Literature DB >> 24098261

3'-[(1H-Indol-3-yl)carbon-yl]-1'-methyl-2-oxo-4'-(thio-phen-2-yl)-spiro-[indoline-3,2'-pyrrolidine]-3'-carbo-nitrile.

S Antony Inglebert1, Yuvaraj Arun, K Sethusankar, Paramasivam T Perumal.   

Abstract

In the title compound, C26H20N4O2S, the central pyrrolidine ring adopts a twist conformation on the C-C bond involving the spiro C atom. Its mean plane makes dihedral angles of 78.83 (14), 65.91 (15) and 44.49 (18)° with the mean planes of the adjacent oxindole ring system, the indole system and the thio-phene ring, respectively. The indole and indoline units are essentially planar, with maximum deviations of 0.019 (3) and 0.090 (3) Å, respectively. In the oxindole fused-ring system, the pyrrole ring adopts an envelope conformation with the spiro C atom as the flap. In the crystal, pairs of N-H⋯O hydrogen bonds link the mol-ecules, forming inversion dimers with an R (2) 2(8) ring motif. The dimers are linked by further N-H⋯O hydrogen bonds, forming a two-dimensional network lying parallel to (100).

Entities:  

Year:  2013        PMID: 24098261      PMCID: PMC3790442          DOI: 10.1107/S1600536813025890

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to indole derivatives and their biological activity, see: Srivastava et al. (2011 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶). For a related structure, see: Inglebert et al. (2013 ▶).

Experimental

Crystal data

C26H20N4O2S M = 452.52 Monoclinic, a = 11.6215 (6) Å b = 17.1050 (11) Å c = 12.3381 (8) Å β = 114.431 (2)° V = 2233.0 (2) Å3 Z = 4 Mo Kα radiation μ = 0.18 mm−1 T = 293 K 0.35 × 0.30 × 0.25 mm

