Literature DB >> 24098232

2-(2-Methyl-benzo-yl)benzoic acid: catemeric hydrogen bonding in a γ-keto acid.

Natalia A Platosz1, Roger A Lalancette, Hugh W Thompson, Jacob M Newman, Ari Schachter.   

Abstract

The crystal structure of the title compound, C15H12O3, displays catemeric aggregation involving O-H⋯O hydrogen bonds progressing from the carboxyl group of one mol-ecule to the ketone O atom of another glide-related neighbor. The mol-ecule is twisted, with the toluene 80.61 (3)° out of plane with respect to the phenyl group of the benzoic acid. The acid group makes a dihedral angle of 13.79 (14)° with the attached phenyl ring. The mol-ecules are achiral, but the space group glide planes create alternating conformational chirality in the chain units. The four hydrogen-bonding chains progress along [001] in an A-A-B-B pattern (right-to-left versus left-to-right), and are related to each other by the center of symmetry at (0.5, 0.5, 0.5) in the chosen cell. There is one close contact (2.54 Å) between a phenyl H atom and the acid carbonyl from a symmetry-related mol-ecule.

Entities:  

Year:  2013        PMID: 24098232      PMCID: PMC3790413          DOI: 10.1107/S1600536813025099

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a discussion of highly ordered carboxyl bond distances and angles, see: Borthwick (1980 ▶). For close contact information, see: Steiner (1997 ▶). For related structures, see: Abell et al. (1991 ▶); Barcon et al. (1998 ▶, 2002 ▶); Degen & Bolte (1999 ▶); Hickmott et al. (1985 ▶); Kashyap et al. (1995 ▶); Song et al. (2008 ▶); Thompson et al. (1998 ▶); Watson et al. (1990 ▶). For preparation of the title compound, see: Newman & McCleary (1941 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C15H12O3 M = 240.25 Orthorhombic, a = 10.7450 (2) Å b = 10.1737 (2) Å c = 21.6588 (4) Å V = 2367.66 (8) Å3 Z = 8 Cu Kα radiation μ = 0.77 mm−1 T = 100 K 0.45 × 0.26 × 0.20 mm

