| Literature DB >> 24109276 |
Lars-Hendrik Schilling1, Norbert Stock.
Abstract
The structure of the title polymer, }[Mg(C6H14N2O6P2)(H2O)4]·0.5H2O} n , is based on centrosymmetric MgO6 octahedra, which are linked by [(piperazine-1,4-diium-1,4-di-yl)bis-(methyl-ene)]di-phospho-nate ligands, forming chains parallel to [1-1-1]. These chains are connected via hydrogen bonds primarily formed between the phospho-nate groups and water mol-ecules. The latter constitute four of the corners of the MgO6 polyhedra and bind to the O atoms of the phospho-nate groups of neighbouring chains. The lattice water molecule is disordered around an inversion centre, exhibiting an occupancy of 0.25.Entities:
Year: 2013 PMID: 24109276 PMCID: PMC3793689 DOI: 10.1107/S1600536813018722
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Mg(C6H14N2O6P2)(H2O)4]·0.5H2O | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1270 reflections | |
| θ = 1.2–29.8° | |
| µ = 0.40 mm−1 | |
| α = 94.579 (6)° | |
| β = 103.326 (6)° | Needle, colorless |
| γ = 106.552 (6)° | 0.21 × 0.12 × 0.04 mm |
| Stoe IPSD-2 diffractometer | 1957 independent reflections |
| Radiation source: fine-focus sealed tube | 1727 reflections with |
| Graphite monochromator | |
| ω scan | θmax = 29.2°, θmin = 3.2° |
| Absorption correction: numerical ( | |
| 6973 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1957 reflections | (Δ/σ)max < 0.001 |
| 103 parameters | Δρmax = 0.43 e Å−3 |
| 0 restraints | Δρmin = −0.43 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| Mg1 | 0.5000 | 0.5000 | 0.5000 | 0.01868 (16) | |
| P1 | 0.36611 (6) | 0.83891 (6) | 0.71790 (4) | 0.01741 (10) | |
| O1 | 0.47100 (19) | 0.67534 (18) | 0.69031 (14) | 0.0256 (2) | |
| O2 | 0.22643 (18) | 0.87610 (17) | 0.56605 (13) | 0.0228 (2) | |
| O3 | 0.52336 (14) | 1.04094 (13) | 0.81824 (11) | 0.0225 (2) | |
| C1 | 0.17809 (14) | 0.73201 (13) | 0.83666 (11) | 0.0218 (3) | |
| H1A | 0.2264 | 0.6279 | 0.8904 | 0.026* | |
| H1B | 0.0379 | 0.6240 | 0.8034 | 0.026* | |
| N1 | 0.1348 (2) | 0.89184 (19) | 0.94153 (15) | 0.0181 (2) | |
| H1N1 | 0.2589 | 0.9558 | 1.0077 | 0.022* | |
| C2 | 0.0614 (3) | 1.0529 (2) | 0.85892 (19) | 0.0235 (3) | |
| H2A | −0.0754 | 0.9870 | 0.7791 | 0.028* | |
| H2B | 0.1690 | 1.1225 | 0.8065 | 0.028* | |
| C3 | −0.0313 (3) | 0.7900 (2) | 1.02369 (19) | 0.0218 (3) | |
| H3A | 0.0147 | 0.6857 | 1.0786 | 0.026* | |
| H3B | −0.1695 | 0.7211 | 0.9461 | 0.026* | |
| O4 | 0.30950 (18) | 0.64149 (17) | 0.34463 (13) | 0.0236 (2) | |
| H1O4 | 0.3778 | 0.7291 | 0.3008 | 0.028* | |
| H2O4 | 0.2647 | 0.7153 | 0.3980 | 0.028* | |
| O5 | 0.22487 (19) | 0.26098 (18) | 0.51161 (16) | 0.0309 (3) | |
| H1O5 | 0.2383 | 0.1488 | 0.5310 | 0.037* | |
| H2O5 | 0.0957 | 0.2540 | 0.4922 | 0.037* | |
| O6 | 0.5116 (13) | 0.5606 (12) | 1.0711 (9) | 0.0620 (19) | 0.25 |
| H1O6 | 0.5284 | 0.5120 | 1.1538 | 0.093* | 0.25 |
| H2O6 | 0.5205 | 0.6822 | 1.0956 | 0.093* | 0.25 |
| Mg1 | 0.0172 (3) | 0.0181 (3) | 0.0219 (3) | 0.0073 (3) | 0.0059 (3) | 0.0011 (3) |
| P1 | 0.01580 (17) | 0.01772 (18) | 0.01999 (19) | 0.00653 (13) | 0.00637 (13) | 0.00069 (13) |
| O1 | 0.0300 (6) | 0.0285 (6) | 0.0246 (6) | 0.0176 (5) | 0.0094 (5) | 0.0020 (4) |
| O2 | 0.0203 (5) | 0.0246 (5) | 0.0244 (5) | 0.0097 (4) | 0.0047 (4) | 0.0025 (4) |
