Literature DB >> 24098227

3-(3-Methyl-phen-yl)-5-(quinolin-8-yl-meth-oxy)-1,2,4-oxa-diazole monohydrate.

Lu Yang1, Wei Liu, Han Wang, Xing-Wei Chen, Hai-Bo Wang.   

Abstract

In the title compound, C19H15N3O2·H2O, the oxa-diazole ring and the quinoline unit are almost coplanar, making a dihedral angle of 7.66 (8)°. The dihedral angle between the benzene ring and the quinoline system is 25.95 (8)° while that between the benzene and the oxa-diazole rings is 18.88 (9)°. The water mol-ecule is hydrogen bonded to an oxa-diazole N atom and to the quinoline N atom. In the crystal, these units are linked via C-H⋯O hydrogen bonds, forming two-dimensional net-works lying parallel to the ab plane.

Entities:  

Year:  2013        PMID: 24098227      PMCID: PMC3790408          DOI: 10.1107/S160053681302477X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of the title compound, see: Chiou & Shine (1989 ▶). For the biological activity of 1,2,4-oxa­diazole derivatives, see: Street et al. (1990 ▶). For metal complexes of related compounds, see: da Silva et al. (1999 ▶); Pibiri et al. (2010 ▶); Terenzi et al. (2011 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H15N3O2·H2O M = 335.36 Triclinic, a = 7.2070 (14) Å b = 7.6200 (15) Å c = 15.109 (3) Å α = 92.62 (3)° β = 90.19 (3)° γ = 92.15 (3)° V = 828.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.973, T max = 0.991 3302 measured reflections 3039 independent reflections 1949 reflections with I > 2σ(I) R int = 0.015 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.162 S = 1.00 3039 reflections 233 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.18 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) D, I. DOI: 10.1107/S160053681302477X/im2428sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302477X/im2428Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H15N3O2·H2OZ = 2
Mr = 335.36F(000) = 352
Triclinic, P1Dx = 1.345 Mg m3
Hall symbol: -P 1Melting point: 342 K
a = 7.2070 (14) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.6200 (15) ÅCell parameters from 25 reflections
c = 15.109 (3) Åθ = 9–13°
α = 92.62 (3)°µ = 0.09 mm1
β = 90.19 (3)°T = 293 K
γ = 92.15 (3)°Block, yellow
V = 828.3 (3) Å30.30 × 0.10 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1949 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.015
Graphite monochromatorθmax = 25.4°, θmin = 1.4°
ω/2θ scansh = 0→8
Absorption correction: ψ scan (North et al., 1968)k = −9→9
Tmin = 0.973, Tmax = 0.991l = −18→18
3302 measured reflections3 standard reflections every 200 reflections
