| Literature DB >> 24099150 |
Lintao Sai1, Jintang Sun, Lihua Shao, Shuai Chen, Haihong Liu, Lixian Ma.
Abstract
BACKGROUND: Acute gastroenteritis caused by bacteria, virus and parasite is an important cause of childhood morbidity and mortality in developing countries. Rotavirus and norovirus have been recognized as the most common pathogens causing acute gastroenteritis among children. However, there is still no valuable data about infections of rotavirus and norovirus in children in Ji'nan, an eastern city in China. The aims of the present study are to determine the incidence of rotavirus and norovirus associated acute gastroenteritis in Ji'nan among children, to characterize rotavirus and norovirus strains circulating during this period; and to provide useful epidemiological and clinical data.Entities:
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Year: 2013 PMID: 24099150 PMCID: PMC3851746 DOI: 10.1186/1743-422X-10-302
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Age distribution of rotavirus and norovirus infected cases
| 0-5 M | 14 (5.3%) | 5 (6.3%) | 8 (5.2%) | 3 (5.2%) | 6 (5.5%) | 2 (9.1%) |
| 6-12 M | 37 (14.1%) | 20 (25.0%) | 21 (13.7%) | 15 (25.9%) | 16 (14.5%) | 5 (22.7%) |
| 13-24 M | 104 (39.5%) | 26 (32.5%) | 62 (40.5%) | 20 (34.5%) | 42 (38.2%) | 6 (27.3%) |
| 25-36 M | 58 (22.1%) | 19 (23.7%) | 33 (21.6%) | 13 (22.4%) | 25 (22.7%) | 6 (27.3%) |
| 37-48 M | 29 (11.0%) | 8 (10.0%) | 16 (10.5%) | 5 (8.6%) | 13 (11.8%) | 3 (13.6%) |
| 49-60 M | 21 (8.0%) | 2 (2.5%) | 13 (8.5%) | 2 (3.4%) | 8 (7.3%) | 0 (0.0%) |
| Mean age | 24.2 ± 14.0 | 19.9 ± 15.8 | 24.0 ± 14.2 | 19.7 ± 12.8 | 24.5 ± 13.8 | 20.5 ± 13.1 |
Mean age is defined as mean ± standard deviation(M = month).
Figure 1Phylogenetic analysis based on the partial capsid sequences (282 bp). All NoV-positive strains were genotyped. The tree was generated using the neighbor-joining method and the bootstrap values from 1000 replicates were shown on each branch. The reference strains were from NCBI GenBank: DuanBeijing(EU366113), OxfordB1S2(AY587991),Beijing221(EU839584),OH05010VLP(AB685741),Mexico(U22498),MD101-2(AY030312).
Figure 2Monthly distribution of rotavirus and norovirus infections between February 2011 and January 2012. Rates of rotavirus infection: 29.8%; 28.8%; 25.9%; 27.9%; 27.4%; 23.4%; 24.3%; 32.8%; 30.1%; 62.2%; 51.3%; 37.9%. Rates of norovirus infection: 8.5%; 11.5%; 13.0%; 7.4%; 6.5%; 6.3%; 8.6%; 13.4%; 17.2%; 13.5%; 8.9%; 8.2%.
Clinical manifestations of rotavirus and norovirus positive cases
| Diarrhea alone | 39 (14.8%) | 11 (13.8%) | 38 (24.8%) | 11 (18.9%) | 1 (0.9%) | 0 (0.0%) |
| With vomiting | 232 (88.2%) | 54 (67.5%) | 131 (85.6%) | 38 (65.5%) | 101 (91.8%) | 16 (72.7%) |
| With fever Watery stool | 208 (79.1%) 53 (34.6%) | 37 (46.3%) 22 (37.9%) | 114 (74.5%) 48 (43.6%) | 25 (43.1%) 8 (36.4%) | 94 (85.5%) 101 (38.4%) | 12 (54.4%) 30 (37.5%) |
| Diarrhea (episodes/day) | 5.08 ± 1.85 | 4.99 ± 1.55 | 4.34 ± 1.12 | 4.55 ± 1.10 | 6.10 ± 2.15 | 6.14 ± 1.96 |
| 3-4 epi/day | 124 (47.1%) | 35 (43.8%) | 95 (62.1%) | 31 (53.4%) | 29 (26.4%) | 4 (18.2%) |
| 5-6 epi/day | 95 (36.1%) | 37 (46.3%) | 57 (37.3%) | 27 (46.6%) | 38 (34.5%) | 10 (45.5%) |
| > = 7 epi/day | 44 (16.7%) | 8 (10.0%) | 1 (0.6%) | 0 (0.0%) | 43 (39.1%) | 8 (36.3%) |
| Vomiting (episodes/day) | 2.61 ± 1.35 | 2.20 ± 1.47 | 2.21 ± 1.10 | 1.89 ± 1.13 | 3.16 ± 1.52 | 2.94 ± 1.91 |
| 1-2 epi/day | 127 (54.7%) | 36 (66.7%) | 92 (70.2%) | 27 (71.1%) | 35 (34.7%) | 9 (52.7%) |
| 3-4 epi/day | 85 (36.6%) | 15 (27.8%) | 36 (27.5%) | 10 (26.3%) | 49 (48.5%) | 5 (37.6%) |
| > = 5 epi/day | 20 (8.6%) | 3 (5.5%) | 3 (2.3%) | 1 (2.6%) | 17 (16.8%) | 2 (12.5%) |
| Fever degree (°C) | 38.0 ± 0.65 | 37.8 ± 0.62 | 37.9 ± 0.60 | 37.7 ± 0.56 | 38.3 ± 0.64 | 38.1 ± 0.70 |
| <37.5°C | 70 (33.7%) | 19 (51.4%) | 50 (43.9%) | 14 (56.0%) | 20 (21.3%) | 5 (41.7%) |
| 37.5-38.5°C | 77 (37.0%) | 11 (29.7%) | 43 (37.7%) | 8 (32.0%) | 34 (36.2%) | 3 (25.0%) |
| >38.5°C | 61 (29.3%) | 7 (18.9%) | 21 (18.4%) | 3 (12.0%) | 40 (42.5%) | 4 (33.3%) |
Primers used in genotyping for rotavirus
| 9Con1 | G(+) | TAGCTCCTTTTAATGTATGG | - |
| 9Con2 | G(-) | GTATAAAATACTTGCCACCA | 905 |
| 9 T1 | G1(-) | TCTTGTCAAAGCAAATAATG | 159 |
| 9 T2 | G2(-) | GTTAGAAATGATTCTCCACT | 245 |
| 9 T3 | G3(-) | GTCCAGTTGCAGTGTTAGC | 467 |
| 9 T4 | G4(-) | GGGTCGATGGAAAATTCT | 404 |
| 9T9B | G9(-) | TATAAAGTCCATTGCAC | 111 |
| 4Con3 | P(+) | TGGCTTCGCCATTTTATAGACA | - |
| 4Con2 | P(-) | ATTTCGGACCATTTATAACC | 877 |
| 1 T1 | P[8](-) | TCTACTTGGATAACGTGC | 346 |
| 2 T1 | P[4](-) | CTATTGTTAGAGGTTAGAGTC | 484 |
| 3 T1 | P[6](-) | TGTTGATTAGTTGGATTCAA | 268 |