Literature DB >> 24100564

Overexpression, crystallization and preliminary X-ray crystallographic analysis of a putative xylose isomerase from Bacteroides thetaiotaomicron.

Jea-Won Cho1, Byeong-Gu Han, Sang Youn Park, Seung Jun Kim, Myoung-Dong Kim, Byung Il Lee.   

Abstract

Bacteroides thetaiotaomicron BT0793, a putative xylose isomerase, was overexpressed in Escherichia coli, purified and crystallized using polyethylene glycol monomethyl ether 550 as the precipitant. X-ray diffraction data were collected to 2.10 Å resolution at 100 K using synchrotron X-rays. The crystal was found to belong to space group P1, with unit-cell parameters a=96.3, b=101.7, c=108.3 Å, α=82.8, β=68.2, γ=83.0°. The asymmetric unit contained eight subunits of xylose isomerase with a crystal volume per protein weight (VM) of 2.38 Å3 Da(-1) and a solvent content of 48.3%.

Entities:  

Keywords:  BT0793; Bacteroides thetaiotaomicron; glucose isomerase; xylose isomerase

Mesh:

Substances:

Year:  2013        PMID: 24100564      PMCID: PMC3792672          DOI: 10.1107/S1744309113023877

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  10 in total

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Journal:  Science       Date:  2003-03-28       Impact factor: 47.728

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Journal:  Proc Natl Acad Sci U S A       Date:  1990-02       Impact factor: 11.205

5.  Solvent content of protein crystals.

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Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

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8.  X-ray crystallographic structures of D-xylose isomerase-substrate complexes position the substrate and provide evidence for metal movement during catalysis.

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Journal:  Biochemistry       Date:  1994-05-10       Impact factor: 3.162

9.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
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Authors:  Ronald E Hector; Bruce S Dien; Michael A Cotta; Jeffrey A Mertens
Journal:  Biotechnol Biofuels       Date:  2013-05-30       Impact factor: 6.040

  10 in total
  1 in total

1.  Pentose degradation in archaea: Halorhabdus species degrade D-xylose, L-arabinose and D-ribose via bacterial-type pathways.

Authors:  Jan-Moritz Sutter; Ulrike Johnsen; Andreas Reinhardt; Peter Schönheit
Journal:  Extremophiles       Date:  2020-08-05       Impact factor: 2.395

  1 in total

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