3039 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.054H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.162w = 1/[σ2(Fo2) + (0.097P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
3039 reflectionsΔρmax = 0.24 e Å3
233 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.033 (7)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.0819 (2)0.7951 (2)0.99656 (11)0.0571 (5)
N1−0.1889 (3)0.6301 (2)1.08273 (13)0.0522 (5)
C10.2813 (3)0.8077 (3)1.12657 (18)0.0596 (7)
H1B0.37630.86701.09740.071*
N20.0057 (3)0.8438 (2)0.81930 (13)0.0511 (5)
O20.2873 (2)0.9553 (2)0.80096 (12)0.0695 (6)
C20.3046 (4)0.7675 (4)1.21478 (19)0.0667 (7)
H2B0.41550.80051.24370.080*
C30.1700 (4)0.6819 (4)1.25913 (18)0.0656 (7)
H3A0.18940.65531.31780.079*
N30.2016 (3)0.9460 (3)0.71676 (15)0.0714 (7)
C4−0.0008 (3)0.6320 (3)1.21701 (17)0.0551 (6)
C5−0.1489 (4)0.5465 (3)1.25918 (18)0.0642 (7)
H5A−0.13740.51791.31810.077*
C6−0.3092 (4)0.5051 (3)1.21418 (19)0.0653 (7)
H6A−0.40840.44831.24160.078*
C7−0.3218 (3)0.5497 (3)1.12629 (18)0.0594 (7)
H7A−0.43230.52061.09620.071*
C8−0.0273 (3)0.6721 (3)1.12723 (16)0.0475 (6)
C90.1196 (3)0.7605 (3)1.08256 (16)0.0486 (6)
C100.2240 (3)0.8842 (3)0.94993 (17)0.0557 (6)
H10A0.33860.82190.95280.067*
H10B0.24601.00220.97570.067*
C110.1608 (3)0.8911 (3)0.85698 (17)0.0511 (6)
C120.0369 (3)0.8783 (3)0.73185 (16)0.0535 (6)
C13−0.0981 (3)0.8373 (3)0.66076 (16)0.0553 (6)
C14−0.2843 (4)0.8113 (3)0.67896 (17)0.0617 (7)
H14A−0.32490.81610.73740.074*
C15−0.4105 (4)0.7784 (4)0.61087 (18)0.0687 (7)
H15A−0.53560.76280.62450.082*
C16−0.3573 (4)0.7677 (3)0.52325 (17)0.0677 (8)
C17−0.1699 (5)0.7904 (4)0.50615 (19)0.0847 (9)
H17A−0.12910.78260.44780.102*
C18−0.0424 (4)0.8242 (4)0.57307 (19)0.0814 (9)
H18A0.08280.83850.55940.098*
C19−0.4974 (5)0.7358 (4)0.45006 (19)0.0905 (10)
H19A−0.43520.73390.39400.136*
H19B−0.58450.82820.45230.136*
H19C−0.56220.62500.45710.136*
OW−0.3313 (2)0.7299 (3)0.91840 (14)0.0733 (6)
HWB−0.236 (5)0.757 (4)0.8819 (19)0.088*
HWA−0.274 (4)0.682 (4)0.967 (2)0.088*
U11U22U33U12U13U23
O10.0383 (8)0.0683 (11)0.0639 (11)−0.0106 (8)−0.0065 (8)0.0075 (8)
N10.0400 (10)0.0500 (11)0.0661 (13)−0.0038 (9)−0.0033 (10)0.0013 (9)
C10.0387 (13)0.0624 (16)0.0769 (19)0.0010 (11)−0.0102 (12)−0.0030 (13)
N20.0425 (11)0.0550 (12)0.0551 (12)−0.0019 (9)0.0074 (9)−0.0021 (9)
O20.0450 (10)0.0884 (13)0.0744 (13)−0.0133 (9)0.0078 (9)0.0081 (10)
C20.0498 (15)0.0751 (18)0.0742 (19)0.0041 (13)−0.0197 (14)−0.0088 (14)
C30.0634 (17)0.0752 (18)0.0579 (16)0.0075 (14)−0.0165 (14)−0.0034 (13)
