| Literature DB >> 24098197 |
Suchada Chantrapromma1, Thitipone Suwunwong, Pumsak Ruanwas, Ching Kheng Quah, Hoong-Kun Fun.
Abstract
In the title 3-cyano-pyridine derivative, C21H19N3O4, the 3-cyano-substituted pyridine ring forms dihedral angles of 2.35 (5) and 41.60 (5)° with the unsubstituted pyridine and 2,4,5-trimeth-oxy-substituted benzene rings, respectively. The dihedral angle between the unsubstituted pyridine and benzene rings is 39.84 (5)°. The meth-oxy groups form Cmeth-yl-O-C-(C,N) torsion angles in the range 0.80 (15)-11.45 (15)°. In the crystal, mol-ecules related by 21 screw axes are linked by weak C-H⋯N hydrogen bonds along [010]. In addition, weak C-H⋯π inter-actions and π-π stacking inter-actions between pyridine rings, with a centroid-centroid distance of 3.6448 (6) Å, are observed.Entities:
Year: 2013 PMID: 24098197 PMCID: PMC3790375 DOI: 10.1107/S1600536813023891
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C21H19N3O4 | |
| Monoclinic, | Melting point = 506–507 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 5182 reflections | |
| θ = 2.4–30.0° | |
| µ = 0.10 mm−1 | |
| β = 114.080 (1)° | |
| Block, colorless | |
| 0.60 × 0.29 × 0.23 mm |
| Bruker APEXII CCD area-detector diffractometer | 5182 independent reflections |
| Radiation source: sealed tube | 4386 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 30.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 20323 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 5182 reflections | (Δ/σ)max = 0.001 |
| 257 parameters | Δρmax = 0.40 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.08878 (6) | 0.11337 (11) | −0.09750 (5) | 0.01663 (17) | |
| O2 | 0.21018 (6) | 0.46941 (10) | 0.24541 (5) | 0.01852 (17) | |
| O3 | 0.48961 (5) | 0.12019 (10) | 0.42643 (5) | 0.01676 (17) | |
| O4 | 0.44854 (6) | −0.13384 (11) | 0.31664 (5) | 0.02014 (18) | |
| N1 | −0.10990 (7) | 0.40828 (13) | 0.10405 (6) | 0.01619 (19) | |
| N2 | −0.00502 (6) | 0.22953 (12) | −0.03257 (5) | 0.01373 (18) | |
| N3 | 0.32255 (7) | 0.04540 (15) | 0.03661 (7) | 0.0231 (2) | |
| C1 | −0.19408 (8) | 0.48087 (15) | 0.09883 (7) | 0.0174 (2) | |
| H1A | −0.1982 | 0.5191 | 0.1489 | 0.021* | |
| C2 | −0.27560 (8) | 0.50345 (15) | 0.02446 (7) | 0.0176 (2) | |
| H2A | −0.3340 | 0.5543 | 0.0239 | 0.021* | |
| C3 | −0.26961 (8) | 0.44990 (16) | −0.04895 (7) | 0.0187 (2) | |