| O3 | 0.0200 (5) | 0.0213 (5) | 0.0237 (5) | 0.0037 (4) | 0.0053 (4) | 0.0010 (4) |
| C1 | 0.0228 (7) | 0.0170 (6) | 0.0276 (8) | 0.0055 (5) | 0.0121 (6) | 0.0011 (6) |
| N1 | 0.0151 (5) | 0.0194 (6) | 0.0206 (6) | 0.0052 (4) | 0.0070 (5) | 0.0019 (5) |
| C2 | 0.0269 (7) | 0.0258 (7) | 0.0246 (7) | 0.0132 (6) | 0.0127 (6) | 0.0077 (6) |
| C3 | 0.0216 (7) | 0.0205 (7) | 0.0271 (7) | 0.0066 (6) | 0.0129 (6) | 0.0060 (6) |
| O4 | 0.0245 (5) | 0.0233 (5) | 0.0252 (6) | 0.0101 (4) | 0.0075 (4) | 0.0032 (4) |
| O5 | 0.0186 (5) | 0.0240 (6) | 0.0501 (8) | 0.0059 (4) | 0.0086 (5) | 0.0106 (5) |
| O6 | 0.065 (5) | 0.059 (4) | 0.068 (5) | 0.025 (4) | 0.019 (4) | 0.020 (4) |
| Mg1—O1i | 2.0552 (11) | N1—H1N1 | 0.8600 |
| Mg1—O1 | 2.0553 (11) | C2—C3ii | 1.513 (2) |
| Mg1—O5 | 2.0991 (12) | C2—H2A | 0.9700 |
| Mg1—O5i | 2.0992 (12) | C2—H2B | 0.9700 |
| Mg1—O4i | 2.1209 (11) | C3—C2ii | 1.513 (2) |
| Mg1—O4 | 2.1209 (11) | C3—H3A | 0.9700 |
| P1—O1 | 1.5027 (11) | C3—H3B | 0.9700 |
| P1—O2 | 1.5242 (12) | O4—H1O4 | 0.8199 |
| P1—O3 | 1.5240 (10) | O4—H2O4 | 0.8201 |
| P1—C1 | 1.8383 | O5—H1O5 | 0.8200 |
| C1—N1 | 1.5022 (15) | O5—H2O5 | 0.8200 |
| C1—H1A | 0.9700 | O6—O6iii | 1.395 (16) |
| C1—H1B | 0.9700 | O6—H1O6 | 0.8201 |
| N1—C3 | 1.4925 (18) | O6—H2O6 | 0.8200 |
| N1—C2 | 1.495 (2) | ||
| O1i—Mg1—O1 | 180.00 (6) | C3—N1—C2 | 108.49 (11) |
| O1i—Mg1—O5 | 90.35 (5) | C3—N1—C1 | 110.46 (10) |
| O1—Mg1—O5 | 89.65 (5) | C2—N1—C1 | 114.75 (11) |
| O1i—Mg1—O5i | 89.65 (5) | C3—N1—H1N1 | 111.5 |
| O1—Mg1—O5i | 90.35 (5) | C2—N1—H1N1 | 106.5 |
| O5—Mg1—O5i | 180.00 (7) | C1—N1—H1N1 | 105.1 |
| O1i—Mg1—O4i | 89.80 (4) | N1—C2—C3ii | 110.27 (12) |
| O1—Mg1—O4i | 90.20 (4) | N1—C2—H2A | 109.6 |
| O5—Mg1—O4i | 87.19 (5) | C3ii—C2—H2A | 109.6 |
| O5i—Mg1—O4i | 92.81 (5) | N1—C2—H2B | 109.6 |
| O1i—Mg1—O4 | 90.20 (4) | C3ii—C2—H2B | 109.6 |
| O1—Mg1—O4 | 89.80 (4) | H2A—C2—H2B | 108.1 |
| O5—Mg1—O4 | 92.81 (5) | N1—C3—C2ii | 111.06 (12) |
| O5i—Mg1—O4 | 87.19 (5) | N1—C3—H3A | 109.4 |
| O4i—Mg1—O4 | 180.0 | C2ii—C3—H3A | 109.4 |
| O1—P1—O2 | 113.06 (7) | N1—C3—H3B | 109.4 |
| O1—P1—O3 | 114.25 (6) | C2ii—C3—H3B | 109.4 |
| O2—P1—O3 | 112.00 (6) | H3A—C3—H3B | 108.0 |
| O1—P1—C1 | 105.10 (6) | Mg1—O4—H1O4 | 115.4 |
| O2—P1—C1 | 106.31 (6) | Mg1—O4—H2O4 | 108.1 |
| O3—P1—C1 | 105.20 (5) | H1O4—O4—H2O4 | 99.6 |
| P1—O1—Mg1 | 137.40 (7) | Mg1—O5—H1O5 | 119.2 |
| N1—C1—P1 | 114.69 (7) | Mg1—O5—H2O5 | 130.9 |
| N1—C1—H1A | 114.7 | H1O5—O5—H2O5 | 109.7 |
| P1—C1—H1A | 108.7 | O6iii—O6—H1O6 | 119.9 |
| N1—C1—H1B | 102.6 | O6iii—O6—H2O6 | 133.7 |
| P1—C1—H1B | 128.8 | H1O6—O6—H2O6 | 106.3 |
| H1A—C1—H1B | 83.9 |
| H··· | ||||
| N1—H1 | 0.86 | 1.84 | 2.6187 (16) | 150 |
| O4—H1 | 0.82 | 1.99 | 2.7956 (15) | 166 |
| O4—H2 | 0.82 | 1.88 | 2.6733 (17) | 164 |
| O5—H1 | 0.82 | 1.89 | 2.7032 (17) | 172 |
| O5—H2 | 0.82 | 1.99 | 2.7667 (18) | 158 |
| C1—H1 | 0.97 | 2.48 | 3.4279 (15) | 166 |
| C2—H2 | 0.97 | 2.55 | 3.187 (2) | 124 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 1.84 | 2.6187 (16) | 150 |
| O4—H1 | 0.82 | 1.99 | 2.7956 (15) | 166 |
| O4—H2 | 0.82 | 1.88 | 2.6733 (17) | 164 |
| O5—H1 | 0.82 | 1.89 | 2.7032 (17) | 172 |
| O5—H2 | 0.82 | 1.99 | 2.7667 (18) | 158 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .