Literature DB >> 24098252

Di-hydro-cyclam dimaleate [H2(cyclam)(maleate)2].

Mbonzi Ombenga Mireille Ninon1, Mohammed Fahim, Mohammed Lachkar, José Luis Marco Contelles, Josefina Perles, Brahim El Bali.   

Abstract

The asymmetric unit of the title mol-ecular salt [systematic name: 1,4,8,11-tetraazacyclotetradecane-1,8-diium bis(3-carboxy-prop-2-enoate)], C10H26N4 (2+)·2C4H3O4 (-), contains two half-cations (both completed by crystallographic inversion symmetry) and two maleate anions. The cyclam macrocycles adopt trans-III conformations, supported by two intra-molecular N-H⋯O hydrogen bonds. The O-bonded H atom of each maleate ion is disordered over two positions with an occupancy ratio of 0.61 (5):0.39 (5): each one generates an intra-molecular O-H⋯O hydrogen bond. In the crystal, the cations are linked to the anions by N-H⋯O hydrogen bonds, generating [001] chains.

Entities:  

Year:  2013        PMID: 24098252      PMCID: PMC3790433          DOI: 10.1107/S1600536813025580

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related cyclam crystal structures, see: Robinson et al. (1989) ▶; Frémond et al. (2000 ▶); Meyer et al. (1998 ▶). For macrocycle conformations, see: Bosnich et al. (1965 ▶); Dale (1973 ▶, 1976 ▶); Melson (1979 ▶); Bandoli et al. (1993 ▶); Hancock et al. (1996 ▶).