N30.0556 (13)0.0913 (17)0.0670 (15)−0.0103 (12)0.0084 (12)0.0106 (12)
C40.0528 (14)0.0486 (13)0.0640 (16)0.0094 (11)−0.0032 (12)−0.0022 (11)
C50.0694 (18)0.0598 (16)0.0643 (17)0.0119 (14)0.0029 (14)0.0052 (13)
C60.0580 (16)0.0608 (16)0.0773 (19)−0.0011 (13)0.0091 (14)0.0079 (14)
C70.0457 (14)0.0567 (15)0.0753 (18)−0.0028 (12)−0.0016 (13)0.0017 (13)
C80.0405 (12)0.0420 (12)0.0595 (15)0.0032 (10)−0.0053 (11)−0.0046 (10)
C90.0370 (12)0.0478 (13)0.0607 (15)0.0047 (10)−0.0081 (11)−0.0021 (11)
C100.0327 (11)0.0617 (15)0.0713 (17)−0.0062 (11)0.0050 (11)−0.0053 (12)
C110.0351 (12)0.0505 (13)0.0668 (16)−0.0005 (10)0.0058 (11)−0.0041 (11)
C120.0478 (13)0.0534 (14)0.0592 (16)0.0016 (11)0.0118 (11)0.0019 (11)
C130.0573 (15)0.0544 (14)0.0540 (15)0.0009 (12)0.0074 (12)0.0002 (11)
C140.0577 (15)0.0757 (17)0.0516 (15)0.0001 (13)0.0060 (12)0.0021 (12)
C150.0590 (15)0.0846 (19)0.0623 (18)−0.0007 (14)−0.0003 (13)0.0034 (14)
C160.085 (2)0.0642 (17)0.0536 (17)0.0042 (15)−0.0039 (14)0.0020 (13)
C170.090 (2)0.112 (3)0.0512 (17)−0.0007 (19)0.0109 (16)−0.0037 (16)
C180.0700 (18)0.111 (2)0.0616 (18)−0.0049 (17)0.0182 (16)−0.0037 (16)
C190.111 (3)0.100 (2)0.0606 (18)0.003 (2)−0.0170 (18)0.0006 (17)
OW0.0446 (10)0.1012 (15)0.0735 (13)−0.0152 (10)−0.0081 (9)0.0147 (11)
O1—C91.366 (3)C7—H7A0.9300
O1—C101.415 (3)C8—C91.422 (3)
N1—C71.313 (3)C10—C111.479 (4)
N1—C81.363 (3)C10—H10A0.9700
C1—C91.368 (3)C10—H10B0.9700
C1—C21.392 (4)C12—C131.462 (3)
C1—H1B0.9300C13—C141.380 (4)
N2—C111.285 (3)C13—C181.386 (4)
N2—C121.376 (3)C14—C151.379 (4)
O2—C111.340 (3)C14—H14A0.9300
O2—N31.410 (3)C15—C161.379 (4)
C2—C31.346 (4)C15—H15A0.9300
C2—H2B0.9300C16—C171.381 (4)
C3—C41.415 (3)C16—C191.501 (4)
C3—H3A0.9300C17—C181.373 (4)
N3—C121.301 (3)C17—H17A0.9300
C4—C51.400 (4)C18—H18A0.9300
C4—C81.418 (3)C19—H19A0.9600
C5—C61.358 (4)C19—H19B0.9600
C5—H5A0.9300C19—H19C0.9600
C6—C71.389 (4)OW—HWB0.91 (3)
C6—H6A0.9300OW—HWA0.94 (3)
C9—O1—C10116.60 (18)O1—C10—H10B110.3
C7—N1—C8117.4 (2)C11—C10—H10B110.3
C9—C1—C2120.5 (2)H10A—C10—H10B108.5
C9—C1—H1B119.8N2—C11—O2113.4 (2)
C2—C1—H1B119.8N2—C11—C10131.4 (2)
C11—N2—C12103.1 (2)O2—C11—C10115.16 (19)
C11—O2—N3105.97 (17)N3—C12—N2114.0 (2)
C3—C2—C1121.4 (2)N3—C12—C13122.2 (2)
C3—C2—H2B119.3N2—C12—C13123.9 (2)
C1—C2—H2B119.3C14—C13—C18118.2 (3)
C2—C3—C4120.4 (3)C14—C13—C12121.0 (2)
C2—C3—H3A119.8C18—C13—C12120.8 (2)
C4—C3—H3A119.8C15—C14—C13120.2 (2)
C12—N3—O2103.59 (19)C15—C14—H14A119.9
C5—C4—C3123.8 (3)C13—C14—H14A119.9
C5—C4—C8117.1 (2)C14—C15—C16122.2 (3)
C3—C4—C8119.0 (2)C14—C15—H15A118.9
C6—C5—C4120.1 (3)C16—C15—H15A118.9
