Literature DB >> 24105371

Novel myosin mutations for hereditary hearing loss revealed by targeted genomic capture and massively parallel sequencing.

Zippora Brownstein1, Amal Abu-Rayyan2, Daphne Karfunkel-Doron1, Serena Sirigu3, Bella Davidov4, Mordechai Shohat5, Moshe Frydman6, Anne Houdusse3, Moien Kanaan2, Karen B Avraham1.   

Abstract

Hereditary hearing loss is genetically heterogeneous, with a large number of genes and mutations contributing to this sensory, often monogenic, disease. This number, as well as large size, precludes comprehensive genetic diagnosis of all known deafness genes. A combination of targeted genomic capture and massively parallel sequencing (MPS), also referred to as next-generation sequencing, was applied to determine the deafness-causing genes in hearing-impaired individuals from Israeli Jewish and Palestinian Arab families. Among the mutations detected, we identified nine novel mutations in the genes encoding myosin VI, myosin VIIA and myosin XVA, doubling the number of myosin mutations in the Middle East. Myosin VI mutations were identified in this population for the first time. Modeling of the mutations provided predicted mechanisms for the damage they inflict in the molecular motors, leading to impaired function and thus deafness. The myosin mutations span all regions of these molecular motors, leading to a wide range of hearing phenotypes, reinforcing the key role of this family of proteins in auditory function. This study demonstrates that multiple mutations responsible for hearing loss can be identified in a relatively straightforward manner by targeted-gene MPS technology and concludes that this is the optimal genetic diagnostic approach for identification of mutations responsible for hearing loss.

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Year:  2013        PMID: 24105371      PMCID: PMC4023209          DOI: 10.1038/ejhg.2013.232

Source DB:  PubMed          Journal:  Eur J Hum Genet        ISSN: 1018-4813            Impact factor:   4.246


  45 in total

1.  Human nonsyndromic hereditary deafness DFNA17 is due to a mutation in nonmuscle myosin MYH9.

Authors:  A K Lalwani; J A Goldstein; M J Kelley; W Luxford; C M Castelein; A N Mhatre
Journal:  Am J Hum Genet       Date:  2000-10-09       Impact factor: 11.025

2.  MutationTaster evaluates disease-causing potential of sequence alterations.

Authors:  Jana Marie Schwarz; Christian Rödelsperger; Markus Schuelke; Dominik Seelow
Journal:  Nat Methods       Date:  2010-08       Impact factor: 28.547

3.  Comprehensive genetic testing for hereditary hearing loss using massively parallel sequencing.

Authors:  A Eliot Shearer; Adam P DeLuca; Michael S Hildebrand; Kyle R Taylor; José Gurrola; Steve Scherer; Todd E Scheetz; Richard J H Smith
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-15       Impact factor: 11.205

4.  Nonsense mutation of the stereociliar membrane protein gene PTPRQ in human hearing loss DFNB84.

Authors:  Hashem Shahin; Michael Rahil; Amal Abu Rayan; Karen B Avraham; Mary-Claire King; Moien Kanaan; Tom Walsh
Journal:  J Med Genet       Date:  2010-05-14       Impact factor: 6.318

5.  From flies' eyes to our ears: mutations in a human class III myosin cause progressive nonsyndromic hearing loss DFNB30.

Authors:  Tom Walsh; Vanessa Walsh; Sarah Vreugde; Ronna Hertzano; Hashem Shahin; Smadar Haika; Ming K Lee; Moien Kanaan; Mary-Claire King; Karen B Avraham
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-28       Impact factor: 11.205

6.  Whole exome sequencing and homozygosity mapping identify mutation in the cell polarity protein GPSM2 as the cause of nonsyndromic hearing loss DFNB82.

Authors:  Tom Walsh; Hashem Shahin; Tal Elkan-Miller; Ming K Lee; Anne M Thornton; Wendy Roeb; Amal Abu Rayyan; Suheir Loulus; Karen B Avraham; Mary-Claire King; Moien Kanaan
Journal:  Am J Hum Genet       Date:  2010-06-17       Impact factor: 11.025

7.  Genomic duplication and overexpression of TJP2/ZO-2 leads to altered expression of apoptosis genes in progressive nonsyndromic hearing loss DFNA51.

