Literature DB >> 24098241

2,6-Dimethyl-N-(2-methyl-phen-yl)-1,3-dioxan-4-amine.

Zeenat Fatima1, Gottimukkala Rambabu, Bandapalli Palakshi Reddy, Vijayaparthasarathi Vijayakumar, Devadasan Velmurugan.   

Abstract

In the title compound, C13H19NO2, the dioxane ring adopts a chair conformation and its mean plane makes a dihedral angle of 45.36 (8)° with the phenyl ring. In the crystal, mol-ecules are linked by pairs of N-H⋯O hydrogen bonds, forming inversion dimers with R (2) 2(12) ring motifs. These dimers are consolidated by pairs of C-H⋯O hydrogen bonds with R (2) 2(8) ring motifs.

Entities:  

Year:  2013        PMID: 24098241      PMCID: PMC3790422          DOI: 10.1107/S1600536813025294

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of 1,3-dioxane derivatives, see: Wang et al. (1996a ▶,b ▶); Yuan et al. (2005 ▶). Dioxane rings are frequently encountered in many bioactive mol­ecules, some of which are cytotoxic agents (Aubele et al., 2005 ▶) and anti­muscarinic agents (Marucci et al., 2005 ▶). For related crystal structures, see: Chuprunov et al. (1981 ▶); Thevenet et al. (2010 ▶); Fatima et al. (2013 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H19NO2 M = 221.29 Monoclinic, a = 8.0209 (2) Å b = 7.8762 (2) Å c = 20.4293 (5) Å β = 99.066 (2)° V = 1274.48 (6) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.692, T max = 0.746 12359 measured reflections 3177 independent reflections 2481 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.119 S = 1.03 3177 reflections 152 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.12 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813025294/su2643sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025294/su2643Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813025294/su2643Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H19NO2F(000) = 480
Mr = 221.29Dx = 1.153 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3177 reflections
a = 8.0209 (2) Åθ = 2.0–28.4°
b = 7.8762 (2) ŵ = 0.08 mm1
c = 20.4293 (5) ÅT = 293 K
β = 99.066 (2)°Block, colourless
V = 1274.48 (6) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer3177 independent reflections
Radiation source: fine-focus sealed tube2481 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.019
ω and φ scansθmax = 28.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→10
Tmin = 0.692, Tmax = 0.746k = −10→10
12359 measured reflectionsl = −26→27
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.119w = 1/[σ2(Fo2) + (0.0553P)2 + 0.1687P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3177 reflectionsΔρmax = 0.18 e Å3