Data collection

Bruker APEXII2 CCD difractometer diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.941, T max = 0.957 16319 measured reflections 5279 independent reflections 3636 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.073 wR(F 2) = 0.252 S = 1.07 5279 reflections 306 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.15 e Å−3 Δρmin = −0.98 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813025890/su2642sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025890/su2642Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H20N4O2SF(000) = 944
Mr = 452.52Dx = 1.346 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5279 reflections
a = 11.6215 (6) Åθ = 2.2–27.9°
b = 17.1050 (11) ŵ = 0.18 mm1
c = 12.3381 (8) ÅT = 293 K
β = 114.431 (2)°Block, colourless
V = 2233.0 (2) Å30.35 × 0.30 × 0.25 mm
Z = 4
Bruker APEXII2 CCD difractometer diffractometer5279 independent reflections
Radiation source: fine-focus sealed tube3636 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
ω and φ scanθmax = 27.9°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −15→8
Tmin = 0.941, Tmax = 0.957k = −21→22
16319 measured reflectionsl = −14→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.073Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.252H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.1409P)2 + 1.6573P] where P = (Fo2 + 2Fc2)/3
5279 reflections(Δ/σ)max = 0.003
306 parametersΔρmax = 1.15 e Å3
5 restraintsΔρmin = −0.98 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C50.9175 (3)0.04509 (16)0.1198 (3)0.0313 (6)
H50.85260.03710.03900.038*
C60.9536 (3)−0.03507 (18)0.1780 (3)0.0403 (7)
H6A0.9204−0.07600.11880.048*
H6B1.0448−0.04030.21700.048*
C70.8686 (3)−0.12000 (19)0.2877 (4)0.0502 (8)
H7A0.9413−0.15290.30640.075*
H7B0.7999−0.13970.21800.075*
H7C0.8446−0.11970.35340.075*
C80.7970 (2)0.01482 (16)0.2360 (2)0.0289 (6)
C90.8532 (2)0.08688 (16)0.1927 (2)0.0277 (6)
C100.7470 (2)0.14477 (16)0.1152 (2)0.0303 (6)
C110.6903 (3)0.19866 (17)0.1672 (2)0.0323 (6)
C120.5730 (2)0.24011 (16)0.1035 (2)0.0311 (6)
C130.4806 (3)0.24014 (19)−0.0133 (3)0.0394 (7)
H130.48820.2079−0.07060.047*
C140.3773 (3)0.2892 (2)−0.0420 (3)0.0474 (8)
H140.31530.2895−0.11960.057*
C150.3641 (3)0.3378 (2)0.0420 (3)0.0479 (8)
H150.29460.37100.01920.058*
C160.4511 (3)0.33779 (19)0.1576 (3)0.0446 (8)
H160.44130.36940.21450.054*
C170.5550 (3)0.28865 (18)0.1871 (3)0.0361 (6)
C180.7336 (3)0.22322 (19)0.2844 (3)0.0419 (7)
H180.80710.20550.34630.050*
C190.7534 (2)0.03331 (17)0.3323 (2)0.0313 (6)
C200.8205 (3)0.0492 (2)0.4520 (3)0.0405 (7)
H200.90830.04680.48700.049*
C210.7536 (4)0.0689 (2)0.5186 (3)0.0520 (9)
H210.79740.08070.59890.062*
C220.6227 (3)0.0714 (2)0.4675 (3)0.0519 (9)
H220.57990.08560.51360.062*