Authors:  Tom Walsh; Sarah B Pierce; Danielle R Lenz; Zippora Brownstein; Orit Dagan-Rosenfeld; Hashem Shahin; Wendy Roeb; Shane McCarthy; Alex S Nord; Carlos R Gordon; Ziva Ben-Neriah; Jonathan Sebat; Moien Kanaan; Ming K Lee; Moshe Frydman; Mary-Claire King; Karen B Avraham
Journal:  Am J Hum Genet       Date:  2010-06-17       Impact factor: 11.025

8.  A method and server for predicting damaging missense mutations.

Authors:  Ivan A Adzhubei; Steffen Schmidt; Leonid Peshkin; Vasily E Ramensky; Anna Gerasimova; Peer Bork; Alexey S Kondrashov; Shamil R Sunyaev
Journal:  Nat Methods       Date:  2010-04       Impact factor: 28.547

9.  Five novel loci for inherited hearing loss mapped by SNP-based homozygosity profiles in Palestinian families.

Authors:  Hashem Shahin; Tom Walsh; Amal Abu Rayyan; Ming K Lee; Jake Higgins; Diane Dickel; Kristen Lewis; James Thompson; Carl Baker; Alex S Nord; Sunday Stray; David Gurwitz; Karen B Avraham; Mary-Claire King; Moien Kanaan
Journal:  Eur J Hum Genet       Date:  2009-11-04       Impact factor: 4.246

10.  MYO6, the human homologue of the gene responsible for deafness in Snell's waltzer mice, is mutated in autosomal dominant nonsyndromic hearing loss.

Authors:  S Melchionda; N Ahituv; L Bisceglia; T Sobe; F Glaser; R Rabionet; M L Arbones; A Notarangelo; E Di Iorio; M Carella; L Zelante; X Estivill; K B Avraham; P Gasparini
Journal:  Am J Hum Genet       Date:  2001-07-20       Impact factor: 11.025

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  17 in total

1.  Myosin VI must dimerize and deploy its unusual lever arm in order to perform its cellular roles.

Authors:  Monalisa Mukherjea; M Yusuf Ali; Carlos Kikuti; Daniel Safer; Zhaohui Yang; Helena Sirkia; Virginie Ropars; Anne Houdusse; David M Warshaw; H Lee Sweeney
Journal:  Cell Rep       Date:  2014-08-21       Impact factor: 9.423

2.  Effects of genetic correction on the differentiation of hair cell-like cells from iPSCs with MYO15A mutation.

Authors:  J-R Chen; Z-H Tang; J Zheng; H-S Shi; J Ding; X-D Qian; C Zhang; J-L Chen; C-C Wang; L Li; J-Z Chen; S-K Yin; J-Z Shao; T-S Huang; P Chen; M-X Guan; J-F Wang
Journal:  Cell Death Differ       Date:  2016-02-26       Impact factor: 15.828

3.  Bi-allelic Pro291Leu variant in KCNQ4 leads to early onset non-syndromic hearing loss.

Authors:  Memoona Ramzan; Hafiza Idrees; Ghulam Mujtaba; Nara Sobreira; P Dane Witmer; Sadaf Naz
Journal:  Gene       Date:  2019-04-24       Impact factor: 3.688

4.  Genomic analysis of inherited hearing loss in the Palestinian population.

Authors:  Amal Abu Rayyan; Lara Kamal; Silvia Casadei; Zippora Brownstein; Fouad Zahdeh; Hashem Shahin; Christina Canavati; Dima Dweik; Tamara Jaraysa; Grace Rabie; Ryan J Carlson; Suleyman Gulsuner; Ming K Lee; Karen B Avraham; Tom Walsh; Mary-Claire King; Moien N Kanaan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-08-03       Impact factor: 11.205

5.  Phenotype of Usher syndrome type II assosiated with compound missense mutations of c.721 C>T and c.1969 C>T in MYO7A in a Chinese Usher syndrome family.