Data collection

Bruker SMART CCD APEXII area-detector diffractometer Absorption correction: numerical (SADABS; Sheldrick, 2008a ▶) T min = 0.724, T max = 0.862 20799 measured reflections 2143 independent reflections 2075 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.076 S = 1.07 2143 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813025099/bg2513sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813025099/bg2513Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813025099/bg2513Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12O3F(000) = 1008
Mr = 240.25Dx = 1.348 Mg m3
Orthorhombic, PbcaCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2ac 2abCell parameters from 9881 reflections
a = 10.7450 (2) Åθ = 4.1–69.4°
b = 10.1737 (2) ŵ = 0.77 mm1
c = 21.6588 (4) ÅT = 100 K
V = 2367.66 (8) Å3Block, colourless
Z = 80.45 × 0.26 × 0.20 mm
Bruker SMART CCD APEXII area-detector diffractometer2143 independent reflections
Radiation source: fine-focus sealed tube2075 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
φ and ω scansθmax = 69.7°, θmin = 4.1°
Absorption correction: numerical (SADABS; Sheldrick, 2008a)h = −12→12
Tmin = 0.724, Tmax = 0.862k = −12→11
20799 measured reflectionsl = −26→25
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.030H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0323P)2 + 0.9262P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
2143 reflectionsΔρmax = 0.24 e Å3
169 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00145 (14)
Experimental. 'crystal mounted on a Cryoloop using Paratone-N'
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.94221 (8)0.35848 (8)0.62029 (4)0.0310 (2)
O20.77379 (7)0.10436 (8)0.62358 (3)0.0265 (2)
O30.71268 (8)−0.03026 (8)0.69973 (4)0.0296 (2)
H3A0.6595 (17)−0.0633 (17)0.6695 (8)0.059 (5)*
C10.86743 (10)0.12547 (10)0.72243 (5)0.0192 (2)
C20.96175 (10)0.20965 (10)0.70233 (5)0.0194 (2)
C31.04111 (10)0.26693 (11)0.74557 (5)0.0247 (3)
H31.10600.32360.73220.030*
C41.02588 (11)0.24164 (12)0.80801 (5)0.0285 (3)
H41.08000.28150.83720.034*
C50.93210 (11)0.15848 (12)0.82799 (5)0.0282 (3)
H50.92180.14130.87080.034*
C60.85359 (11)0.10055 (11)0.78538 (5)0.0239 (3)
H60.78960.04320.79910.029*
C70.78069 (10)0.06640 (10)0.67642 (5)0.0205 (2)
C80.97910 (10)0.24909 (10)0.63557 (5)0.0209 (2)
C91.04899 (9)0.16186 (10)0.59332 (5)0.0197 (2)
C101.07236 (10)0.19649 (11)0.53104 (5)0.0220 (2)
C111.14050 (10)0.10824 (12)0.49536 (5)0.0272 (3)
H111.15850.13030.45370.033*
C121.18287 (11)−0.01046 (12)0.51844 (5)0.0282 (3)
H121.2278−0.06890.49250.034*
C131.15975 (11)−0.04392 (11)0.57930 (5)0.0257 (3)
H131.1892−0.12490.59550.031*
C141.09334 (10)0.04195 (10)0.61622 (5)0.0217 (2)
H141.07750.01910.65800.026*
C151.02565 (11)0.32089 (12)0.50152 (5)0.0286 (3)
H15A1.05730.32670.45920.043*
H15B1.05480.39680.52530.043*
H15C0.93450.32010.50090.043*
U11U22U33U12U13U23
O10.0390 (5)0.0237 (4)0.0303 (4)0.0084 (4)0.0099 (4)0.0048 (3)
O20.0248 (4)0.0380 (5)0.0166 (4)−0.0045 (3)0.0004 (3)−0.0019 (3)
O30.0312 (5)0.0272 (4)0.0303 (4)−0.0101 (3)−0.0078 (4)0.0056 (3)
C10.0196 (5)0.0190 (5)0.0191 (5)0.0039 (4)0.0003 (4)−0.0028 (4)
C20.0198 (5)0.0174 (5)0.0210 (5)0.0046 (4)0.0006 (4)−0.0035 (4)
C30.0224 (5)0.0204 (5)0.0312 (6)0.0011 (4)−0.0030 (5)−0.0047 (5)
