Literature DB >> 24108607

Molecular diagnosis of Actinomadura madurae infection by 16S rRNA deep sequencing.

Stephen J Salipante1, Dhruba J Sengupta, Daniel R Hoogestraat, Lisa A Cummings, Bronwyn H Bryant, Catherine Natividad, Stephanie Thielges, Peter W Monsaas, Mimosa Chau, Lindley A Barbee, Christopher Rosenthal, Brad T Cookson, Noah G Hoffman.   

Abstract

Next-generation DNA sequencing can be used to catalog individual organisms within complex, polymicrobial specimens. Here, we utilized deep sequencing of 16S rRNA to implicate Actinomadura madurae as the cause of mycetoma in a diabetic patient when culture and conventional molecular methods were overwhelmed by overgrowth of other organisms.

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Year:  2013        PMID： 24108607      PMCID： PMC3838028          DOI： 10.1128/JCM.02227-13

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN： 0095-1137            Impact factor:   5.948


  29 in total

Review 1.  Prospects for the future using genomics and proteomics in clinical microbiology.

Authors:  Pierre-Edouard Fournier; Didier Raoult
Journal:  Annu Rev Microbiol       Date:  2011       Impact factor: 15.500

Review 2.  Diabetic foot infections: the role of microbiology and antibiotic treatment.

Authors:  Afsoon D Roberts; Gary L Simon
Journal:  Semin Vasc Surg       Date:  2012-06       Impact factor: 1.000

3.  Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease.

Authors:  Sharon Greenblum; Peter J Turnbaugh; Elhanan Borenstein
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-19       Impact factor: 11.205

Review 4.  Polymicrobial interactions: impact on pathogenesis and human disease.

Authors:  Brian M Peters; Mary Ann Jabra-Rizk; Graeme A O'May; J William Costerton; Mark E Shirtliff
Journal:  Clin Microbiol Rev       Date:  2012-01       Impact factor: 26.132

5.  Diagnosis of neurocysticercosis by detection of Taenia solium DNA using a global DNA screening platform.

Authors:  Amanda T Harrington; Claire J Creutzfeldt; Dhruba J Sengupta; Daniel R Hoogestraat; Joseph R Zunt; Brad T Cookson
Journal:  Clin Infect Dis       Date:  2009-01-01       Impact factor: 9.079

6.  Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions.

Authors:  Marcus J Claesson; Qiong Wang; Orla O'Sullivan; Rachel Greene-Diniz; James R Cole; R Paul Ross; Paul W O'Toole
Journal:  Nucleic Acids Res       Date:  2010-09-29       Impact factor: 16.971

7.  A systematic approach for discovering novel, clinically relevant bacteria.

Authors:  Robert Schlaberg; Keith E Simmon; Mark A Fisher
Journal:  Emerg Infect Dis       Date:  2012-03       Impact factor: 6.883

8.  Comparison of DNA extraction methods for microbial community profiling with an application to pediatric bronchoalveolar lavage samples.

Authors:  Dana Willner; Joshua Daly; David Whiley; Keith Grimwood; Claire E Wainwright; Philip Hugenholtz
Journal:  PLoS One       Date:  2012-04-13       Impact factor: 3.240

9.  Comparison of culture and molecular identification of bacteria in chronic wounds.

Authors:  Daniel D Rhoads; Randall D Wolcott; Yan Sun; Scot E Dowd
Journal:  Int J Mol Sci       Date:  2012-02-23       Impact factor: 6.208

10.  The Ribosomal Database Project: improved alignments and new tools for rRNA analysis.

Authors:  J R Cole; Q Wang; E Cardenas; J Fish; B Chai; R J Farris; A S Kulam-Syed-Mohideen; D M McGarrell; T Marsh; G M Garrity; J M Tiedje
Journal:  Nucleic Acids Res       Date:  2008-11-12       Impact factor: 16.971
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  3 in total

1.  Coinfection of Fusobacterium nucleatum and Actinomyces israelii in mastoiditis diagnosed by next-generation DNA sequencing.

Authors:  Stephen J Salipante; Daniel R Hoogestraat; April N Abbott; Dhruba J SenGupta; Lisa A Cummings; Susan M Butler-Wu; Karen Stephens; Brad T Cookson; Noah G Hoffman
Journal:  J Clin Microbiol       Date:  2014-02-26       Impact factor: 5.948

2.  Current Bioinformatics resources in combating infectious diseases.

Authors:  Amr T M Saeb
Journal:  Bioinformation       Date:  2018-01-31

3.  Molecular identification of Actinomadura madurae isolated from a patient originally from Algeria; observations from a case report.

Authors:  Arezki Izri; Mohanad Aljundi; Typhaine Billard-Pomares; Youssouf Fofana; Anthony Marteau; Theo Ghelfenstein Ferreira; Sophie Brun; Frederic Caux; Mohammad Akhoundi
Journal:  BMC Infect Dis       Date:  2020-11-11       Impact factor: 3.090
  3 in total

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