C6—C5—H5A120.0C15—C16—C17116.9 (3)
C4—C5—H5A120.0C15—C16—C19121.3 (3)
C5—C6—C7118.5 (3)C17—C16—C19121.8 (3)
C5—C6—H6A120.7C18—C17—C16121.7 (3)
C7—C6—H6A120.7C18—C17—H17A119.2
N1—C7—C6124.6 (2)C16—C17—H17A119.2
N1—C7—H7A117.7C17—C18—C13120.8 (3)
C6—C7—H7A117.7C17—C18—H18A119.6
N1—C8—C4122.3 (2)C13—C18—H18A119.6
N1—C8—C9119.1 (2)C16—C19—H19A109.5
C4—C8—C9118.7 (2)C16—C19—H19B109.5
O1—C9—C1125.1 (2)H19A—C19—H19B109.5
O1—C9—C8114.81 (19)C16—C19—H19C109.5
C1—C9—C8120.1 (2)H19A—C19—H19C109.5
O1—C10—C11107.17 (18)H19B—C19—H19C109.5
O1—C10—H10A110.3HWB—OW—HWA104 (3)
C11—C10—H10A110.3
C9—C1—C2—C30.0 (4)C12—N2—C11—O20.9 (3)
C1—C2—C3—C4−0.8 (4)C12—N2—C11—C10−177.9 (2)
C11—O2—N3—C12−0.1 (3)N3—O2—C11—N2−0.5 (3)
C2—C3—C4—C5−178.5 (2)N3—O2—C11—C10178.5 (2)
C2—C3—C4—C80.6 (4)O1—C10—C11—N25.4 (4)
C3—C4—C5—C6179.2 (2)O1—C10—C11—O2−173.34 (19)
C8—C4—C5—C60.1 (4)O2—N3—C12—N20.7 (3)
C4—C5—C6—C70.0 (4)O2—N3—C12—C13−177.1 (2)
C8—N1—C7—C60.1 (4)C11—N2—C12—N3−1.0 (3)
C5—C6—C7—N1−0.1 (4)C11—N2—C12—C13176.7 (2)
C7—N1—C8—C40.0 (3)N3—C12—C13—C14−162.3 (3)
C7—N1—C8—C9−179.5 (2)N2—C12—C13—C1420.1 (4)
C5—C4—C8—N1−0.1 (3)N3—C12—C13—C1817.4 (4)
C3—C4—C8—N1−179.2 (2)N2—C12—C13—C18−160.1 (3)
C5—C4—C8—C9179.4 (2)C18—C13—C14—C15−1.8 (4)
C3—C4—C8—C90.3 (3)C12—C13—C14—C15177.9 (2)
C10—O1—C9—C11.1 (3)C13—C14—C15—C160.9 (4)
C10—O1—C9—C8179.53 (19)C14—C15—C16—C170.4 (4)
C2—C1—C9—O1179.3 (2)C14—C15—C16—C19−178.6 (3)
C2—C1—C9—C80.9 (4)C15—C16—C17—C18−0.7 (5)
N1—C8—C9—O10.0 (3)C19—C16—C17—C18178.2 (3)
C4—C8—C9—O1−179.54 (19)C16—C17—C18—C13−0.2 (5)
N1—C8—C9—C1178.5 (2)C14—C13—C18—C171.5 (5)
C4—C8—C9—C1−1.1 (3)C12—C13—C18—C17−178.2 (3)
C9—O1—C10—C11174.34 (18)
D—H···AD—HH···AD···AD—H···A
OW—HWB···N20.91 (3)2.09 (3)2.980 (3)169 (3)
OW—HWA···N10.94 (3)1.91 (3)2.830 (3)165 (3)
C7—H7A···OWi0.932.513.272 (3)139
C10—H10A···OWii0.972.553.482 (3)160
C10—H10B···OWiii0.972.593.534 (3)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
OW—HWB⋯N20.91 (3)2.09 (3)2.980 (3)169 (3)
OW—HWA⋯N10.94 (3)1.91 (3)2.830 (3)165 (3)
C7—H7A⋯OW i 0.932.513.272 (3)139
C10—H10A⋯OW ii 0.972.553.482 (3)160
C10—H10B⋯OW iii 0.972.593.534 (3)164

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and biological activity of 1,2,4-oxadiazole derivatives: highly potent and efficacious agonists for cortical muscarinic receptors.

Authors:  L J Street; R Baker; T Book; C O Kneen; A M MacLeod; K J Merchant; G A Showell; J Saunders; R H Herbert; S B Freedman
Journal:  J Med Chem       Date:  1990-10       Impact factor: 7.446

  2 in total

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