Authors:  Wei Zhai; Xin Jin; Yan Gong; Ling-Hui Qu; Chen Zhao; Zhao-Hui Li
Journal:  Int J Ophthalmol       Date:  2015-08-18       Impact factor: 1.779

6.  Mutational Spectrum of MYO15A and the Molecular Mechanisms of DFNB3 Human Deafness.

Authors:  Atteeq U Rehman; Jonathan E Bird; Rabia Faridi; Mohsin Shahzad; Sujay Shah; Kwanghyuk Lee; Shaheen N Khan; Ayesha Imtiaz; Zubair M Ahmed; Saima Riazuddin; Regie Lyn P Santos-Cortez; Wasim Ahmad; Suzanne M Leal; Sheikh Riazuddin; Thomas B Friedman
Journal:  Hum Mutat       Date:  2016-08-21       Impact factor: 4.878

7.  The GPSM2/LGN GoLoco motifs are essential for hearing.

Authors:  Yoni Bhonker; Amal Abu-Rayyan; Kathy Ushakov; Liat Amir-Zilberstein; Shaked Shivatzki; Ofer Yizhar-Barnea; Tal Elkan-Miller; Einav Tayeb-Fligelman; Sun Myoung Kim; Meytal Landau; Moien Kanaan; Ping Chen; Fumio Matsuzaki; David Sprinzak; Karen B Avraham
Journal:  Mamm Genome       Date:  2015-12-11       Impact factor: 2.957

8.  Spectrum of genes for inherited hearing loss in the Israeli Jewish population, including the novel human deafness gene ATOH1.

Authors:  Zippora Brownstein; Suleyman Gulsuner; Tom Walsh; Fábio T A Martins; Shahar Taiber; Ofer Isakov; Ming K Lee; Mor Bordeynik-Cohen; Maria Birkan; Weise Chang; Silvia Casadei; Nada Danial-Farran; Amal Abu-Rayyan; Ryan Carlson; Lara Kamal; Asgeir Ö Arnthórsson; Meirav Sokolov; Dror Gilony; Noga Lipschitz; Moshe Frydman; Bella Davidov; Michal Macarov; Michal Sagi; Chana Vinkler; Hana Poran; Reuven Sharony; Nadra Samra; Na'ama Zvi; Hagit Baris-Feldman; Amihood Singer; Ophir Handzel; Ronna Hertzano; Doaa Ali-Naffaa; Noa Ruhrman-Shahar; Ory Madgar; Efrat Sofrin-Drucker; Amir Peleg; Morad Khayat; Mordechai Shohat; Lina Basel-Salmon; Elon Pras; Dorit Lev; Michael Wolf; Eirikur Steingrimsson; Noam Shomron; Matthew W Kelley; Moien N Kanaan; Stavit Allon-Shalev; Mary-Claire King; Karen B Avraham
Journal:  Clin Genet       Date:  2020-08-24       Impact factor: 4.296

9.  Identification of a Novel MYO15A Mutation in a Chinese Family with Autosomal Recessive Nonsyndromic Hearing Loss.

Authors:  Hong Xia; Xiangjun Huang; Yi Guo; Pengzhi Hu; Guangxiang He; Xiong Deng; Hongbo Xu; Zhijian Yang; Hao Deng
Journal:  PLoS One       Date:  2015-08-26       Impact factor: 3.240

10.  The effect of novel mutations on the structure and enzymatic activity of unconventional myosins associated with autosomal dominant non-syndromic hearing loss.

Authors:  Tae-Jun Kwon; Se-Kyung Oh; Hong-Joon Park; Osamu Sato; Hanka Venselaar; Soo Young Choi; SungHee Kim; Kyu-Yup Lee; Jinwoong Bok; Sang-Heun Lee; Gert Vriend; Mitsuo Ikebe; Un-Kyung Kim; Jae Young Choi
Journal:  Open Biol       Date:  2014-07       Impact factor: 6.411

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