Experimental

Crystal data

C10H26N4 2+·2C4H3O4 − M = 432.48 Monoclinic, a = 8.2925 (1) Å b = 13.5841 (2) Å c = 19.2995 (3) Å β = 98.797 (1)° V = 2148.44 (5) Å3 Z = 4 Cu Kα radiation μ = 0.89 mm−1 T = 100 K 0.25 × 0.20 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.81, T max = 0.84 18854 measured reflections 4018 independent reflections 3821 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.083 S = 1.04 4018 reflections 403 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.36 e Å−3 Δρmin = −0.18 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813025580/hb7135sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025580/hb7135Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H26N42+·2C4H3O4Z = 4
Mr = 432.48F(000) = 928
Monoclinic, P21/nDx = 1.337 Mg m3
a = 8.2925 (1) ÅCu Kα radiation, λ = 1.54178 Å
b = 13.5841 (2) ŵ = 0.89 mm1
c = 19.2995 (3) ÅT = 100 K
β = 98.797 (1)°Prism, colourless
V = 2148.44 (5) Å30.25 × 0.20 × 0.20 mm
Bruker SMART CCD diffractometer3821 reflections with I > 2σ(I)
ω scansRint = 0.024
Absorption correction: multi-scan (SADABS; Bruker, 2005)θmax = 70.1°, θmin = 4.6°
Tmin = 0.81, Tmax = 0.84h = −10→9
18854 measured reflectionsk = −16→16
4018 independent reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0406P)2 + 0.6721P] where P = (Fo2 + 2Fc2)/3
4018 reflections(Δ/σ)max < 0.001
403 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.18 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.29130 (13)0.94686 (8)0.28537 (6)0.0241 (2)
C20.42219 (13)0.89074 (8)0.25661 (6)0.0240 (2)
C30.44193 (13)0.87391 (8)0.19031 (6)0.0229 (2)
C40.34069 (12)0.90322 (8)0.12233 (6)0.0227 (2)
C50.98341 (14)0.76765 (8)0.18188 (6)0.0260 (2)
C61.05748 (14)0.70568 (9)0.24264 (6)0.0259 (2)
C71.02908 (14)0.70577 (9)0.30874 (6)0.0274 (2)
C80.92026 (14)0.76946 (9)0.34489 (6)0.0284 (2)
C90.25226 (15)0.61005 (9)0.03030 (6)0.0301 (3)
C100.47726 (15)0.63339 (9)0.13169 (7)0.0303 (3)
C110.62753 (15)0.58461 (10)0.17098 (6)0.0319 (3)
C120.75542 (14)0.55991 (10)0.12458 (7)0.0309 (3)
C130.81528 (14)0.46284 (9)0.02577 (6)0.0289 (3)
C140.75571 (15)−0.17204 (9)−0.00831 (7)0.0313 (3)
C150.74127 (14)−0.02422 (9)0.06666 (6)0.0283 (2)
C160.84068 (14)0.05815 (9)0.10416 (6)0.0281 (2)
C171.02932 (15)0.19107 (9)0.08931 (6)0.0306 (3)
C181.12976 (16)0.24033 (9)0.03941 (7)0.0335 (3)
N10.38474 (12)0.56356 (7)0.08060 (5)0.0245 (2)
N20.69367 (11)0.48659 (7)0.07078 (5)0.0258 (2)
N30.84805 (11)−0.09675 (7)0.03828 (5)0.0243 (2)
N40.92438 (12)0.11249 (7)0.05474 (5)0.0248 (2)
O10.18816 (10)0.99727 (6)0.24442 (4)0.03003 (19)
H1O0.20610.99060.2030.045*0.39 (5)
O20.29456 (10)0.94215 (6)0.35007 (4)0.0326 (2)
O30.22552 (10)0.96878 (6)0.12282 (4)0.02853 (19)
O40.37276 (9)0.86677 (6)0.06808 (4)0.02820 (19)
O50.85713 (11)0.82014 (7)0.18682 (5)0.0352 (2)
H5O0.84020.82060.22860.053*0.41 (5)
O61.04578 (11)0.76384 (7)0.12791 (4)0.0332 (2)
O70.81387 (10)0.82564 (7)0.30773 (5)0.0340 (2)
