Literature DB >> 24098265

N,N'-(2-Hy-droxy-propane-1,3-di-yl)bis-(2-hy-droxy-benzamide) monohydrate.

Sihem Yebedri1, Samira Louhibi, Sofiane Bouacida, Ali Ourari, Thierry Roisnel.   

Abstract

In the title hydrate, C17H18N2O5·H2O, the complete organic mol-ecule is generated by a crystallographic mirror plane with one C and one O atom lying on the mirror plane. The O atom of the water mol-ecule has m site symmetry. Two symmetry-related intra-molecular O-H⋯O hydrogen bonds complete S(6) rings in the organic mol-ecule. In the crystal, the components are linked into (010) sheets by O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2013        PMID: 24098265      PMCID: PMC3790446          DOI: 10.1107/S1600536813026184

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of similar compounds and their complexes see: Kumar & Debashis (2006 ▶); Azam et al. (2012 ▶); Sarkar (1999 ▶); Louhibi et al. (2007 ▶); Kui et al. (2009 ▶).

Experimental

Crystal data

C17H18N2O5·H2O M = 348.35 Orthorhombic, a = 12.8969 (10) Å b = 28.001 (2) Å c = 4.5330 (4) Å V = 1637.0 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 150 K 0.38 × 0.12 × 0.04 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2011 ▶) T min = 0.877, T max = 0.996 7880 measured reflections 1904 independent reflections 1195 reflections with I > 2σ(I) R int = 0.062

