Literature DB >> 24098255

N-(4-Bromo-phen-yl)-2,6-dimethyl-1,3-dioxan-4-amine.

Zeenat Fatima1, Gottimukkala Rambabu, Bandapalli Palakshi Reddy, Vijayaparthasarathi Vijayakumar, Devadasan Velmurugan.   

Abstract

In the title compound, C12H16BrNO2, the dioxane ring adopts a chair conformation and its mean plane makes a dihedral angle of 60.63 (12)° with the 4-bromo-phenyl ring. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming inversion dimers with an R 2 (2)(8) ring motif. These dimers are consolidated by pairs of C-H⋯O hydrogen bonds with an R 2 (2)(16) ring motif. Adjacent dimers are connected via C-H⋯O hydrogen bonds, forming infinite chains propagating along the c-axis direction.

Entities:  

Year:  2013        PMID: 24098255      PMCID: PMC3790436          DOI: 10.1107/S1600536813025750

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological properties of dioxanes and applications of 1,3-dioxane derivatives, see: Aubele et al. (2005 ▶); Marucci et al. (2005 ▶); Wang et al. (1996a ▶,b ▶); Yuan et al. (2005 ▶). For related crystal structures, see: Chuprunov et al. (1981 ▶); Thevenet et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H16BrNO2 M = 286.17 Monoclinic, a = 9.9367 (5) Å b = 13.5660 (6) Å c = 10.3206 (5) Å β = 115.543 (3)° V = 1255.25 (10) Å3 Z = 4 Mo Kα radiation μ = 3.26 mm−1 T = 293 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.310, T max = 0.746 11981 measured reflections 3119 independent reflections 1819 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.092 S = 1.01 3119 reflections 150 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813025750/su2646sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025750/su2646Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813025750/su2646Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16BrNO2F(000) = 584
Mr = 286.17Dx = 1.514 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3119 reflections
a = 9.9367 (5) Åθ = 2.3–28.4°
b = 13.5660 (6) ŵ = 3.26 mm1
c = 10.3206 (5) ÅT = 293 K
β = 115.543 (3)°Block, colourless
V = 1255.25 (10) Å30.25 × 0.20 × 0.15 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer3119 independent reflections
Radiation source: fine-focus sealed tube1819 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
ω and φ scansθmax = 28.4°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −12→13
Tmin = 0.310, Tmax = 0.746k = −18→15
11981 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.092H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0432P)2 + 0.0602P] where P = (Fo2 + 2Fc2)/3
3119 reflections(Δ/σ)max = 0.001
150 parametersΔρmax = 0.45 e Å3
1 restraintΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br11.07805 (3)0.63232 (2)1.22087 (3)0.07742 (15)
O10.70096 (17)0.52265 (9)0.47016 (15)0.0474 (4)
O20.61959 (17)0.53559 (10)0.22317 (15)0.0488 (4)
N10.6108 (2)0.62162 (13)0.6010 (2)0.0502 (5)
H10.531 (2)0.5954 (17)0.588 (3)0.060*
C10.4240 (3)0.64080 (17)0.0718 (3)0.0640 (7)
H1A0.45660.6270−0.00140.096*
H1B0.38520.70670.05980.096*
H1C0.34750.59490.06420.096*
C20.5537 (3)0.63121 (15)0.2171 (2)0.0497 (6)
H20.62760.68180.22600.060*
C30.5121 (3)0.64209 (15)0.3411 (3)0.0504 (6)
H3A0.47810.70880.34330.060*
H3B0.43110.59730.32820.060*
C40.6445 (3)0.61968 (14)0.4810 (2)0.0461 (5)
H40.72250.66850.49600.055*
C50.7436 (3)0.51969 (17)0.3564 (2)0.0522 (6)
H50.81960.57010.37140.063*
C60.8065 (3)0.4193 (2)0.3537 (3)0.0756 (8)
H6A0.83600.41620.27660.113*
H6B0.73200.37010.33940.113*
H6C0.89170.40750.44320.113*
C70.7211 (3)0.62384 (13)0.7422 (2)0.0433 (5)
C80.6828 (3)0.60493 (15)0.8537 (3)0.0501 (6)
H80.58440.58960.83280.060*
C90.7872 (3)0.60831 (15)0.9954 (3)0.0545 (6)
H90.75940.59441.06870.065*