O80.93463 (12)0.76651 (8)0.40874 (5)0.0430 (2)
H1A0.3368 (19)0.5175 (12)0.1059 (8)0.036 (4)*
H1B0.4603 (19)0.5331 (11)0.0571 (8)0.034 (4)*
H20.4994 (17)0.8649 (10)0.2919 (7)0.026 (3)*
H2A0.6715 (18)0.4294 (12)0.0937 (8)0.035 (4)*
H30.5346 (17)0.8353 (10)0.1825 (7)0.026 (3)*
H3A0.9173 (18)−0.0670 (11)0.0134 (8)0.032 (4)*
H3B0.9109 (19)−0.1278 (11)0.0739 (8)0.034 (4)*
H3O0.211 (3)0.9802 (17)0.1673 (15)0.023 (8)*0.61 (5)
H40.8494 (19)0.1373 (11)0.0233 (8)0.033 (4)*
H61.1379 (17)0.6605 (11)0.2304 (8)0.031 (3)*
H71.0899 (18)0.6622 (12)0.3405 (8)0.035 (4)*
H7O0.829 (3)0.826 (2)0.2615 (19)0.033 (10)*0.59 (5)
H9A0.3008 (18)0.6660 (12)0.0107 (8)0.036 (4)*
H9B0.1683 (17)0.6323 (11)0.0580 (8)0.031 (3)*
H10A0.5089 (18)0.6906 (11)0.1055 (8)0.033 (4)*
H10B0.4040 (17)0.6548 (11)0.1624 (8)0.031 (3)*
H11A0.6791 (19)0.6312 (12)0.2085 (8)0.039 (4)*
H11B0.5941 (17)0.5260 (11)0.1945 (8)0.031 (3)*
H12A0.7842 (17)0.6192 (11)0.0991 (7)0.030 (3)*
H12B0.855 (2)0.5371 (11)0.1536 (8)0.038 (4)*
H13A0.8453 (17)0.5260 (11)0.0028 (7)0.028 (3)*
H13B0.9123 (19)0.4366 (11)0.0525 (8)0.033 (4)*
H14A0.6835 (18)−0.1343 (11)−0.0437 (8)0.034 (4)*
H14B0.6853 (19)−0.2065 (12)0.0195 (8)0.039 (4)*
H15A0.6656 (17)0.0007 (10)0.0272 (7)0.025 (3)*
H15B0.6817 (18)−0.0594 (11)0.0973 (8)0.034 (4)*
H16A0.9219 (17)0.0315 (10)0.1411 (7)0.028 (3)*
H16B0.7675 (18)0.1014 (11)0.1274 (8)0.033 (4)*
H17A1.1036 (17)0.1611 (10)0.1290 (7)0.028 (3)*
H17B0.9618 (18)0.2419 (12)0.1109 (8)0.036 (4)*
H18A1.0582 (19)0.2722 (11)0.0018 (8)0.036 (4)*
H18B1.1958 (19)0.2909 (12)0.0640 (8)0.039 (4)*
U11U22U33U12U13U23
C10.0230 (5)0.0242 (5)0.0252 (5)−0.0015 (4)0.0038 (4)−0.0028 (4)
C20.0228 (5)0.0247 (5)0.0235 (5)0.0025 (4)0.0007 (4)0.0005 (4)
C30.0196 (5)0.0231 (5)0.0261 (5)0.0023 (4)0.0034 (4)0.0001 (4)
C40.0201 (5)0.0239 (5)0.0243 (5)−0.0021 (4)0.0040 (4)0.0022 (4)
C50.0261 (5)0.0270 (5)0.0238 (5)−0.0043 (4)0.0005 (4)0.0003 (4)
C60.0235 (5)0.0275 (6)0.0261 (6)0.0040 (4)0.0025 (4)−0.0013 (4)
C70.0267 (6)0.0300 (6)0.0245 (5)0.0073 (5)0.0006 (4)0.0031 (5)
C80.0265 (6)0.0319 (6)0.0270 (6)0.0035 (5)0.0046 (4)−0.0003 (5)
C90.0322 (6)0.0314 (6)0.0286 (6)0.0088 (5)0.0108 (5)0.0045 (5)
C100.0332 (6)0.0265 (6)0.0337 (6)−0.0034 (5)0.0133 (5)−0.0063 (5)
C110.0350 (6)0.0339 (6)0.0273 (6)−0.0077 (5)0.0066 (5)−0.0046 (5)
C120.0243 (6)0.0366 (6)0.0312 (6)−0.0054 (5)0.0029 (5)−0.0024 (5)
C130.0234 (5)0.0362 (6)0.0283 (6)0.0052 (5)0.0072 (5)0.0056 (5)
C140.0302 (6)0.0323 (6)0.0291 (6)−0.0103 (5)−0.0024 (5)0.0020 (5)
C150.0209 (5)0.0360 (6)0.0283 (6)0.0020 (5)0.0051 (4)0.0075 (5)
C160.0259 (6)0.0359 (6)0.0230 (5)0.0077 (5)0.0056 (4)−0.0002 (5)
C170.0331 (6)0.0273 (6)0.0290 (6)0.0034 (5)−0.0030 (5)−0.0068 (5)
C180.0398 (7)0.0236 (6)0.0328 (6)−0.0046 (5)−0.0083 (5)−0.0007 (5)
N10.0243 (5)0.0245 (5)0.0265 (5)0.0006 (4)0.0098 (4)−0.0007 (4)
N20.0234 (5)0.0284 (5)0.0268 (5)−0.0021 (4)0.0082 (4)0.0003 (4)
N30.0224 (5)0.0269 (5)0.0229 (5)−0.0033 (4)0.0007 (4)0.0039 (4)
