Literature DB >> 24098197

6-Meth-oxy-4-(2,4,5-tri-meth-oxy-phen-yl)-2,2'-bi-pyridine-5-carbo-nitrile.

Suchada Chantrapromma1, Thitipone Suwunwong, Pumsak Ruanwas, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the title 3-cyano-pyridine derivative, C21H19N3O4, the 3-cyano-substituted pyridine ring forms dihedral angles of 2.35 (5) and 41.60 (5)° with the unsubstituted pyridine and 2,4,5-trimeth-oxy-substituted benzene rings, respectively. The dihedral angle between the unsubstituted pyridine and benzene rings is 39.84 (5)°. The meth-oxy groups form Cmeth-yl-O-C-(C,N) torsion angles in the range 0.80 (15)-11.45 (15)°. In the crystal, mol-ecules related by 21 screw axes are linked by weak C-H⋯N hydrogen bonds along [010]. In addition, weak C-H⋯π inter-actions and π-π stacking inter-actions between pyridine rings, with a centroid-centroid distance of 3.6448 (6) Å, are observed.

Entities:  

Year:  2013        PMID: 24098197      PMCID: PMC3790375          DOI: 10.1107/S1600536813023891

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis and applications of 3-cyano­pyridine derivatives, see: Al-Jaber et al. (2012 ▶); Brandt et al. (2010 ▶); El-Sayed et al. (2011 ▶); Ji et al. (2007 ▶); Kim et al. (2005 ▶); Koner et al. (2012 ▶); Suwunwong et al. (2011 ▶); Zhou et al. (2006 ▶). For related structures, see: Chantrapromma et al. (2010 ▶); Suwunwong et al. (2012 ▶). For standard bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C21H19N3O4 M = 377.39 Monoclinic, a = 14.9967 (3) Å b = 7.4039 (2) Å c = 17.5795 (4) Å β = 114.080 (1)° V = 1782.06 (7) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 100 K 0.60 × 0.29 × 0.23 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.943, T max = 0.977 20323 measured reflections 5182 independent reflections 4386 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.116 S = 1.03 5182 reflections 257 parameters H-atom parameters constrained Δρmax = 0.40 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶), Mercury (Macrae et al., 2006 ▶) and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813023891/lh5641sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813023891/lh5641Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813023891/lh5641Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H19N3O4F(000) = 792
Mr = 377.39Dx = 1.407 Mg m3
Monoclinic, P21/cMelting point = 506–507 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 14.9967 (3) ÅCell parameters from 5182 reflections