C100.9320 (3)0.63231 (14)1.0272 (3)0.0504 (6)
C110.9719 (3)0.65323 (19)0.9185 (3)0.0622 (7)
H111.06980.67070.94020.075*
C120.8674 (3)0.64851 (18)0.7771 (3)0.0586 (6)
H120.89600.66220.70420.070*
U11U22U33U12U13U23
Br10.0657 (2)0.1039 (3)0.05105 (18)0.01315 (15)0.01413 (14)−0.00249 (14)
O10.0466 (10)0.0523 (8)0.0450 (8)0.0057 (7)0.0215 (7)0.0021 (7)
O20.0433 (9)0.0577 (9)0.0437 (9)−0.0010 (7)0.0170 (7)−0.0041 (7)
N10.0444 (12)0.0600 (12)0.0494 (11)−0.0045 (9)0.0232 (10)−0.0055 (9)
C10.0644 (18)0.0693 (16)0.0515 (15)0.0022 (13)0.0185 (13)0.0100 (12)
C20.0489 (15)0.0482 (13)0.0496 (13)−0.0078 (10)0.0189 (12)0.0034 (10)
C30.0513 (15)0.0458 (12)0.0521 (14)0.0051 (11)0.0205 (12)0.0013 (10)
C40.0472 (14)0.0483 (12)0.0449 (12)−0.0050 (10)0.0218 (11)−0.0036 (10)
C50.0410 (14)0.0714 (15)0.0454 (13)−0.0020 (11)0.0199 (11)−0.0053 (11)
C60.067 (2)0.0956 (19)0.0612 (17)0.0282 (16)0.0250 (15)−0.0049 (15)
C70.0451 (14)0.0386 (11)0.0480 (12)0.0019 (10)0.0219 (11)−0.0023 (9)
C80.0457 (15)0.0546 (12)0.0556 (14)−0.0051 (11)0.0273 (12)−0.0005 (11)
C90.0614 (18)0.0605 (14)0.0499 (13)0.0015 (12)0.0319 (13)0.0046 (11)
C100.0494 (15)0.0528 (13)0.0471 (13)0.0079 (11)0.0190 (11)−0.0007 (10)
C110.0418 (15)0.0861 (17)0.0596 (16)−0.0025 (12)0.0226 (13)−0.0010 (13)
C120.0468 (15)0.0854 (17)0.0514 (15)−0.0032 (13)0.0284 (12)0.0014 (12)
Br1—C101.898 (2)C4—H40.9800
O1—C51.410 (2)C5—C61.504 (3)
O1—C41.454 (2)C5—H50.9800
O2—C51.412 (3)C6—H6A0.9600
O2—C21.442 (2)C6—H6B0.9600
N1—C71.396 (3)C6—H6C0.9600
N1—C41.416 (3)C7—C121.379 (3)
N1—H10.824 (16)C7—C81.383 (3)
C1—C21.503 (3)C8—C91.382 (3)
C1—H1A0.9600C8—H80.9300
C1—H1B0.9600C9—C101.369 (4)
C1—H1C0.9600C9—H90.9300
C2—C31.513 (3)C10—C111.371 (3)
C2—H20.9800C11—C121.381 (4)
C3—C41.507 (3)C11—H110.9300
C3—H3A0.9700C12—H120.9300
C3—H3B0.9700
C5—O1—C4110.76 (15)O1—C5—C6108.55 (19)
C5—O2—C2111.66 (16)O2—C5—C6108.37 (19)
C7—N1—C4122.5 (2)O1—C5—H5109.7
C7—N1—H1116.7 (18)O2—C5—H5109.7
C4—N1—H1114.8 (18)C6—C5—H5109.7
C2—C1—H1A109.5C5—C6—H6A109.5
C2—C1—H1B109.5C5—C6—H6B109.5
H1A—C1—H1B109.5H6A—C6—H6B109.5
C2—C1—H1C109.5C5—C6—H6C109.5
H1A—C1—H1C109.5H6A—C6—H6C109.5
H1B—C1—H1C109.5H6B—C6—H6C109.5
O2—C2—C1107.42 (17)C12—C7—C8117.7 (2)
O2—C2—C3109.59 (17)C12—C7—N1122.8 (2)
C1—C2—C3114.0 (2)C8—C7—N1119.4 (2)
O2—C2—H2108.6C9—C8—C7121.6 (2)
C1—C2—H2108.6C9—C8—H8119.2
C3—C2—H2108.6C7—C8—H8119.2
C4—C3—C2110.3 (2)C10—C9—C8119.6 (2)
C4—C3—H3A109.6C10—C9—H9120.2
C2—C3—H3A109.6C8—C9—H9120.2
C4—C3—H3B109.6C9—C10—C11119.9 (2)
C2—C3—H3B109.6C9—C10—Br1119.97 (18)
H3A—C3—H3B108.1C11—C10—Br1120.13 (19)
N1—C4—O1109.21 (16)C10—C11—C12120.3 (2)
N1—C4—C3113.3 (2)C10—C11—H11119.9
O1—C4—C3108.37 (17)C12—C11—H11119.9
N1—C4—H4108.6C7—C12—C11121.0 (2)
O1—C4—H4108.6C7—C12—H12119.5
C3—C4—H4108.6C11—C12—H12119.5
O1—C5—O2110.92 (17)
C5—O2—C2—C1179.79 (18)C2—O2—C5—C6−179.48 (18)
C5—O2—C2—C3−55.9 (2)C4—N1—C7—C1216.4 (3)
O2—C2—C3—C453.0 (2)C4—N1—C7—C8−166.52 (18)
C1—C2—C3—C4173.36 (17)C12—C7—C8—C9−1.4 (3)
C7—N1—C4—O173.0 (2)N1—C7—C8—C9−178.59 (18)
C7—N1—C4—C3−166.05 (17)C7—C8—C9—C101.0 (3)
C5—O1—C4—N1−176.72 (18)C8—C9—C10—C110.3 (3)
C5—O1—C4—C359.4 (2)C8—C9—C10—Br1−177.60 (15)
C2—C3—C4—N1−175.78 (17)C9—C10—C11—C12−1.1 (4)
C2—C3—C4—O1−54.4 (2)Br1—C10—C11—C12176.77 (18)
C4—O1—C5—O2−63.2 (2)C8—C7—C12—C110.6 (3)
C4—O1—C5—C6177.81 (19)N1—C7—C12—C11177.6 (2)
C2—O2—C5—O161.5 (2)C10—C11—C12—C70.7 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.82 (2)2.66 (2)3.465 (2)168 (2)
C8—H8···O2i0.932.513.352 (3)150
C9—H9···O2ii0.932.653.557 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.82 (2)2.66 (2)3.465 (2)168 (2)
C8—H8⋯O2i 0.932.513.352 (3)150
C9—H9⋯O2ii 0.932.653.557 (3)165

Symmetry codes: (i) ; (ii) .

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