C230.5554 (3)0.0530 (2)0.3496 (3)0.0461 (8)
H230.46760.05330.31560.055*
C240.6223 (3)0.03431 (18)0.2832 (3)0.0344 (6)
C250.6696 (2)−0.00651 (17)0.1305 (2)0.0320 (6)
C260.9511 (3)0.12412 (17)0.2976 (3)0.0338 (6)
N10.8989 (2)−0.04069 (14)0.2652 (2)0.0314 (5)
N21.0305 (3)0.1513 (2)0.3775 (3)0.0536 (8)
N30.5757 (2)0.01076 (17)0.1639 (2)0.0384 (6)
N40.6549 (3)0.27593 (17)0.2955 (2)0.0432 (6)
O10.7082 (2)0.13787 (13)0.00656 (18)0.0420 (5)
O20.65774 (19)−0.03273 (14)0.03448 (19)0.0431 (6)
C31.1633 (3)0.07184 (19)0.1643 (3)0.0387 (7)
H31.20420.02880.21000.046*
C11.1410 (4)0.1943 (2)0.0621 (4)0.0541 (9)
H11.16830.23850.03560.065*
C21.2182 (3)0.1393 (2)0.1252 (3)0.0540 (9)
H21.30450.14230.14500.065*
C41.0225 (3)0.09175 (19)0.1099 (3)0.0369 (6)
S10.98893 (10)0.17802 (6)0.03333 (12)0.0667 (4)
H3A0.4965 (19)0.008 (4)0.130 (5)0.110 (19)*
H4A0.669 (4)0.303 (2)0.357 (3)0.066 (13)*
U11U22U33U12U13U23
C50.0313 (13)0.0332 (14)0.0297 (14)0.0053 (11)0.0129 (11)−0.0025 (12)
C60.0417 (15)0.0360 (16)0.0468 (18)0.0096 (12)0.0220 (14)0.0045 (14)
C70.0495 (18)0.0358 (17)0.066 (2)0.0044 (14)0.0248 (17)0.0119 (16)
C80.0236 (11)0.0356 (14)0.0229 (12)0.0021 (10)0.0048 (10)0.0001 (11)
C90.0257 (11)0.0327 (13)0.0229 (12)0.0042 (10)0.0084 (10)0.0002 (11)
C100.0318 (12)0.0323 (14)0.0248 (13)0.0061 (11)0.0095 (11)0.0021 (11)
C110.0337 (13)0.0346 (14)0.0265 (13)0.0070 (11)0.0103 (11)0.0001 (11)
C120.0318 (13)0.0314 (14)0.0314 (14)0.0035 (11)0.0142 (11)0.0020 (11)
C130.0350 (14)0.0453 (17)0.0357 (16)0.0043 (12)0.0123 (13)0.0011 (14)
C140.0303 (14)0.055 (2)0.0478 (19)0.0043 (13)0.0066 (13)0.0085 (16)
C150.0341 (15)0.0502 (19)0.062 (2)0.0124 (13)0.0223 (15)0.0099 (17)
C160.0448 (16)0.0409 (17)0.056 (2)0.0098 (14)0.0284 (16)0.0002 (15)
C170.0386 (14)0.0352 (15)0.0368 (16)0.0033 (12)0.0180 (13)−0.0011 (13)
C180.0439 (16)0.0426 (17)0.0344 (16)0.0111 (13)0.0114 (13)−0.0040 (13)
C190.0306 (13)0.0366 (15)0.0249 (13)0.0020 (11)0.0096 (11)0.0030 (11)
C200.0363 (14)0.0528 (19)0.0269 (14)0.0078 (13)0.0076 (12)0.0031 (13)
C210.058 (2)0.070 (2)0.0266 (15)0.0113 (18)0.0167 (15)0.0025 (16)
C220.056 (2)0.068 (2)0.0418 (19)0.0141 (17)0.0301 (17)0.0036 (17)
C230.0346 (15)0.060 (2)0.0468 (19)0.0058 (14)0.0197 (14)0.0023 (16)
C240.0307 (13)0.0400 (15)0.0305 (14)0.0023 (11)0.0106 (11)0.0029 (12)
C250.0271 (12)0.0350 (14)0.0280 (14)0.0000 (11)0.0056 (11)−0.0010 (12)
C260.0300 (13)0.0369 (15)0.0329 (15)0.0036 (11)0.0114 (12)−0.0023 (12)
N10.0288 (11)0.0308 (12)0.0310 (12)0.0057 (9)0.0088 (10)0.0044 (10)
N20.0381 (14)0.065 (2)0.0456 (16)−0.0050 (13)0.0052 (13)−0.0178 (15)
N30.0242 (11)0.0548 (16)0.0309 (13)0.0000 (11)0.0061 (10)−0.0052 (12)
N40.0483 (15)0.0466 (15)0.0318 (14)0.0116 (12)0.0135 (12)−0.0089 (12)
O10.0500 (12)0.0498 (13)0.0247 (10)0.0188 (10)0.0139 (9)0.0043 (9)