N40.0246 (5)0.0258 (5)0.0227 (5)0.0031 (4)−0.0009 (4)−0.0007 (4)
O10.0262 (4)0.0355 (4)0.0282 (4)0.0088 (3)0.0038 (3)−0.0013 (4)
O20.0365 (5)0.0374 (5)0.0247 (4)0.0074 (4)0.0076 (3)−0.0025 (3)
O30.0278 (4)0.0313 (4)0.0257 (4)0.0082 (3)0.0017 (3)0.0031 (3)
O40.0275 (4)0.0357 (4)0.0216 (4)0.0025 (3)0.0045 (3)0.0008 (3)
O50.0337 (5)0.0425 (5)0.0286 (5)0.0118 (4)0.0026 (3)0.0092 (4)
O60.0375 (5)0.0395 (5)0.0232 (4)−0.0024 (4)0.0064 (3)0.0016 (3)
O70.0311 (4)0.0404 (5)0.0306 (5)0.0142 (4)0.0053 (3)0.0018 (4)
O80.0473 (5)0.0572 (6)0.0254 (4)0.0175 (5)0.0083 (4)−0.0004 (4)
C1—O21.2463 (14)C13—N21.4641 (14)
C1—O11.2722 (14)C13—C9i1.5099 (18)
C1—C21.5007 (15)C13—H13A1.014 (15)
C2—C31.3343 (16)C13—H13B0.956 (16)
C2—H20.930 (14)C14—N31.4933 (15)
C3—C41.4991 (15)C14—C18ii1.5156 (19)
C3—H30.961 (14)C14—H14A0.981 (16)
C4—O41.2236 (14)C14—H14B0.972 (16)
C4—O31.3070 (14)C15—N31.4843 (15)
C5—O61.2328 (14)C15—C161.5076 (17)
C5—O51.2824 (15)C15—H15A0.971 (14)
C5—C61.4969 (16)C15—H15B0.954 (16)
C6—C71.3321 (17)C16—N41.4625 (15)
C6—H60.962 (15)C16—H16A0.973 (14)
C7—C81.4975 (16)C16—H16B0.998 (15)
C7—H70.941 (16)C17—N41.4712 (15)
C8—O81.2204 (15)C17—C181.5213 (19)
C8—O71.2967 (15)C17—H17A0.994 (14)
C9—N11.4906 (15)C17—H17B1.017 (16)
C9—C13i1.5099 (18)C18—C14ii1.5155 (19)
C9—H9A0.963 (16)C18—H18A0.967 (16)
C9—H9B0.988 (15)C18—H18B0.958 (17)
C10—N11.4929 (15)N1—H1A0.920 (17)
C10—C111.5093 (18)N1—H1B0.925 (16)
C10—H10A0.984 (16)N2—H2A0.926 (16)
C10—H10B0.956 (15)N3—H3A0.899 (16)
C11—C121.5262 (17)N3—H3B0.901 (16)
C11—H11A1.007 (16)N4—H40.868 (16)
C11—H11B0.978 (15)O1—H1O0.84
C12—N21.4729 (16)O3—H3O0.90 (3)
C12—H12A0.992 (15)O5—H5O0.84
C12—H12B0.977 (16)O7—H7O0.92 (4)
O2—C1—O1124.03 (10)H13A—C13—H13B108.0 (12)
O2—C1—C2116.00 (10)N3—C14—C18ii111.28 (10)
O1—C1—C2119.95 (10)N3—C14—H14A105.3 (9)
C3—C2—C1130.06 (10)C18ii—C14—H14A113.4 (9)
C3—C2—H2117.8 (8)N3—C14—H14B107.1 (9)
C1—C2—H2112.1 (8)C18ii—C14—H14B112.9 (9)
C2—C3—C4131.25 (10)H14A—C14—H14B106.4 (12)
C2—C3—H3117.6 (8)N3—C15—C16110.89 (9)
C4—C3—H3111.2 (8)N3—C15—H15A107.0 (8)
O4—C4—O3122.45 (10)C16—C15—H15A111.0 (8)
O4—C4—C3118.39 (10)N3—C15—H15B106.9 (9)
O3—C4—C3119.12 (9)C16—C15—H15B111.8 (9)
O6—C5—O5122.62 (11)H15A—C15—H15B109.1 (12)
O6—C5—C6117.60 (10)N4—C16—C15109.92 (9)
O5—C5—C6119.75 (10)N4—C16—H16A108.8 (8)
C7—C6—C5129.66 (11)C15—C16—H16A110.0 (8)
C7—C6—H6117.9 (9)N4—C16—H16B112.1 (8)
C5—C6—H6112.5 (9)C15—C16—H16B109.1 (8)
C6—C7—C8130.85 (11)H16A—C16—H16B106.9 (12)
C6—C7—H7117.9 (9)N4—C17—C18112.03 (10)
C8—C7—H7111.1 (9)N4—C17—H17A107.8 (8)
O8—C8—O7122.06 (11)C18—C17—H17A109.5 (8)
O8—C8—C7118.61 (11)N4—C17—H17B110.8 (8)
O7—C8—C7119.33 (10)C18—C17—H17B110.4 (9)
N1—C9—C13i110.16 (9)H17A—C17—H17B106.1 (12)
N1—C9—H9A106.2 (9)C14ii—C18—C17114.74 (10)
C13i—C9—H9A111.6 (9)C14ii—C18—H18A109.1 (9)
N1—C9—H9B106.7 (8)C17—C18—H18A109.9 (9)
C13i—C9—H9B111.9 (8)C14ii—C18—H18B106.9 (9)
H9A—C9—H9B110.0 (12)C17—C18—H18B109.1 (9)