| H3A | −0.3240 | 0.4640 | −0.1009 | 0.022* | |
| C4 | −0.18290 (8) | 0.37531 (15) | −0.04529 (7) | 0.0160 (2) | |
| H4A | −0.1768 | 0.3381 | −0.0947 | 0.019* | |
| C5 | −0.10496 (7) | 0.35617 (13) | 0.03249 (6) | 0.01291 (19) | |
| C6 | −0.01002 (7) | 0.27984 (13) | 0.03969 (6) | 0.01266 (19) | |
| C7 | 0.06802 (7) | 0.26430 (14) | 0.11670 (6) | 0.0139 (2) | |
| H7A | 0.0605 | 0.2991 | 0.1658 | 0.017* | |
| C8 | 0.15792 (7) | 0.19739 (13) | 0.12237 (6) | 0.01287 (19) | |
| C9 | 0.16324 (7) | 0.14605 (14) | 0.04744 (6) | 0.01298 (19) | |
| C10 | 0.07884 (7) | 0.16495 (14) | −0.02772 (6) | 0.01309 (19) | |
| C11 | 0.24309 (7) | 0.18194 (14) | 0.20364 (6) | 0.01303 (19) | |
| C12 | 0.26734 (7) | 0.31794 (14) | 0.26440 (6) | 0.0139 (2) | |
| C13 | 0.34940 (7) | 0.30003 (14) | 0.33993 (6) | 0.0140 (2) | |
| H13A | 0.3648 | 0.3925 | 0.3808 | 0.017* | |
| C14 | 0.40836 (7) | 0.14785 (14) | 0.35544 (6) | 0.01330 (19) | |
| C15 | 0.38513 (7) | 0.00954 (14) | 0.29540 (7) | 0.0144 (2) | |
| C16 | 0.30335 (7) | 0.02751 (14) | 0.22149 (6) | 0.01395 (19) | |
| H16A | 0.2872 | −0.0669 | 0.1815 | 0.017* | |
| C17 | 0.00747 (8) | 0.15056 (17) | −0.17547 (7) | 0.0197 (2) | |
| H17A | 0.0223 | 0.1065 | −0.2216 | 0.030* | |
| H17B | −0.0042 | 0.2811 | −0.1813 | 0.030* | |
| H17C | −0.0510 | 0.0894 | −0.1766 | 0.030* | |
| C18 | 0.25207 (8) | 0.08862 (14) | 0.04235 (7) | 0.0156 (2) | |
| C19 | 0.22509 (8) | 0.59686 (15) | 0.31086 (7) | 0.0179 (2) | |
| H19A | 0.1754 | 0.6919 | 0.2905 | 0.027* | |
| H19B | 0.2901 | 0.6508 | 0.3286 | 0.027* | |
| H19C | 0.2199 | 0.5350 | 0.3582 | 0.027* | |
| C20 | 0.51581 (8) | 0.25983 (15) | 0.48834 (7) | 0.0176 (2) | |
| H20A | 0.5748 | 0.2240 | 0.5366 | 0.026* | |
| H20B | 0.4622 | 0.2786 | 0.5057 | 0.026* | |
| H20C | 0.5284 | 0.3722 | 0.4649 | 0.026* | |
| C21 | 0.43561 (9) | −0.26391 (16) | 0.25325 (8) | 0.0222 (2) | |
| H21A | 0.4884 | −0.3531 | 0.2740 | 0.033* | |
| H21B | 0.4369 | −0.2032 | 0.2042 | 0.033* | |
| H21C | 0.3727 | −0.3249 | 0.2380 | 0.033* |
| O1 | 0.0182 (4) | 0.0217 (4) | 0.0112 (3) | 0.0019 (3) | 0.0073 (3) | −0.0016 (3) |
| O2 | 0.0206 (4) | 0.0147 (4) | 0.0154 (4) | 0.0058 (3) | 0.0025 (3) | −0.0031 (3) |
| O3 | 0.0152 (3) | 0.0164 (4) | 0.0146 (4) | 0.0022 (3) | 0.0019 (3) | −0.0016 (3) |
| O4 | 0.0214 (4) | 0.0175 (4) | 0.0186 (4) | 0.0082 (3) | 0.0052 (3) | −0.0020 (3) |
