Literature DB >> 24109268

Tri-aqua-(pyrazole-4-carboxyl-ato-κN (1))lithium.

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

In the monomeric title complex, [Li(C4H3N2O2)(H2O)3], the Li(+) cation is coordinated by a pyrazole N atom and three water mol-ecules in a distorted tetra-hedral geometry. The carboxyl-ate group is deprotonated. The complex mol-ecules are involved in O-H⋯O and N-H⋯O hydrogen bonding, forming layers stacked along the b axis.

Entities:  

Year:  2013        PMID: 24109268      PMCID: PMC3793681          DOI: 10.1107/S160053681301831X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of pyrazole-4-carb­oxy­lic acid, see: Foces-Foces et al. (2001 ▶).

Experimental

Crystal data

[Li(C4H3N2O2)(H2O)3] M = 172.07 Orthorhombic, a = 7.2817 (15) Å b = 6.9635 (14) Å c = 15.186 (3) Å V = 770.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.25 × 0.18 × 0.12 mm

Data collection

Kuma KM4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.967, T max = 0.983 1161 measured reflections 1161 independent reflections 901 reflections with I > 2σ(I) 3 standard reflections every 200 reflections intensity decay: 5.9%

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.119 S = 1.01 1161 reflections 133 parameters 7 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.44 e Å−3 Data collection: KM-4 Software (Kuma, 1996 ▶); cell refinement: KM-4 Software; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681301831X/kp2455sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301831X/kp2455Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C4H3N2O2)(H2O)3]F(000) = 360
Mr = 172.07Dx = 1.484 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 25 reflections
a = 7.2817 (15) Åθ = 6–15°
b = 6.9635 (14) ŵ = 0.13 mm1
c = 15.186 (3) ÅT = 293 K
V = 770.0 (3) Å3Block, colourless
Z = 40.25 × 0.18 × 0.12 mm
Kuma KM4 four-circle diffractometer901 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.000
Graphite monochromatorθmax = 30.1°, θmin = 2.7°
profile data from ω/2θ scanh = 0→10
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = 0→9
Tmin = 0.967, Tmax = 0.983l = 0→21
1161 measured reflections3 standard reflections every 200 reflections
1161 independent reflections intensity decay: 5.9%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0972P)2] where P = (Fo2 + 2Fc2)/3
1161 reflections(Δ/σ)max < 0.001
133 parametersΔρmax = 0.34 e Å3
7 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O20.5914 (2)0.4578 (3)0.32056 (11)0.0290 (4)
O10.7088 (2)0.5037 (3)0.18706 (12)0.0332 (4)
N20.1533 (3)0.4966 (3)0.10494 (15)0.0333 (5)
C40.3883 (2)0.4946 (3)0.20198 (14)0.0217 (4)
N10.0900 (2)0.5047 (3)0.18846 (14)0.0287 (4)
H1−0.02460.51030.20190.034*
C60.5766 (3)0.4856 (3)0.23794 (14)0.0214 (4)
C30.3351 (3)0.4911 (4)0.11354 (15)0.0335 (5)
H30.41670.48560.06650.040*
C50.2250 (3)0.5030 (3)0.24788 (17)0.0281 (4)
H50.21150.50670.30880.034*
Li10.0107 (6)0.4846 (6)−0.0115 (3)0.0300 (8)
O40.1074 (2)0.6710 (3)−0.09637 (13)0.0299 (4)
O3−0.2382 (2)0.5471 (3)0.01447 (13)0.0319 (4)
O50.0491 (3)0.2401 (3)−0.06531 (17)0.0444 (5)
H510.121 (4)0.161 (4)−0.043 (3)0.044 (10)*
H31−0.277 (5)0.650 (4)−0.005 (3)0.044 (10)*
