95581.00770.022*
C20.0614 (3)1.0529 (2)0.85892 (19)0.0235 (3)
H2A−0.07540.98700.77910.028*
H2B0.16901.12250.80650.028*
C3−0.0313 (3)0.7900 (2)1.02369 (19)0.0218 (3)
H3A0.01470.68571.07860.026*
H3B−0.16950.72110.94610.026*
O40.30950 (18)0.64149 (17)0.34463 (13)0.0236 (2)
H1O40.37780.72910.30080.028*
H2O40.26470.71530.39800.028*
O50.22487 (19)0.26098 (18)0.51161 (16)0.0309 (3)
H1O50.23830.14880.53100.037*
H2O50.09570.25400.49220.037*
O60.5116 (13)0.5606 (12)1.0711 (9)0.0620 (19)0.25
H1O60.52840.51201.15380.093*0.25
H2O60.52050.68221.09560.093*0.25
U11U22U33U12U13U23
Mg10.0172 (3)0.0181 (3)0.0219 (3)0.0073 (3)0.0059 (3)0.0011 (3)
P10.01580 (17)0.01772 (18)0.01999 (19)0.00653 (13)0.00637 (13)0.00069 (13)
O10.0300 (6)0.0285 (6)0.0246 (6)0.0176 (5)0.0094 (5)0.0020 (4)
O20.0203 (5)0.0246 (5)0.0244 (5)0.0097 (4)0.0047 (4)0.0025 (4)
O30.0200 (5)0.0213 (5)0.0237 (5)0.0037 (4)0.0053 (4)0.0010 (4)
C10.0228 (7)0.0170 (6)0.0276 (8)0.0055 (5)0.0121 (6)0.0011 (6)
N10.0151 (5)0.0194 (6)0.0206 (6)0.0052 (4)0.0070 (5)0.0019 (5)
C20.0269 (7)0.0258 (7)0.0246 (7)0.0132 (6)0.0127 (6)0.0077 (6)
C30.0216 (7)0.0205 (7)0.0271 (7)0.0066 (6)0.0129 (6)0.0060 (6)
O40.0245 (5)0.0233 (5)0.0252 (6)0.0101 (4)0.0075 (4)0.0032 (4)
O50.0186 (5)0.0240 (6)0.0501 (8)0.0059 (4)0.0086 (5)0.0106 (5)
O60.065 (5)0.059 (4)0.068 (5)0.025 (4)0.019 (4)0.020 (4)
Mg1—O1i2.0552 (11)N1—H1N10.8600
Mg1—O12.0553 (11)C2—C3ii1.513 (2)
Mg1—O52.0991 (12)C2—H2A0.9700
Mg1—O5i2.0992 (12)C2—H2B0.9700
Mg1—O4i2.1209 (11)C3—C2ii1.513 (2)
Mg1—O42.1209 (11)C3—H3A0.9700
P1—O11.5027 (11)C3—H3B0.9700
P1—O21.5242 (12)O4—H1O40.8199
P1—O31.5240 (10)O4—H2O40.8201
P1—C11.8383O5—H1O50.8200
C1—N11.5022 (15)O5—H2O50.8200
C1—H1A0.9700O6—O6iii1.395 (16)
C1—H1B0.9700O6—H1O60.8201
N1—C31.4925 (18)O6—H2O60.8200
N1—C21.495 (2)
O1i—Mg1—O1180.00 (6)C3—N1—C2108.49 (11)
O1i—Mg1—O590.35 (5)C3—N1—C1110.46 (10)
O1—Mg1—O589.65 (5)C2—N1—C1114.75 (11)
O1i—Mg1—O5i89.65 (5)C3—N1—H1N1111.5
O1—Mg1—O5i90.35 (5)C2—N1—H1N1106.5
O5—Mg1—O5i180.00 (7)C1—N1—H1N1105.1
O1i—Mg1—O4i89.80 (4)N1—C2—C3ii110.27 (12)
O1—Mg1—O4i90.20 (4)N1—C2—H2A109.6
O5—Mg1—O4i87.19 (5)C3ii—C2—H2A109.6
O5i—Mg1—O4i92.81 (5)N1—C2—H2B109.6
O1i—Mg1—O490.20 (4)C3ii—C2—H2B109.6
O1—Mg1—O489.80 (4)H2A—C2—H2B108.1
O5—Mg1—O492.81 (5)N1—C3—C2ii111.06 (12)
O5i—Mg1—O487.19 (5)N1—C3—H3A109.4
O4i—Mg1—O4180.0C2ii—C3—H3A109.4
O1—P1—O2113.06 (7)N1—C3—H3B109.4
O1—P1—O3114.25 (6)C2ii—C3—H3B109.4
O2—P1—O3112.00 (6)H3A—C3—H3B108.0
O1—P1—C1105.10 (6)Mg1—O4—H1O4115.4
O2—P1—C1106.31 (6)Mg1—O4—H2O4108.1
O3—P1—C1105.20 (5)H1O4—O4—H2O499.6
P1—O1—Mg1137.40 (7)Mg1—O5—H1O5119.2
N1—C1—P1114.69 (7)Mg1—O5—H2O5130.9
N1—C1—H1A114.7H1O5—O5—H2O5109.7
P1—C1—H1A108.7O6iii—O6—H1O6119.9
N1—C1—H1B102.6O6iii—O6—H2O6133.7
P1—C1—H1B128.8H1O6—O6—H2O6106.3
H1A—C1—H1B83.9
D—H···AD—HH···AD···AD—H···A
N1—H1N1···O3iv0.861.842.6187 (16)150
O4—H1O4···O3v0.821.992.7956 (15)166
O4—H2O4···O20.821.882.6733 (17)164
O5—H1O5···O2vi0.821.892.7032 (17)172
O5—H2O5···O2vii0.821.992.7667 (18)158
C1—H1B···O4vii0.972.483.4279 (15)166
C2—H2B···O30.972.553.187 (2)124
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N1⋯O3i 0.861.842.6187 (16)150
O4—H1O4⋯O3ii 0.821.992.7956 (15)166
O4—H2O4⋯O20.821.882.6733 (17)164
O5—H1O5⋯O2iii 0.821.892.7032 (17)172
O5—H2O5⋯O2iv 0.821.992.7667 (18)158

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  5 in total

Review 1.  Conventional and unconventional metal-organic frameworks based on phosphonate ligands: MOFs and UMOFs.

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2.  The pH-controlled hydrothermal synthesis and crystal structures of two zinc N,N'-piperazinebis(methylenephosphonate) frameworks.

Authors:  John A Groves; Paul A Wright; Philip Lightfoot
Journal:  Dalton Trans       Date:  2005-05-05       Impact factor: 4.390

3.  The first route to large pore metal phosphonates.

Authors:  John A Groves; Stuart R Miller; Stewart J Warrender; Caroline Mellot-Draznieks; Philip Lightfoot; Paul A Wright
Journal:  Chem Commun (Camb)       Date:  2006-06-27       Impact factor: 6.222

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Two closely related lanthanum phosphonate frameworks formed by anion-directed linking of inorganic chains.

Authors:  John A Groves; Paul A Wright; Philip Lightfoot
Journal:  Inorg Chem       Date:  2005-03-21       Impact factor: 5.165

  5 in total

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