| N1 | 0.0170 (4) | 0.0174 (4) | 0.0164 (4) | 0.0018 (3) | 0.0091 (3) | 0.0008 (3) |
| N2 | 0.0147 (4) | 0.0135 (4) | 0.0135 (4) | −0.0011 (3) | 0.0063 (3) | −0.0006 (3) |
| N3 | 0.0234 (5) | 0.0244 (5) | 0.0266 (5) | 0.0047 (4) | 0.0154 (4) | 0.0035 (4) |
| C1 | 0.0202 (5) | 0.0171 (5) | 0.0187 (5) | 0.0027 (4) | 0.0119 (4) | 0.0012 (4) |
| C2 | 0.0152 (5) | 0.0150 (5) | 0.0248 (6) | 0.0012 (4) | 0.0104 (4) | 0.0006 (4) |
| C3 | 0.0143 (4) | 0.0197 (5) | 0.0196 (5) | 0.0000 (4) | 0.0043 (4) | −0.0017 (4) |
| C4 | 0.0160 (4) | 0.0168 (5) | 0.0152 (5) | −0.0007 (4) | 0.0062 (4) | −0.0025 (4) |
| C5 | 0.0141 (4) | 0.0111 (4) | 0.0153 (5) | −0.0013 (3) | 0.0077 (4) | 0.0000 (3) |
| C6 | 0.0142 (4) | 0.0110 (4) | 0.0144 (5) | −0.0008 (3) | 0.0075 (4) | −0.0004 (3) |
| C7 | 0.0150 (4) | 0.0148 (4) | 0.0135 (5) | −0.0001 (4) | 0.0074 (4) | −0.0011 (3) |
| C8 | 0.0141 (4) | 0.0120 (4) | 0.0129 (4) | −0.0006 (3) | 0.0059 (4) | −0.0001 (3) |
| C9 | 0.0139 (4) | 0.0122 (4) | 0.0142 (5) | 0.0003 (3) | 0.0072 (4) | −0.0002 (3) |
| C10 | 0.0167 (4) | 0.0119 (4) | 0.0120 (4) | −0.0006 (3) | 0.0073 (4) | −0.0005 (3) |
| C11 | 0.0128 (4) | 0.0144 (5) | 0.0125 (4) | 0.0001 (3) | 0.0058 (3) | 0.0000 (3) |
| C12 | 0.0140 (4) | 0.0135 (5) | 0.0146 (5) | 0.0013 (4) | 0.0061 (4) | 0.0005 (4) |
| C13 | 0.0152 (4) | 0.0136 (5) | 0.0134 (5) | 0.0001 (4) | 0.0059 (4) | −0.0011 (4) |
| C14 | 0.0123 (4) | 0.0152 (5) | 0.0124 (4) | −0.0005 (3) | 0.0051 (4) | 0.0014 (3) |
| C15 | 0.0151 (4) | 0.0130 (5) | 0.0167 (5) | 0.0022 (4) | 0.0083 (4) | 0.0010 (4) |
| C16 | 0.0158 (4) | 0.0136 (5) | 0.0135 (5) | −0.0004 (4) | 0.0071 (4) | −0.0016 (4) |
| C17 | 0.0215 (5) | 0.0256 (6) | 0.0107 (5) | −0.0002 (4) | 0.0051 (4) | 0.0000 (4) |
| C18 | 0.0183 (5) | 0.0152 (5) | 0.0143 (5) | 0.0003 (4) | 0.0078 (4) | 0.0011 (4) |
| C19 | 0.0188 (5) | 0.0158 (5) | 0.0172 (5) | 0.0028 (4) | 0.0055 (4) | −0.0041 (4) |
| C20 | 0.0156 (5) | 0.0177 (5) | 0.0162 (5) | −0.0018 (4) | 0.0030 (4) | −0.0029 (4) |
| C21 | 0.0273 (6) | 0.0188 (5) | 0.0225 (6) | 0.0059 (4) | 0.0122 (5) | −0.0033 (4) |
| O1—C10 | 1.3499 (12) | C8—C9 | 1.4041 (14) |
| O1—C17 | 1.4415 (13) | C8—C11 | 1.4820 (13) |
| O2—C12 | 1.3676 (12) | C9—C10 | 1.4152 (13) |
| O2—C19 | 1.4332 (13) | C9—C18 | 1.4355 (14) |
| O3—C14 | 1.3576 (12) | C11—C12 | 1.4036 (14) |
| O3—C20 | 1.4349 (13) | C11—C16 | 1.4110 (14) |
| O4—C15 | 1.3715 (12) | C12—C13 | 1.4006 (14) |
