Literature DB >> 24106198

Deoxyribozyme cascade for visual detection of bacterial RNA.

Yulia V Gerasimova1, Evan M Cornett, Emily Edwards, Xiaoli Su, Kyle H Rohde, Dmitry M Kolpashchikov.   

Abstract

In the blink of the eye: a cascade of two deoxyribozymes was designed for rapid visual detection of bacterial 16S rRNA. The detection limit is 12.5 ng by the naked eye, with the ability to differentiate between closely related pathogenic and nonpathogenic species.
Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  RNA recognition; binary deoxyribozyme; mycobacterium tuberculosis; sensors; visual assays

Mesh:

Substances:

Year:  2013        PMID: 24106198      PMCID: PMC3947428          DOI: 10.1002/cbic.201300471

Source DB:  PubMed          Journal:  Chembiochem        ISSN: 1439-4227            Impact factor:   3.164


  34 in total

Review 1.  SNP genotyping and molecular haplotyping of DNA pools.

Authors:  P Y Kwok; M Xiao
Journal:  Cold Spring Harb Symp Quant Biol       Date:  2003

2.  Accelerated color change of gold nanoparticles assembled by DNAzymes for simple and fast colorimetric Pb2+ detection.

Authors:  Juewen Liu; Yi Lu
Journal:  J Am Chem Soc       Date:  2004-10-06       Impact factor: 15.419

3.  Split DNA enzyme for visual single nucleotide polymorphism typing.

Authors:  Dmitry M Kolpashchikov
Journal:  J Am Chem Soc       Date:  2008-02-19       Impact factor: 15.419

4.  A binary deoxyribozyme for nucleic acid analysis.

Authors:  Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2007-11-23       Impact factor: 3.164

5.  High sensitive and label-free colorimetric DNA detection based on nicking endonuclease-assisted activation of DNAzymes.

Authors:  Juan Li; Qiu-Hong Yao; Hua-E Fu; Xiao-Long Zhang; Huang-Hao Yang
Journal:  Talanta       Date:  2011-03-31       Impact factor: 6.057

6.  Nucleic acid detection using MNAzymes.

Authors:  Yulia V Gerasimova; Dmitry M Kolpashchikov
Journal:  Chem Biol       Date:  2010-02-26

7.  Enzyme-free strip biosensor for amplified detection of Pb2+ based on a catalytic DNA circuit.

Authors:  Junhua Chen; Xuemeng Zhou; Lingwen Zeng
Journal:  Chem Commun (Camb)       Date:  2012-12-20       Impact factor: 6.222

8.  Resonance Raman scattering of catalytic beacons for DNA detection.

Authors:  Kristy S McKeating; Duncan Graham; Karen Faulds
Journal:  Chem Commun (Camb)       Date:  2013-03-14       Impact factor: 6.222

9.  Quantitative sputum bacillary load during rifampin-containing short course chemotherapy in human immunodeficiency virus-infected and non-infected adults with pulmonary tuberculosis.

Authors:  M L Joloba; J L Johnson; A Namale; A Morrissey; A E Assegghai; R D Mugerwa; J J Ellner; K D Eisenach
Journal:  Int J Tuberc Lung Dis       Date:  2000-06       Impact factor: 2.373

10.  Correlation of the rate of protein synthesis and the third power of the RNA : protein ratio in Escherichia coli and Mycobacterium tuberculosis.

Authors:  Robert A Cox
Journal:  Microbiology       Date:  2003-03       Impact factor: 2.777

View more
  15 in total

1.  A unified sensor architecture for isothermal detection of double-stranded DNA, oligonucleotides, and small molecules.

Authors:  Carl W Brown; Matthew R Lakin; Aurora Fabry-Wood; Eli K Horwitz; Nicholas A Baker; Darko Stefanovic; Steven W Graves
Journal:  Chembiochem       Date:  2015-02-06       Impact factor: 3.164

2.  FaptaSyme: A Strategy for Converting a Monomer/Oligomer-Nonselective Aptameric Sensor into an Oligomer-Selective One.

Authors:  Baggio A Evangelista; Yoon-Seong Kim; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2018-04-26       Impact factor: 3.164

3.  Design of a biochemical circuit motif for learning linear functions.

Authors:  Matthew R Lakin; Amanda Minnich; Terran Lane; Darko Stefanovic
Journal:  J R Soc Interface       Date:  2014-12-06       Impact factor: 4.118

4.  Cascade of deoxyribozymes for the colorimetric analysis of drug resistance in Mycobacterium tuberculosis.

Authors:  Bidhan C Dhar; Adam J Reed; Suvra Mitra; Patricia Rodriguez Sanchez; Daria D Nedorezova; Ryan P Connelly; Kyle H Rohde; Yulia V Gerasimova
Journal:  Biosens Bioelectron       Date:  2020-06-13       Impact factor: 10.618

5.  Label-Free Pathogen Detection by a Deoxyribozyme Cascade with Visual Signal Readout.

Authors:  Adam J Reed; Ryan P Connelly; Allison Williams; Maithi Tran; Byoung-Shik Shim; Hyeryun Choe; Yulia V Gerasimova
Journal:  Sens Actuators B Chem       Date:  2018-11-29       Impact factor: 7.460

6.  A Microsphere-Supported Lipid Bilayer Platform for DNA Reactions on a Fluid Surface.

Authors:  Aurora Fabry-Wood; Madalyn E Fetrow; Carl W Brown; Nicholas A Baker; Nadiezda Fernandez Oropeza; Andrew P Shreve; Gabriel A Montaño; Darko Stefanovic; Matthew R Lakin; Steven W Graves
Journal:  ACS Appl Mater Interfaces       Date:  2017-08-24       Impact factor: 9.229

7.  DNA nanotechnology for nucleic acid analysis: multifunctional molecular DNA machine for RNA detection.

Authors:  A J Cox; H N Bengtson; K H Rohde; D M Kolpashchikov
Journal:  Chem Commun (Camb)       Date:  2016-12-06       Impact factor: 6.222

8.  Multiplex detection of extensively drug resistant tuberculosis using binary deoxyribozyme sensors.

Authors:  Hillary N Bengtson; Susanne Homolka; Stefan Niemann; Ana Júlia Reis; Pedro Eduardo da Silva; Yulia V Gerasimova; Dmitry M Kolpashchikov; Kyle H Rohde
Journal:  Biosens Bioelectron       Date:  2017-03-01       Impact factor: 10.618

9.  DNA Antenna Tile-Associated Deoxyribozyme Sensor with Improved Sensitivity.

Authors:  Amanda J Cox; Hillary N Bengtson; Yulia V Gerasimova; Kyle H Rohde; Dmitry M Kolpashchikov
Journal:  Chembiochem       Date:  2016-09-13       Impact factor: 3.164

10.  Divide and Control: Comparison of Split and Switch Hybridization Sensors.

Authors:  Alexandra L Smith; Dmitry M Kolpashchikov
Journal:  ChemistrySelect       Date:  2017-07-04       Impact factor: 2.109

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.