N1—C10—C11110.75 (10)H18A—C18—H18B106.8 (13)
N1—C10—H10A108.3 (9)C9—N1—C10114.46 (9)
C11—C10—H10A109.9 (9)C9—N1—H1A107.3 (10)
N1—C10—H10B106.9 (9)C10—N1—H1A107.6 (10)
C11—C10—H10B112.1 (9)C9—N1—H1B110.9 (9)
H10A—C10—H10B108.7 (12)C10—N1—H1B106.8 (9)
C10—C11—C12113.34 (10)H1A—N1—H1B109.6 (13)
C10—C11—H11A108.2 (9)C13—N2—C12111.75 (9)
C12—C11—H11A107.7 (9)C13—N2—H2A107.7 (9)
C10—C11—H11B108.7 (8)C12—N2—H2A107.7 (9)
C12—C11—H11B111.5 (8)C15—N3—C14113.39 (9)
H11A—C11—H11B107.3 (12)C15—N3—H3A111.3 (9)
N2—C12—C11111.37 (10)C14—N3—H3A107.3 (9)
N2—C12—H12A106.5 (8)C15—N3—H3B109.7 (10)
C11—C12—H12A110.7 (8)C14—N3—H3B108.8 (10)
N2—C12—H12B111.2 (9)H3A—N3—H3B106.0 (13)
C11—C12—H12B109.8 (9)C16—N4—C17112.16 (9)
H12A—C12—H12B107.1 (12)C16—N4—H4106.9 (10)
N2—C13—C9i110.86 (10)C17—N4—H4110.3 (10)
N2—C13—H13A108.1 (8)C1—O1—H1O109.5
C9i—C13—H13A109.3 (8)C4—O3—H3O109.3 (14)
N2—C13—H13B111.2 (9)C5—O5—H5O109.5
C9i—C13—H13B109.4 (9)C8—O7—H7O111.2 (16)
O2—C1—C2—C3172.92 (12)C10—C11—C12—N2−64.14 (14)
O1—C1—C2—C3−8.76 (18)N3—C15—C16—N463.16 (12)
C1—C2—C3—C4−1.1 (2)N4—C17—C18—C14ii−60.25 (13)
C2—C3—C4—O4−169.79 (12)C13i—C9—N1—C10171.04 (9)
C2—C3—C4—O312.43 (18)C11—C10—N1—C9−169.21 (10)
O6—C5—C6—C7169.97 (12)C9i—C13—N2—C12−178.28 (10)
O5—C5—C6—C7−11.73 (19)C11—C12—N2—C13179.69 (10)
C5—C6—C7—C8−2.7 (2)C16—C15—N3—C14−171.53 (10)
C6—C7—C8—O8−167.94 (13)C18ii—C14—N3—C15176.49 (10)
C6—C7—C8—O712.2 (2)C15—C16—N4—C17−177.39 (9)
N1—C10—C11—C1267.08 (13)C18—C17—N4—C16173.98 (10)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O2iii0.920 (17)1.800 (17)2.7074 (13)168.1 (14)
N1—H1B···N20.925 (16)2.015 (15)2.8000 (13)141.7 (13)
N2—H2A···O7iv0.926 (16)2.356 (16)3.2134 (13)153.9 (13)
N2—H2A···O8iv0.926 (16)2.379 (16)3.2178 (14)150.6 (13)
N3—H3A···N4ii0.899 (16)2.089 (16)2.8046 (14)135.8 (13)
N3—H3B···O5v0.901 (16)2.397 (16)3.0713 (13)131.7 (12)
N3—H3B···O6v0.901 (16)2.037 (16)2.8982 (13)159.5 (14)
N4—H4···O4i0.868 (16)2.348 (16)3.1596 (12)155.8 (13)
O3—H3O···O10.90 (3)1.55 (3)2.4444 (12)178 (2)
O7—H7O···O50.92 (4)1.50 (4)2.4157 (13)176 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯O2i 0.920 (17)1.800 (17)2.7074 (13)168.1 (14)
N1—H1B⋯N20.925 (16)2.015 (15)2.8000 (13)141.7 (13)
N2—H2A⋯O7ii 0.926 (16)2.356 (16)3.2134 (13)153.9 (13)
N2—H2A⋯O8ii 0.926 (16)2.379 (16)3.2178 (14)150.6 (13)
N3—H3A⋯N4iii 0.899 (16)2.089 (16)2.8046 (14)135.8 (13)
N3—H3B⋯O5iv 0.901 (16)2.397 (16)3.0713 (13)131.7 (12)
N3—H3B⋯O6iv 0.901 (16)2.037 (16)2.8982 (13)159.5 (14)
N4—H4⋯O4v 0.868 (16)2.348 (16)3.1596 (12)155.8 (13)
O3—H3O⋯O10.90 (3)1.55 (3)2.4444 (12)178 (2)
O7—H7O⋯O50.92 (4)1.50 (4)2.4157 (13)176 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  Crystal structure of 1,4,8,11-tetra-azonia-cyclo-tetra-decane bis-(dichromate) monohydrate from synchrotron data.

Authors:  Dohyun Moon; Jong-Ha Choi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-04-28
  1 in total

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