| O4—C21 | 1.4250 (14) | C13—C14 | 1.3888 (14) |
| N1—C1 | 1.3403 (14) | C13—H13A | 0.9500 |
| N1—C5 | 1.3465 (13) | C14—C15 | 1.4085 (14) |
| N2—C10 | 1.3152 (13) | C15—C16 | 1.3819 (14) |
| N2—C6 | 1.3549 (13) | C16—H16A | 0.9500 |
| N3—C18 | 1.1476 (14) | C17—H17A | 0.9800 |
| C1—C2 | 1.3883 (15) | C17—H17B | 0.9800 |
| C1—H1A | 0.9500 | C17—H17C | 0.9800 |
| C2—C3 | 1.3876 (16) | C19—H19A | 0.9800 |
| C2—H2A | 0.9500 | C19—H19B | 0.9800 |
| C3—C4 | 1.3899 (15) | C19—H19C | 0.9800 |
| C3—H3A | 0.9500 | C20—H20A | 0.9800 |
| C4—C5 | 1.3970 (14) | C20—H20B | 0.9800 |
| C4—H4A | 0.9500 | C20—H20C | 0.9800 |
| C5—C6 | 1.4885 (14) | C21—H21A | 0.9800 |
| C6—C7 | 1.3866 (14) | C21—H21B | 0.9800 |
| C7—C8 | 1.4013 (14) | C21—H21C | 0.9800 |
| C7—H7A | 0.9500 | ||
| C10—O1—C17 | 116.48 (8) | O2—C12—C11 | 117.43 (9) |
| C12—O2—C19 | 117.84 (8) | C13—C12—C11 | 120.54 (9) |
| C14—O3—C20 | 116.99 (8) | C14—C13—C12 | 120.38 (9) |
| C15—O4—C21 | 116.88 (8) | C14—C13—H13A | 119.8 |
| C1—N1—C5 | 117.40 (9) | C12—C13—H13A | 119.8 |
| C10—N2—C6 | 117.15 (9) | O3—C14—C13 | 124.30 (9) |
| N1—C1—C2 | 123.76 (10) | O3—C14—C15 | 115.72 (9) |
| N1—C1—H1A | 118.1 | C13—C14—C15 | 119.98 (9) |
| C2—C1—H1A | 118.1 | O4—C15—C16 | 125.54 (9) |
| C3—C2—C1 | 118.37 (10) | O4—C15—C14 | 115.26 (9) |
| C3—C2—H2A | 120.8 | C16—C15—C14 | 119.20 (9) |
| C1—C2—H2A | 120.8 | C15—C16—C11 | 121.96 (9) |
| C2—C3—C4 | 119.00 (10) | C15—C16—H16A | 119.0 |
| C2—C3—H3A | 120.5 | C11—C16—H16A | 119.0 |
| C4—C3—H3A | 120.5 | O1—C17—H17A | 109.5 |
| C3—C4—C5 | 118.62 (10) | O1—C17—H17B | 109.5 |
| C3—C4—H4A | 120.7 | H17A—C17—H17B | 109.5 |
| C5—C4—H4A | 120.7 | O1—C17—H17C | 109.5 |
| N1—C5—C4 | 122.85 (9) | H17A—C17—H17C | 109.5 |
| N1—C5—C6 | 116.40 (9) | H17B—C17—H17C | 109.5 |
| C4—C5—C6 | 120.73 (9) | N3—C18—C9 | 178.32 (12) |
| N2—C6—C7 | 123.03 (9) | O2—C19—H19A | 109.5 |
| N2—C6—C5 | 116.20 (9) | O2—C19—H19B | 109.5 |
| C7—C6—C5 | 120.77 (9) | H19A—C19—H19B | 109.5 |
| C6—C7—C8 | 120.21 (9) | O2—C19—H19C | 109.5 |
| C6—C7—H7A | 119.9 | H19A—C19—H19C | 109.5 |
| C8—C7—H7A | 119.9 | H19B—C19—H19C | 109.5 |
| C7—C8—C9 | 116.76 (9) | O3—C20—H20A | 109.5 |
| C7—C8—C11 | 121.44 (9) | O3—C20—H20B | 109.5 |
| C9—C8—C11 | 121.80 (9) | H20A—C20—H20B | 109.5 |
| C8—C9—C10 | 118.53 (9) | O3—C20—H20C | 109.5 |
| C8—C9—C18 | 123.23 (9) | H20A—C20—H20C | 109.5 |