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.123 S = 1.04 1904 reflections 124 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2011 ▶); cell refinement: SAINT (Bruker, 2011 ▶); data reduction: SAINT; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and CRYSCAL (T. Roisnel, local program). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536813026184/hb7142sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813026184/hb7142Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813026184/hb7142Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18N2O5·H2OF(000) = 736
Mr = 348.35Dx = 1.413 Mg m3
Orthorhombic, PnmaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2nCell parameters from 951 reflections
a = 12.8969 (10) Åθ = 3.2–21.6°
b = 28.001 (2) ŵ = 0.11 mm1
c = 4.5330 (4) ÅT = 150 K
V = 1637.0 (2) Å3Prism, yellow
Z = 40.38 × 0.12 × 0.04 mm
Bruker APEXII diffractometer1195 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.062
CCD rotation images, thin slices scansθmax = 27.4°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Bruker, 2011)h = −16→15
Tmin = 0.877, Tmax = 0.996k = −33→36
7880 measured reflectionsl = −3→5
1904 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0542P)2] where P = (Fo2 + 2Fc2)/3
1904 reflections(Δ/σ)max < 0.001
124 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.39517 (14)0.250000.2499 (4)0.0247 (6)
O60.12018 (10)0.17317 (5)−0.0499 (3)0.0305 (5)
O13−0.01478 (10)0.12722 (5)0.2259 (4)0.0365 (5)
N40.29166 (11)0.16318 (5)0.0274 (3)0.0222 (5)
C20.3155 (2)0.250000.0315 (6)0.0220 (8)
C30.31907 (14)0.20435 (6)−0.1551 (4)0.0231 (6)
C50.19276 (14)0.15119 (6)0.0789 (4)0.0221 (6)
C70.16854 (13)0.11226 (6)0.2905 (4)0.0211 (6)
C80.24447 (14)0.08491 (6)0.4318 (4)0.0246 (6)
C90.21836 (16)0.04885 (7)0.6277 (5)0.0299 (7)
C100.11462 (16)0.03987 (7)0.6864 (5)0.0324 (7)
C110.03789 (16)0.06622 (7)0.5520 (5)0.0324 (7)
C120.06373 (14)0.10227 (7)0.3538 (5)0.0266 (6)
O1W0.08072 (15)0.250000.5613 (5)0.0345 (7)
H10.460 (2)0.250000.145 (7)0.0370*
H20.247660.250000.138380.0264*
H3A0.269820.20707−0.321770.0278*
H3B0.389590.20000−0.237080.0278*
H40.341480.145810.105450.0266*
H80.315540.091180.392630.0295*
H90.270950.030490.720840.0359*
H100.096310.015260.820910.0389*
H11−0.032860.059780.594560.0389*
H130.010030.149280.121990.0547*
H1W0.0926 (17)0.2238 (8)0.677 (6)0.0517*
U11U22U33U12U13U23
O10.0203 (10)0.0348 (11)0.0189 (11)0.00000.0017 (9)0.0000
O60.0194 (7)0.0361 (8)0.0359 (9)0.0012 (6)−0.0039 (7)0.0057 (7)
O130.0166 (7)0.0423 (9)0.0506 (11)−0.0004 (6)0.0023 (7)0.0076 (8)
N40.0185 (8)0.0223 (8)0.0258 (10)0.0002 (6)0.0017 (7)0.0005 (7)
C20.0183 (13)0.0282 (14)0.0196 (15)0.00000.0013 (12)0.0000
C30.0206 (10)0.0277 (10)0.0211 (10)−0.0012 (8)0.0026 (9)0.0016 (9)
C50.0208 (9)0.0252 (10)0.0202 (10)−0.0002 (8)0.0012 (9)−0.0063 (9)
C70.0196 (9)0.0225 (9)0.0211 (11)−0.0024 (7)0.0020 (9)−0.0043 (8)
C80.0205 (10)0.0272 (10)0.0262 (11)−0.0032 (7)0.0014 (9)−0.0036 (9)
C90.0323 (11)0.0277 (11)0.0298 (12)−0.0008 (9)−0.0029 (10)−0.0020 (9)
C100.0375 (12)0.0319 (12)0.0279 (13)−0.0092 (9)0.0060 (10)0.0005 (10)
C110.0263 (11)0.0357 (12)0.0353 (13)−0.0105 (9)0.0079 (10)−0.0018 (10)
C120.0218 (10)0.0290 (11)0.0291 (12)−0.0010 (8)0.0009 (10)−0.0072 (9)
O1W0.0306 (11)0.0388 (12)0.0340 (14)0.0000−0.0103 (10)0.0000
O1—C21.427 (3)C7—C81.399 (2)
O6—C51.263 (2)C7—C121.410 (2)
O13—C121.360 (2)C8—C91.386 (3)
O1—H10.96 (3)C9—C101.387 (3)
O13—H130.8400C10—C111.377 (3)
O1W—H1Wi0.92 (2)C11—C121.392 (3)
O1W—H1W0.92 (2)C2—H21.0000
N4—C51.340 (2)C3—H3B0.9900
N4—C31.462 (2)C3—H3A0.9900
N4—H40.8800C8—H80.9500
C2—C31.534 (2)C9—H90.9500
C2—C3i1.534 (2)C10—H100.9500
C5—C71.485 (2)C11—H110.9500
C2—O1—H1106.4 (18)C7—C12—C11120.32 (18)
C12—O13—H13109.00O13—C12—C7121.68 (18)
H1W—O1W—H1Wi107 (2)O13—C12—C11118.00 (17)
C3—N4—C5121.76 (14)O1—C2—H2107.00
C3—N4—H4119.00C3i—C2—H2107.00
C5—N4—H4119.00C3—C2—H2107.00
O1—C2—C3i111.17 (13)N4—C3—H3B110.00
O1—C2—C3111.17 (13)C2—C3—H3A110.00
C3—C2—C3i112.93 (19)N4—C3—H3A110.00
N4—C3—C2109.75 (15)H3A—C3—H3B108.00
O6—C5—N4120.19 (16)C2—C3—H3B110.00
N4—C5—C7119.79 (15)C7—C8—H8119.00
O6—C5—C7120.01 (16)C9—C8—H8119.00
C5—C7—C12118.60 (16)C10—C9—H9120.00
C8—C7—C12118.00 (16)C8—C9—H9120.00
C5—C7—C8123.40 (15)C9—C10—H10120.00
C7—C8—C9121.48 (17)C11—C10—H10120.00
C8—C9—C10119.29 (19)C10—C11—H11120.00
C9—C10—C11120.75 (19)C12—C11—H11120.00
C10—C11—C12120.15 (19)
C3—N4—C5—O65.8 (3)C12—C7—C8—C90.3 (3)
C3—N4—C5—C7−173.61 (15)C5—C7—C12—O130.2 (3)
C5—N4—C3—C283.3 (2)C5—C7—C12—C11−179.68 (18)
O1—C2—C3—N467.2 (2)C8—C7—C12—O13179.97 (19)
C3i—C2—C3—N4−167.07 (16)C8—C7—C12—C110.1 (3)
O6—C5—C7—C8177.11 (17)C7—C8—C9—C10−0.4 (3)
O6—C5—C7—C12−3.1 (3)C8—C9—C10—C110.2 (3)
N4—C5—C7—C8−3.5 (3)C9—C10—C11—C120.2 (3)
N4—C5—C7—C12176.29 (17)C10—C11—C12—O13179.8 (2)
C5—C7—C8—C9−179.93 (17)C10—C11—C12—C7−0.4 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O1Wii0.96 (3)1.82 (3)2.778 (3)179 (3)
O1W—H1W···O6iii0.92 (2)1.92 (2)2.827 (2)174 (2)
O13—H13···O60.841.752.500 (2)147
N4—H4···O13iv0.882.072.915 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O1W i 0.96 (3)1.82 (3)2.778 (3)179 (3)
O1W—H1W⋯O6ii 0.92 (2)1.92 (2)2.827 (2)174 (2)
O13—H13⋯O60.841.752.500 (2)147
N4—H4⋯O13iii 0.882.072.915 (2)160

Symmetry codes: (i) ; (ii) ; (iii) .

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