b = 7.4039 (2) Åθ = 2.4–30.0°
c = 17.5795 (4) ŵ = 0.10 mm1
β = 114.080 (1)°T = 100 K
V = 1782.06 (7) Å3Block, colorless
Z = 40.60 × 0.29 × 0.23 mm
Bruker APEXII CCD area-detector diffractometer5182 independent reflections
Radiation source: sealed tube4386 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.030
φ and ω scansθmax = 30.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −21→21
Tmin = 0.943, Tmax = 0.977k = −10→10
20323 measured reflectionsl = −22→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.116H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0629P)2 + 0.5246P] where P = (Fo2 + 2Fc2)/3
5182 reflections(Δ/σ)max = 0.001
257 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.31 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.08878 (6)0.11337 (11)−0.09750 (5)0.01663 (17)
O20.21018 (6)0.46941 (10)0.24541 (5)0.01852 (17)
O30.48961 (5)0.12019 (10)0.42643 (5)0.01676 (17)
O40.44854 (6)−0.13384 (11)0.31664 (5)0.02014 (18)
N1−0.10990 (7)0.40828 (13)0.10405 (6)0.01619 (19)
N2−0.00502 (6)0.22953 (12)−0.03257 (5)0.01373 (18)
N30.32255 (7)0.04540 (15)0.03661 (7)0.0231 (2)
C1−0.19408 (8)0.48087 (15)0.09883 (7)0.0174 (2)
H1A−0.19820.51910.14890.021*
C2−0.27560 (8)0.50345 (15)0.02446 (7)0.0176 (2)
H2A−0.33400.55430.02390.021*
C3−0.26961 (8)0.44990 (16)−0.04895 (7)0.0187 (2)
H3A−0.32400.4640−0.10090.022*
C4−0.18290 (8)0.37531 (15)−0.04529 (7)0.0160 (2)
H4A−0.17680.3381−0.09470.019*
C5−0.10496 (7)0.35617 (13)0.03249 (6)0.01291 (19)
C6−0.01002 (7)0.27984 (13)0.03969 (6)0.01266 (19)
C70.06802 (7)0.26430 (14)0.11670 (6)0.0139 (2)
H7A0.06050.29910.16580.017*
C80.15792 (7)0.19739 (13)0.12237 (6)0.01287 (19)
C90.16324 (7)0.14605 (14)0.04744 (6)0.01298 (19)
C100.07884 (7)0.16495 (14)−0.02772 (6)0.01309 (19)
C110.24309 (7)0.18194 (14)0.20364 (6)0.01303 (19)
C120.26734 (7)0.31794 (14)0.26440 (6)0.0139 (2)
C130.34940 (7)0.30003 (14)0.33993 (6)0.0140 (2)
H13A0.36480.39250.38080.017*
C140.40836 (7)0.14785 (14)0.35544 (6)0.01330 (19)
C150.38513 (7)0.00954 (14)0.29540 (7)0.0144 (2)
C160.30335 (7)0.02751 (14)0.22149 (6)0.01395 (19)
H16A0.2872−0.06690.18150.017*
C170.00747 (8)0.15056 (17)−0.17547 (7)0.0197 (2)
H17A0.02230.1065−0.22160.030*
H17B−0.00420.2811−0.18130.030*
H17C−0.05100.0894−0.17660.030*
C180.25207 (8)0.08862 (14)0.04235 (7)0.0156 (2)
C190.22509 (8)0.59686 (15)0.31086 (7)0.0179 (2)
H19A0.17540.69190.29050.027*
H19B0.29010.65080.32860.027*
H19C0.21990.53500.35820.027*