| C10—C9—C18 | 118.06 (9) | H20B—C20—H20C | 109.5 |
| N2—C10—O1 | 120.08 (9) | O4—C21—H21A | 109.5 |
| N2—C10—C9 | 124.32 (9) | O4—C21—H21B | 109.5 |
| O1—C10—C9 | 115.60 (9) | H21A—C21—H21B | 109.5 |
| C12—C11—C16 | 117.94 (9) | O4—C21—H21C | 109.5 |
| C12—C11—C8 | 122.14 (9) | H21A—C21—H21C | 109.5 |
| C16—C11—C8 | 119.92 (9) | H21B—C21—H21C | 109.5 |
| O2—C12—C13 | 121.99 (9) | ||
| C5—N1—C1—C2 | 0.52 (16) | C8—C9—C10—O1 | 179.95 (9) |
| N1—C1—C2—C3 | −0.76 (17) | C18—C9—C10—O1 | 4.76 (14) |
| C1—C2—C3—C4 | 0.29 (16) | C7—C8—C11—C12 | −42.34 (15) |
| C2—C3—C4—C5 | 0.33 (16) | C9—C8—C11—C12 | 137.61 (11) |
| C1—N1—C5—C4 | 0.16 (15) | C7—C8—C11—C16 | 138.34 (10) |
| C1—N1—C5—C6 | 178.65 (9) | C9—C8—C11—C16 | −41.70 (14) |
| C3—C4—C5—N1 | −0.58 (16) | C19—O2—C12—C13 | −11.45 (15) |
| C3—C4—C5—C6 | −179.01 (10) | C19—O2—C12—C11 | 171.00 (9) |
| C10—N2—C6—C7 | −0.63 (15) | C16—C11—C12—O2 | 178.04 (9) |
| C10—N2—C6—C5 | 178.74 (9) | C8—C11—C12—O2 | −1.29 (15) |
| N1—C5—C6—N2 | −179.26 (9) | C16—C11—C12—C13 | 0.46 (15) |
| C4—C5—C6—N2 | −0.74 (14) | C8—C11—C12—C13 | −178.87 (9) |
| N1—C5—C6—C7 | 0.12 (14) | O2—C12—C13—C14 | −176.97 (10) |
| C4—C5—C6—C7 | 178.65 (10) | C11—C12—C13—C14 | 0.50 (16) |
| N2—C6—C7—C8 | 1.31 (16) | C20—O3—C14—C13 | −0.80 (15) |
| C5—C6—C7—C8 | −178.03 (9) | C20—O3—C14—C15 | 179.26 (9) |
| C6—C7—C8—C9 | −0.94 (15) | C12—C13—C14—O3 | 179.36 (10) |
| C6—C7—C8—C11 | 179.02 (9) | C12—C13—C14—C15 | −0.70 (16) |
| C7—C8—C9—C10 | 0.02 (14) | C21—O4—C15—C16 | 8.11 (16) |
| C11—C8—C9—C10 | −179.94 (9) | C21—O4—C15—C14 | −171.38 (10) |
| C7—C8—C9—C18 | 174.95 (9) | O3—C14—C15—O4 | −0.60 (14) |
| C11—C8—C9—C18 | −5.01 (16) | C13—C14—C15—O4 | 179.45 (9) |
| C6—N2—C10—O1 | −179.62 (9) | O3—C14—C15—C16 | 179.88 (9) |
| C6—N2—C10—C9 | −0.37 (15) | C13—C14—C15—C16 | −0.07 (15) |
| C17—O1—C10—N2 | 6.18 (14) | O4—C15—C16—C11 | −178.40 (10) |
| C17—O1—C10—C9 | −173.13 (9) | C14—C15—C16—C11 | 1.06 (16) |
| C8—C9—C10—N2 | 0.67 (16) | C12—C11—C16—C15 | −1.25 (15) |
| C18—C9—C10—N2 | −174.53 (10) | C8—C11—C16—C15 | 178.09 (10) |
| H··· | ||||
| C20—H20 | 0.98 | 2.59 | 3.3774 (17) | 138 |
| C1—H1 | 0.95 | 2.89 | 3.7062 (13) | 145 |
Hydrogen-bond geometry (Å, °)
Cg 3 is the centroid of the C11–C16 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C20—H20 | 0.98 | 2.59 | 3.3774 (17) | 138 |
| C1—H1 | 0.95 | 2.89 | 3.7062 (13) | 145 |
Symmetry codes: (i) ; (ii) .