H420.043 (4)0.751 (4)−0.123 (2)0.039 (9)*
H52−0.007 (5)0.177 (7)−0.100 (3)0.073 (14)*
H410.192 (4)0.631 (5)−0.126 (2)0.040 (8)*
H32−0.275 (6)0.554 (7)0.0665 (16)0.055 (12)*
U11U22U33U12U13U23
O20.0241 (7)0.0453 (9)0.0177 (6)0.0001 (6)−0.0027 (6)0.0022 (6)
O10.0169 (7)0.0595 (11)0.0230 (8)0.0000 (6)0.0001 (6)0.0051 (7)
N20.0198 (8)0.0599 (13)0.0203 (8)0.0004 (8)−0.0028 (8)0.0006 (8)
C40.0149 (7)0.0327 (10)0.0176 (9)0.0008 (6)−0.0011 (7)0.0013 (7)
N10.0162 (7)0.0465 (11)0.0236 (10)0.0002 (6)−0.0010 (7)0.0021 (7)
C60.0160 (7)0.0279 (8)0.0203 (9)0.0007 (6)−0.0023 (7)0.0007 (7)
C30.0186 (9)0.0639 (15)0.0180 (11)0.0019 (9)−0.0011 (8)0.0004 (10)
C50.0175 (8)0.0458 (12)0.0210 (9)0.0004 (8)−0.0010 (8)0.0012 (8)
Li10.0259 (15)0.0370 (18)0.0270 (18)0.0004 (14)0.0000 (16)0.0022 (15)
O40.0282 (7)0.0381 (9)0.0235 (6)0.0039 (6)0.0062 (7)0.0043 (6)
O30.0277 (7)0.0433 (9)0.0248 (8)0.0045 (6)0.0015 (6)0.0026 (8)
O50.0602 (13)0.0355 (9)0.0376 (9)0.0057 (9)−0.0118 (10)−0.0080 (8)
O2—C61.274 (3)C5—H50.9300
O1—C61.240 (3)Li1—O31.905 (5)
N2—C31.331 (3)Li1—O51.909 (4)
N2—N11.350 (3)Li1—O41.960 (5)
Li1—N22.053 (5)O4—H420.835 (19)
C4—C51.379 (3)O4—H410.813 (19)
C4—C31.398 (3)O3—H310.823 (19)
C4—C61.478 (3)O3—H320.84 (2)
N1—C51.334 (3)O5—H510.829 (19)
N1—H10.8600O5—H520.80 (2)
C3—H30.9300
C3—N2—N1104.39 (18)C4—C5—H5126.5
C3—N2—Li1125.9 (2)O3—Li1—O5115.6 (2)
N1—N2—Li1129.66 (19)O3—Li1—O4109.1 (2)
C5—C4—C3104.33 (18)O5—Li1—O4104.9 (2)
C5—C4—C6128.0 (2)O3—Li1—N2107.0 (2)
C3—C4—C6127.69 (19)O5—Li1—N2109.3 (2)
C5—N1—N2112.55 (18)O4—Li1—N2110.9 (2)
C5—N1—H1123.7Li1—O4—H42124 (2)
N2—N1—H1123.7Li1—O4—H41114 (3)
O1—C6—O2124.3 (2)H42—O4—H41112 (4)
O1—C6—C4119.05 (19)Li1—O3—H31117 (3)
O2—C6—C4116.66 (19)Li1—O3—H32121 (3)
N2—C3—C4111.67 (19)H31—O3—H32100 (4)
N2—C3—H3124.2Li1—O5—H51121 (3)
C4—C3—H3124.2Li1—O5—H52134 (4)
N1—C5—C4107.1 (2)H51—O5—H52103 (5)
N1—C5—H5126.5
D—H···AD—HH···AD···AD—H···A
O3—H32···O1i0.84 (2)1.87 (3)2.666 (3)159 (4)
O4—H41···O2ii0.81 (2)1.88 (2)2.684 (2)171 (4)
O5—H52···O2iii0.80 (2)2.04 (3)2.813 (3)163 (5)
O4—H42···O2iv0.84 (2)1.94 (2)2.770 (3)174 (4)
O3—H31···O4v0.82 (2)2.05 (3)2.820 (3)156 (4)
O5—H51···O3vi0.83 (2)1.98 (2)2.804 (3)172 (4)
N1—H1···O1i0.861.962.776 (3)159
Table 1

Selected bond lengths (Å)

Li1—N22.053 (5)
Li1—O31.905 (5)
Li1—O51.909 (4)
Li1—O41.960 (5)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H32⋯O1i 0.84 (2)1.87 (3)2.666 (3)159 (4)
O4—H41⋯O2ii 0.81 (2)1.88 (2)2.684 (2)171 (4)
O5—H52⋯O2iii 0.80 (2)2.04 (3)2.813 (3)163 (5)
O4—H42⋯O2iv 0.84 (2)1.94 (2)2.770 (3)174 (4)
O3—H31⋯O4v 0.82 (2)2.05 (3)2.820 (3)156 (4)
O5—H51⋯O3vi 0.83 (2)1.98 (2)2.804 (3)172 (4)
N1—H1⋯O1i 0.861.962.776 (3)159

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  2 in total

1.  A solid-state NMR, X-ray diffraction, and ab initio computational study of hydrogen-bond structure and dynamics of pyrazole-4-carboxylic acid chains.

Authors:  C Foces-Foces; A Echevarría; N Jagerovic; I Alkorta; J Elguero; U Langer; O Klein; M Minguet-Bonvehí; H H Limbach
Journal:  J Am Chem Soc       Date:  2001-08-15       Impact factor: 15.419

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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