C200.51581 (8)0.25983 (15)0.48834 (7)0.0176 (2)
H20A0.57480.22400.53660.026*
H20B0.46220.27860.50570.026*
H20C0.52840.37220.46490.026*
C210.43561 (9)−0.26391 (16)0.25325 (8)0.0222 (2)
H21A0.4884−0.35310.27400.033*
H21B0.4369−0.20320.20420.033*
H21C0.3727−0.32490.23800.033*
U11U22U33U12U13U23
O10.0182 (4)0.0217 (4)0.0112 (3)0.0019 (3)0.0073 (3)−0.0016 (3)
O20.0206 (4)0.0147 (4)0.0154 (4)0.0058 (3)0.0025 (3)−0.0031 (3)
O30.0152 (3)0.0164 (4)0.0146 (4)0.0022 (3)0.0019 (3)−0.0016 (3)
O40.0214 (4)0.0175 (4)0.0186 (4)0.0082 (3)0.0052 (3)−0.0020 (3)
N10.0170 (4)0.0174 (4)0.0164 (4)0.0018 (3)0.0091 (3)0.0008 (3)
N20.0147 (4)0.0135 (4)0.0135 (4)−0.0011 (3)0.0063 (3)−0.0006 (3)
N30.0234 (5)0.0244 (5)0.0266 (5)0.0047 (4)0.0154 (4)0.0035 (4)
C10.0202 (5)0.0171 (5)0.0187 (5)0.0027 (4)0.0119 (4)0.0012 (4)
C20.0152 (5)0.0150 (5)0.0248 (6)0.0012 (4)0.0104 (4)0.0006 (4)
C30.0143 (4)0.0197 (5)0.0196 (5)0.0000 (4)0.0043 (4)−0.0017 (4)
C40.0160 (4)0.0168 (5)0.0152 (5)−0.0007 (4)0.0062 (4)−0.0025 (4)
C50.0141 (4)0.0111 (4)0.0153 (5)−0.0013 (3)0.0077 (4)0.0000 (3)
C60.0142 (4)0.0110 (4)0.0144 (5)−0.0008 (3)0.0075 (4)−0.0004 (3)
C70.0150 (4)0.0148 (4)0.0135 (5)−0.0001 (4)0.0074 (4)−0.0011 (3)
C80.0141 (4)0.0120 (4)0.0129 (4)−0.0006 (3)0.0059 (4)−0.0001 (3)
C90.0139 (4)0.0122 (4)0.0142 (5)0.0003 (3)0.0072 (4)−0.0002 (3)
C100.0167 (4)0.0119 (4)0.0120 (4)−0.0006 (3)0.0073 (4)−0.0005 (3)
C110.0128 (4)0.0144 (5)0.0125 (4)0.0001 (3)0.0058 (3)0.0000 (3)
C120.0140 (4)0.0135 (5)0.0146 (5)0.0013 (4)0.0061 (4)0.0005 (4)
C130.0152 (4)0.0136 (5)0.0134 (5)0.0001 (4)0.0059 (4)−0.0011 (4)
C140.0123 (4)0.0152 (5)0.0124 (4)−0.0005 (3)0.0051 (4)0.0014 (3)
C150.0151 (4)0.0130 (5)0.0167 (5)0.0022 (4)0.0083 (4)0.0010 (4)
C160.0158 (4)0.0136 (5)0.0135 (5)−0.0004 (4)0.0071 (4)−0.0016 (4)
C170.0215 (5)0.0256 (6)0.0107 (5)−0.0002 (4)0.0051 (4)0.0000 (4)
C180.0183 (5)0.0152 (5)0.0143 (5)0.0003 (4)0.0078 (4)0.0011 (4)
C190.0188 (5)0.0158 (5)0.0172 (5)0.0028 (4)0.0055 (4)−0.0041 (4)
C200.0156 (5)0.0177 (5)0.0162 (5)−0.0018 (4)0.0030 (4)−0.0029 (4)
C210.0273 (6)0.0188 (5)0.0225 (6)0.0059 (4)0.0122 (5)−0.0033 (4)
O1—C101.3499 (12)C8—C91.4041 (14)
O1—C171.4415 (13)C8—C111.4820 (13)
O2—C121.3676 (12)C9—C101.4152 (13)
O2—C191.4332 (13)C9—C181.4355 (14)
O3—C141.3576 (12)C11—C121.4036 (14)
O3—C201.4349 (13)C11—C161.4110 (14)
O4—C151.3715 (12)C12—C131.4006 (14)
O4—C211.4250 (14)C13—C141.3888 (14)
N1—C11.3403 (14)C13—H13A0.9500
N1—C51.3465 (13)C14—C151.4085 (14)
N2—C101.3152 (13)C15—C161.3819 (14)