C40.0319 (6)0.0269 (6)0.0268 (6)0.0063 (5)−0.0105 (5)−0.0098 (5)
C50.0365 (7)0.0308 (6)0.0172 (5)0.0085 (5)−0.0024 (5)−0.0038 (5)
C60.0260 (6)0.0251 (6)0.0206 (5)0.0037 (5)0.0029 (4)−0.0004 (4)
C70.0195 (5)0.0208 (5)0.0211 (5)0.0020 (4)0.0023 (4)−0.0030 (4)
C80.0177 (5)0.0207 (5)0.0243 (6)−0.0020 (4)0.0003 (4)0.0001 (4)
C90.0154 (5)0.0227 (5)0.0210 (5)−0.0029 (4)−0.0008 (4)−0.0026 (4)
C100.0164 (5)0.0292 (6)0.0204 (5)−0.0038 (4)−0.0026 (4)−0.0013 (4)
C110.0223 (6)0.0423 (7)0.0169 (5)−0.0007 (5)−0.0008 (4)−0.0042 (5)
C120.0209 (6)0.0385 (6)0.0254 (6)0.0049 (5)−0.0011 (5)−0.0120 (5)
C130.0229 (6)0.0260 (6)0.0281 (6)0.0042 (4)−0.0031 (5)−0.0050 (5)
C140.0204 (5)0.0242 (5)0.0205 (5)−0.0012 (4)−0.0007 (4)−0.0021 (4)
C150.0271 (6)0.0366 (6)0.0222 (5)0.0002 (5)−0.0001 (5)0.0053 (5)
O1—C81.2269 (13)C8—C91.4796 (15)
O2—C71.2102 (13)C9—C141.4004 (15)
O3—C71.3251 (13)C9—C101.4165 (15)
O3—H3A0.932 (18)C10—C111.3926 (16)
C1—C61.3948 (15)C10—C151.5041 (16)
C1—C21.3965 (15)C11—C121.3840 (18)
C1—C71.4909 (15)C11—H110.9500
C2—C31.3942 (15)C12—C131.3838 (17)
C2—C81.5120 (15)C12—H120.9500
C3—C41.3863 (17)C13—C141.3828 (15)
C3—H30.9500C13—H130.9500
C4—C51.3851 (18)C14—H140.9500
C4—H40.9500C15—H15A0.9800
C5—C61.3823 (16)C15—H15B0.9800
C5—H50.9500C15—H15C0.9800
C6—H60.9500
H12···O2i2.54
C7—O3—H3A109.8 (11)C14—C9—C10119.58 (10)
C6—C1—C2119.57 (10)C14—C9—C8118.43 (9)
C6—C1—C7120.89 (10)C10—C9—C8121.99 (10)
C2—C1—C7119.51 (9)C11—C10—C9117.47 (10)
C3—C2—C1119.40 (10)C11—C10—C15118.82 (10)
C3—C2—C8117.13 (10)C9—C10—C15123.70 (10)
C1—C2—C8123.38 (9)C12—C11—C10122.35 (10)
C4—C3—C2120.37 (11)C12—C11—H11118.8
C4—C3—H3119.8C10—C11—H11118.8
C2—C3—H3119.8C13—C12—C11119.98 (11)
C5—C4—C3120.26 (11)C13—C12—H12120.0
C5—C4—H4119.9C11—C12—H12120.0
C3—C4—H4119.9C14—C13—C12119.21 (11)
C6—C5—C4119.73 (11)C14—C13—H13120.4
C6—C5—H5120.1C12—C13—H13120.4
C4—C5—H5120.1C13—C14—C9121.41 (10)
C5—C6—C1120.66 (11)C13—C14—H14119.3
C5—C6—H6119.7C9—C14—H14119.3
C1—C6—H6119.7C10—C15—H15A109.5
O2—C7—O3124.28 (10)C10—C15—H15B109.5
O2—C7—C1122.80 (10)H15A—C15—H15B109.5
O3—C7—C1112.91 (9)C10—C15—H15C109.5
O1—C8—C9122.77 (10)H15A—C15—H15C109.5
O1—C8—C2117.31 (9)H15B—C15—H15C109.5
C9—C8—C2119.67 (9)
C6—C1—C2—C30.35 (15)C3—C2—C8—C999.68 (11)
C7—C1—C2—C3178.67 (9)C1—C2—C8—C9−83.75 (13)
C6—C1—C2—C8−176.14 (10)O1—C8—C9—C14176.35 (10)
C7—C1—C2—C82.17 (15)C2—C8—C9—C142.36 (14)
C1—C2—C3—C4−0.62 (16)O1—C8—C9—C10−3.38 (16)
C8—C2—C3—C4176.09 (10)C2—C8—C9—C10−177.37 (9)
C2—C3—C4—C50.43 (17)C14—C9—C10—C11−0.57 (15)
C3—C4—C5—C60.04 (17)C8—C9—C10—C11179.15 (10)
C4—C5—C6—C1−0.31 (17)C14—C9—C10—C15178.13 (10)
C2—C1—C6—C50.11 (16)C8—C9—C10—C15−2.14 (16)
C7—C1—C6—C5−178.18 (10)C9—C10—C11—C121.15 (16)
C6—C1—C7—O2165.34 (10)C15—C10—C11—C12−177.62 (11)
C2—C1—C7—O2−12.94 (15)C10—C11—C12—C13−1.14 (18)
C6—C1—C7—O3−14.30 (14)C11—C12—C13—C140.51 (17)
C2—C1—C7—O3167.41 (9)C12—C13—C14—C90.05 (17)
C3—C2—C8—O1−74.63 (13)C10—C9—C14—C130.00 (16)
C1—C2—C8—O1101.94 (12)C8—C9—C14—C13−179.74 (10)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O1ii0.932 (18)1.714 (18)2.6477 (11)172.3 (16)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯O1ii 0.932 (18)1.714 (18)2.6477 (11)172.3 (16)

Symmetry code: (ii) .

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