152 parametersΔρmin = −0.12 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.077 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
H10.3087 (18)0.4830 (19)0.5783 (7)0.067 (4)*
C10.31391 (18)0.68745 (18)0.35171 (7)0.0682 (4)
H1A0.32170.66100.30640.102*
H1B0.42120.72780.37370.102*
H1C0.23000.77380.35310.102*
C20.26506 (14)0.53043 (15)0.38614 (6)0.0509 (3)
H20.15700.48840.36270.061*
C30.24940 (13)0.56014 (14)0.45810 (5)0.0474 (3)
H3A0.35110.61470.48040.057*
H3B0.15500.63540.46070.057*
C40.22287 (12)0.39494 (14)0.49256 (5)0.0457 (3)
H40.11210.34890.47390.055*
C50.35637 (15)0.25112 (14)0.41290 (6)0.0511 (3)
H50.24770.20660.39100.061*
C60.4939 (2)0.12583 (18)0.40646 (8)0.0727 (4)
H6A0.49920.10720.36040.109*
H6B0.47030.02040.42670.109*
H6C0.60000.16970.42810.109*
C70.19069 (13)0.28783 (15)0.60341 (5)0.0475 (3)
C80.13383 (15)0.12993 (17)0.57909 (7)0.0570 (3)
H80.12400.10790.53390.068*
C90.09169 (17)0.00538 (19)0.62110 (8)0.0684 (4)
H90.0524−0.09910.60400.082*
C100.10746 (19)0.0348 (2)0.68794 (8)0.0773 (4)
H100.0799−0.04940.71630.093*
C110.16463 (19)0.1905 (2)0.71237 (7)0.0739 (4)
H110.17600.20960.75780.089*
C120.20590 (14)0.31981 (18)0.67183 (6)0.0573 (3)
C130.2628 (2)0.4902 (2)0.69976 (7)0.0778 (4)
H13A0.25370.49350.74600.117*
H13B0.19290.57720.67680.117*
H13C0.37810.50880.69430.117*
N10.22865 (13)0.41904 (13)0.56182 (5)0.0508 (2)
O10.35151 (9)0.27540 (10)0.48107 (4)0.0477 (2)
O20.39299 (10)0.40450 (10)0.38245 (4)0.0509 (2)
U11U22U33U12U13U23
C10.0724 (8)0.0649 (8)0.0671 (8)0.0025 (7)0.0106 (6)0.0160 (6)
C20.0435 (5)0.0577 (7)0.0495 (6)−0.0018 (5)0.0009 (4)0.0032 (5)
C30.0407 (5)0.0495 (6)0.0513 (6)0.0054 (4)0.0047 (4)−0.0003 (5)
C40.0375 (5)0.0529 (6)0.0461 (6)−0.0011 (4)0.0045 (4)−0.0026 (4)
C50.0567 (6)0.0469 (6)0.0500 (6)−0.0108 (5)0.0095 (5)−0.0089 (5)
C60.0930 (10)0.0516 (7)0.0778 (9)0.0049 (7)0.0270 (8)−0.0136 (6)
C70.0377 (5)0.0567 (7)0.0486 (6)0.0031 (4)0.0085 (4)0.0021 (5)
C80.0502 (6)0.0623 (7)0.0587 (7)−0.0030 (5)0.0096 (5)0.0005 (6)
C90.0576 (7)0.0630 (8)0.0861 (10)−0.0058 (6)0.0158 (6)0.0088 (7)
C100.0706 (9)0.0835 (11)0.0808 (10)−0.0003 (8)0.0211 (7)0.0279 (8)
C110.0714 (8)0.0987 (12)0.0537 (7)0.0022 (8)0.0161 (6)0.0137 (7)
C120.0497 (6)0.0738 (8)0.0497 (6)0.0029 (6)0.0122 (5)−0.0002 (6)
C130.0895 (10)0.0930 (11)0.0544 (8)−0.0102 (9)0.0217 (7)−0.0172 (7)
N10.0514 (5)0.0556 (6)0.0455 (5)−0.0050 (4)0.0079 (4)−0.0035 (4)
O10.0496 (4)0.0458 (4)0.0475 (4)0.0004 (3)0.0073 (3)−0.0025 (3)
O20.0523 (4)0.0504 (5)0.0517 (4)−0.0042 (3)0.0136 (3)−0.0022 (3)