O20.0329 (10)0.0571 (14)0.0322 (11)0.0007 (9)0.0064 (9)−0.0134 (10)
C30.0327 (11)0.0462 (16)0.0462 (17)−0.0091 (12)0.0255 (12)−0.0036 (14)
C10.057 (2)0.0451 (19)0.069 (2)−0.0063 (16)0.0351 (19)−0.0027 (18)
C20.0441 (18)0.057 (2)0.066 (2)−0.0071 (15)0.0274 (17)0.0100 (18)
C40.0348 (11)0.0456 (14)0.0338 (15)0.0016 (12)0.0177 (11)−0.0060 (10)
S10.0605 (6)0.0559 (6)0.0906 (9)0.0067 (4)0.0380 (6)0.0152 (5)
C5—C41.505 (4)C16—C171.390 (4)
C5—C61.524 (4)C16—H160.9300
C5—C91.560 (4)C17—N41.379 (4)
C5—H50.9800C18—N41.331 (4)
C6—N11.462 (4)C18—H180.9300
C6—H6A0.9700C19—C201.382 (4)
C6—H6B0.9700C19—C241.388 (4)
C7—N11.457 (4)C20—C211.385 (5)
C7—H7A0.9600C20—H200.9300
C7—H7B0.9600C21—C221.386 (5)
C7—H7C0.9600C21—H210.9300
C8—N11.442 (3)C22—C231.372 (5)
C8—C191.506 (4)C22—H220.9300
C8—C251.557 (3)C23—C241.379 (4)
C8—C91.587 (4)C23—H230.9300
C9—C261.469 (4)C24—N31.401 (4)
C9—C101.562 (4)C25—O21.220 (3)
C10—O11.231 (3)C25—N31.349 (4)
C10—C111.430 (4)C26—N21.135 (4)
C11—C181.385 (4)N3—H3A0.84 (2)
C11—C121.446 (4)N4—H4A0.844 (19)
C12—C131.396 (4)C3—C21.492 (4)
C12—C171.405 (4)C3—C41.528 (4)
C13—C141.385 (4)C3—H30.9300
C13—H130.9300C1—C21.310 (5)
C14—C151.386 (5)C1—S11.676 (4)
C14—H140.9300C1—H10.9300
C15—C161.365 (5)C2—H20.9300
C15—H150.9300C4—S11.708 (3)
C4—C5—C6116.2 (2)N4—C17—C16129.9 (3)
C4—C5—C9113.7 (2)N4—C17—C12107.3 (2)
C6—C5—C9104.2 (2)C16—C17—C12122.8 (3)
C4—C5—H5107.5N4—C18—C11110.1 (3)
C6—C5—H5107.5N4—C18—H18124.9
C9—C5—H5107.5C11—C18—H18124.9
N1—C6—C5106.7 (2)C20—C19—C24119.8 (3)
N1—C6—H6A110.4C20—C19—C8131.2 (3)
C5—C6—H6A110.4C24—C19—C8109.0 (2)
N1—C6—H6B110.4C19—C20—C21118.3 (3)
C5—C6—H6B110.4C19—C20—H20120.8
H6A—C6—H6B108.6C21—C20—H20120.8
N1—C7—H7A109.5C20—C21—C22121.2 (3)
N1—C7—H7B109.5C20—C21—H21119.4
H7A—C7—H7B109.5C22—C21—H21119.4
N1—C7—H7C109.5C23—C22—C21120.8 (3)
H7A—C7—H7C109.5C23—C22—H22119.6
H7B—C7—H7C109.5C21—C22—H22119.6
N1—C8—C19116.8 (2)C22—C23—C24118.0 (3)
N1—C8—C25116.9 (2)C22—C23—H23121.0
C19—C8—C25101.2 (2)C24—C23—H23121.0
N1—C8—C9100.7 (2)C23—C24—C19122.0 (3)
C19—C8—C9115.0 (2)C23—C24—N3128.6 (3)
C25—C8—C9106.4 (2)C19—C24—N3109.4 (2)
C26—C9—C5109.0 (2)O2—C25—N3126.6 (3)
C26—C9—C10113.1 (2)O2—C25—C8125.8 (2)
C5—C9—C10112.5 (2)N3—C25—C8107.6 (2)
C26—C9—C8108.5 (2)N2—C26—C9177.1 (3)
C5—C9—C8101.5 (2)C8—N1—C7115.0 (2)
C10—C9—C8111.6 (2)C8—N1—C6109.6 (2)
O1—C10—C11121.4 (2)C7—N1—C6114.5 (3)
O1—C10—C9116.5 (2)C25—N3—C24112.0 (2)
C11—C10—C9121.9 (2)C25—N3—H3A134 (4)
C18—C11—C10128.8 (3)C24—N3—H3A114 (4)
C18—C11—C12105.8 (2)C18—N4—C17110.3 (3)
C10—C11—C12125.3 (2)C18—N4—H4A125 (3)
C13—C12—C17118.2 (3)C17—N4—H4A124 (3)
C13—C12—C11135.3 (3)C2—C3—C4102.1 (3)
C17—C12—C11106.5 (2)C2—C3—H3129.0
C14—C13—C12118.7 (3)C4—C3—H3129.0
C14—C13—H13120.7C2—C1—S1114.2 (3)