C1—C21.5048 (17)C6—H6B0.9600
C1—H1A0.9600C6—H6C0.9600
C1—H1B0.9600C7—C81.3893 (17)
C1—H1C0.9600C7—N11.4014 (15)
C2—O21.4376 (14)C7—C121.4065 (16)
C2—C31.5133 (16)C8—C91.3800 (18)
C2—H20.9800C8—H80.9300
C3—C41.5103 (16)C9—C101.371 (2)
C3—H3A0.9700C9—H90.9300
C3—H3B0.9700C10—C111.375 (2)
C4—N11.4212 (14)C10—H100.9300
C4—O11.4431 (13)C11—C121.386 (2)
C4—H40.9800C11—H110.9300
C5—O21.4108 (14)C12—C131.501 (2)
C5—O11.4122 (13)C13—H13A0.9600
C5—C61.5010 (18)C13—H13B0.9600
C5—H50.9800C13—H13C0.9600
C6—H6A0.9600N1—H10.843 (15)
C2—C1—H1A109.5C5—C6—H6C109.5
C2—C1—H1B109.5H6A—C6—H6C109.5
H1A—C1—H1B109.5H6B—C6—H6C109.5
C2—C1—H1C109.5C8—C7—N1122.26 (10)
H1A—C1—H1C109.5C8—C7—C12119.20 (11)
H1B—C1—H1C109.5N1—C7—C12118.51 (11)
O2—C2—C1107.58 (9)C9—C8—C7120.85 (12)
O2—C2—C3109.08 (8)C9—C8—H8119.6
C1—C2—C3113.24 (10)C7—C8—H8119.6
O2—C2—H2109.0C10—C9—C8120.41 (14)
C1—C2—H2109.0C10—C9—H9119.8
C3—C2—H2109.0C8—C9—H9119.8
C4—C3—C2111.04 (9)C9—C10—C11119.03 (14)
C4—C3—H3A109.4C9—C10—H10120.5
C2—C3—H3A109.4C11—C10—H10120.5
C4—C3—H3B109.4C10—C11—C12122.41 (14)
C2—C3—H3B109.4C10—C11—H11118.8
H3A—C3—H3B108.0C12—C11—H11118.8
N1—C4—O1109.70 (8)C11—C12—C7118.09 (13)
N1—C4—C3111.35 (9)C11—C12—C13121.14 (12)
O1—C4—C3109.23 (8)C7—C12—C13120.76 (12)
N1—C4—H4108.8C12—C13—H13A109.5
O1—C4—H4108.8C12—C13—H13B109.5
C3—C4—H4108.8H13A—C13—H13B109.5
O2—C5—O1111.04 (9)C12—C13—H13C109.5
O2—C5—C6108.50 (10)H13A—C13—H13C109.5
O1—C5—C6108.08 (10)H13B—C13—H13C109.5
O2—C5—H5109.7C7—N1—C4121.93 (10)
O1—C5—H5109.7C7—N1—H1115.0 (10)
C6—C5—H5109.7C4—N1—H1112.4 (10)
C5—C6—H6A109.5C5—O1—C4112.35 (8)
C5—C6—H6B109.5C5—O2—C2111.57 (8)
H6A—C6—H6B109.5
O2—C2—C3—C4−52.82 (11)N1—C7—C12—C13−0.45 (17)
C1—C2—C3—C4−172.57 (9)C8—C7—N1—C4−4.57 (16)
C2—C3—C4—N1172.86 (8)C12—C7—N1—C4177.47 (10)
C2—C3—C4—O151.55 (11)O1—C4—N1—C7−65.48 (12)
N1—C7—C8—C9−177.63 (11)C3—C4—N1—C7173.48 (9)
C12—C7—C8—C90.31 (17)O2—C5—O1—C460.92 (11)
C7—C8—C9—C10−0.9 (2)C6—C5—O1—C4179.82 (9)
C8—C9—C10—C110.5 (2)N1—C4—O1—C5−177.70 (9)
C9—C10—C11—C120.5 (2)C3—C4—O1—C5−55.39 (11)
C10—C11—C12—C7−1.0 (2)O1—C5—O2—C2−61.96 (11)
C10—C11—C12—C13178.05 (14)C6—C5—O2—C2179.40 (9)
C8—C7—C12—C110.63 (17)C1—C2—O2—C5−179.23 (9)
N1—C7—C12—C11178.65 (11)C3—C2—O2—C557.58 (11)
C8—C7—C12—C13−178.47 (12)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.843 (15)2.559 (15)3.3688 (13)161.3 (13)
C3—H3A···O1i0.972.543.4950 (13)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O2i 0.843 (15)2.559 (15)3.3688 (13)161.3 (13)
C3—H3A⋯O1i 0.972.543.4950 (13)167

Symmetry code: (i) .

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