C12—C13—H13120.7C2—C1—H1122.9
C13—C14—C15121.6 (3)S1—C1—H1122.9
C13—C14—H14119.2C1—C2—C3117.9 (3)
C15—C14—H14119.2C1—C2—H2121.1
C16—C15—C14121.2 (3)C3—C2—H2121.1
C16—C15—H15119.4C5—C4—C3127.1 (3)
C14—C15—H15119.4C5—C4—S1119.7 (2)
C15—C16—C17117.5 (3)C3—C4—S1113.2 (2)
C15—C16—H16121.3C1—S1—C492.66 (17)
C17—C16—H16121.3
C4—C5—C6—N1132.7 (3)N1—C8—C19—C24−136.3 (3)
C9—C5—C6—N16.8 (3)C25—C8—C19—C24−8.2 (3)
C4—C5—C9—C26−41.6 (3)C9—C8—C19—C24106.0 (3)
C6—C5—C9—C2685.8 (3)C24—C19—C20—C21−2.6 (5)
C4—C5—C9—C1084.7 (3)C8—C19—C20—C21176.3 (3)
C6—C5—C9—C10−147.9 (2)C19—C20—C21—C221.1 (6)
C4—C5—C9—C8−155.9 (2)C20—C21—C22—C231.1 (6)
C6—C5—C9—C8−28.5 (3)C21—C22—C23—C24−1.8 (6)
N1—C8—C9—C26−74.4 (3)C22—C23—C24—C190.3 (5)
C19—C8—C9—C2652.0 (3)C22—C23—C24—N3177.2 (3)
C25—C8—C9—C26163.2 (2)C20—C19—C24—C231.9 (5)
N1—C8—C9—C540.3 (2)C8—C19—C24—C23−177.1 (3)
C19—C8—C9—C5166.8 (2)C20—C19—C24—N3−175.5 (3)
C25—C8—C9—C5−82.1 (2)C8—C19—C24—N35.4 (3)
N1—C8—C9—C10160.4 (2)N1—C8—C25—O2−44.9 (4)
C19—C8—C9—C10−73.2 (3)C19—C8—C25—O2−172.9 (3)
C25—C8—C9—C1038.0 (3)C9—C8—C25—O266.6 (4)
C26—C9—C10—O1139.7 (3)N1—C8—C25—N3136.3 (3)
C5—C9—C10—O115.6 (4)C19—C8—C25—N38.3 (3)
C8—C9—C10—O1−97.7 (3)C9—C8—C25—N3−112.1 (3)
C26—C9—C10—C11−45.4 (4)C19—C8—N1—C765.8 (3)
C5—C9—C10—C11−169.4 (3)C25—C8—N1—C7−54.3 (3)
C8—C9—C10—C1177.2 (3)C9—C8—N1—C7−169.0 (2)
O1—C10—C11—C18−168.2 (3)C19—C8—N1—C6−163.6 (2)
C9—C10—C11—C1817.1 (5)C25—C8—N1—C676.3 (3)
O1—C10—C11—C1210.7 (5)C9—C8—N1—C6−38.4 (3)
C9—C10—C11—C12−164.0 (3)C5—C6—N1—C820.8 (3)
C18—C11—C12—C13−176.8 (3)C5—C6—N1—C7151.7 (3)
C10—C11—C12—C134.1 (5)O2—C25—N3—C24175.5 (3)
C18—C11—C12—C171.3 (3)C8—C25—N3—C24−5.7 (3)
C10—C11—C12—C17−177.8 (3)C23—C24—N3—C25−176.9 (3)
C17—C12—C13—C141.5 (4)C19—C24—N3—C250.3 (4)
C11—C12—C13—C14179.5 (3)C11—C18—N4—C170.5 (4)
C12—C13—C14—C150.0 (5)C16—C17—N4—C18179.4 (3)
C13—C14—C15—C16−1.7 (5)C12—C17—N4—C180.3 (4)
C14—C15—C16—C171.6 (5)S1—C1—C2—C3−1.0 (5)
C15—C16—C17—N4−178.9 (3)C4—C3—C2—C11.1 (4)
C15—C16—C17—C120.1 (5)C6—C5—C4—C3−7.7 (4)
C13—C12—C17—N4177.5 (3)C9—C5—C4—C3113.2 (3)
C11—C12—C17—N4−1.0 (3)C6—C5—C4—S1173.7 (2)
C13—C12—C17—C16−1.6 (5)C9—C5—C4—S1−65.4 (3)
C11—C12—C17—C16179.8 (3)C2—C3—C4—C5−179.4 (3)
C10—C11—C18—N4177.9 (3)C2—C3—C4—S1−0.7 (3)
C12—C11—C18—N4−1.1 (4)C2—C1—S1—C40.5 (3)
N1—C8—C19—C2044.8 (4)C5—C4—S1—C1179.0 (3)
C25—C8—C19—C20172.9 (3)C3—C4—S1—C10.2 (3)
C9—C8—C19—C20−72.9 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3A···O2i0.84 (4)2.12 (5)2.828 (3)142 (5)
N4—H4A···O1ii0.85 (3)1.99 (3)2.829 (3)177 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N3—H3A⋯O2i 0.84 (4)2.12 (5)2.828 (3)142 (5)
N4—H4A⋯O1ii 0.85 (3)1.99 (3)2.829 (3)177 (3)

Symmetry codes: (i) ; (ii) .

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