N2—C61.3549 (13)C16—H16A0.9500
N3—C181.1476 (14)C17—H17A0.9800
C1—C21.3883 (15)C17—H17B0.9800
C1—H1A0.9500C17—H17C0.9800
C2—C31.3876 (16)C19—H19A0.9800
C2—H2A0.9500C19—H19B0.9800
C3—C41.3899 (15)C19—H19C0.9800
C3—H3A0.9500C20—H20A0.9800
C4—C51.3970 (14)C20—H20B0.9800
C4—H4A0.9500C20—H20C0.9800
C5—C61.4885 (14)C21—H21A0.9800
C6—C71.3866 (14)C21—H21B0.9800
C7—C81.4013 (14)C21—H21C0.9800
C7—H7A0.9500
C10—O1—C17116.48 (8)O2—C12—C11117.43 (9)
C12—O2—C19117.84 (8)C13—C12—C11120.54 (9)
C14—O3—C20116.99 (8)C14—C13—C12120.38 (9)
C15—O4—C21116.88 (8)C14—C13—H13A119.8
C1—N1—C5117.40 (9)C12—C13—H13A119.8
C10—N2—C6117.15 (9)O3—C14—C13124.30 (9)
N1—C1—C2123.76 (10)O3—C14—C15115.72 (9)
N1—C1—H1A118.1C13—C14—C15119.98 (9)
C2—C1—H1A118.1O4—C15—C16125.54 (9)
C3—C2—C1118.37 (10)O4—C15—C14115.26 (9)
C3—C2—H2A120.8C16—C15—C14119.20 (9)
C1—C2—H2A120.8C15—C16—C11121.96 (9)
C2—C3—C4119.00 (10)C15—C16—H16A119.0
C2—C3—H3A120.5C11—C16—H16A119.0
C4—C3—H3A120.5O1—C17—H17A109.5
C3—C4—C5118.62 (10)O1—C17—H17B109.5
C3—C4—H4A120.7H17A—C17—H17B109.5
C5—C4—H4A120.7O1—C17—H17C109.5
N1—C5—C4122.85 (9)H17A—C17—H17C109.5
N1—C5—C6116.40 (9)H17B—C17—H17C109.5
C4—C5—C6120.73 (9)N3—C18—C9178.32 (12)
N2—C6—C7123.03 (9)O2—C19—H19A109.5
N2—C6—C5116.20 (9)O2—C19—H19B109.5
C7—C6—C5120.77 (9)H19A—C19—H19B109.5
C6—C7—C8120.21 (9)O2—C19—H19C109.5
C6—C7—H7A119.9H19A—C19—H19C109.5
C8—C7—H7A119.9H19B—C19—H19C109.5
C7—C8—C9116.76 (9)O3—C20—H20A109.5
C7—C8—C11121.44 (9)O3—C20—H20B109.5
C9—C8—C11121.80 (9)H20A—C20—H20B109.5
C8—C9—C10118.53 (9)O3—C20—H20C109.5
C8—C9—C18123.23 (9)H20A—C20—H20C109.5
C10—C9—C18118.06 (9)H20B—C20—H20C109.5
N2—C10—O1120.08 (9)O4—C21—H21A109.5
N2—C10—C9124.32 (9)O4—C21—H21B109.5
O1—C10—C9115.60 (9)H21A—C21—H21B109.5
C12—C11—C16117.94 (9)O4—C21—H21C109.5
C12—C11—C8122.14 (9)H21A—C21—H21C109.5
C16—C11—C8119.92 (9)H21B—C21—H21C109.5
O2—C12—C13121.99 (9)
C5—N1—C1—C20.52 (16)C8—C9—C10—O1179.95 (9)
N1—C1—C2—C3−0.76 (17)C18—C9—C10—O14.76 (14)
C1—C2—C3—C40.29 (16)C7—C8—C11—C12−42.34 (15)
C2—C3—C4—C50.33 (16)C9—C8—C11—C12137.61 (11)
C1—N1—C5—C40.16 (15)C7—C8—C11—C16138.34 (10)
C1—N1—C5—C6178.65 (9)C9—C8—C11—C16−41.70 (14)
C3—C4—C5—N1−0.58 (16)C19—O2—C12—C13−11.45 (15)
C3—C4—C5—C6−179.01 (10)C19—O2—C12—C11171.00 (9)
C10—N2—C6—C7−0.63 (15)C16—C11—C12—O2178.04 (9)
C10—N2—C6—C5178.74 (9)C8—C11—C12—O2−1.29 (15)
N1—C5—C6—N2−179.26 (9)C16—C11—C12—C130.46 (15)
C4—C5—C6—N2−0.74 (14)C8—C11—C12—C13−178.87 (9)
N1—C5—C6—C70.12 (14)O2—C12—C13—C14−176.97 (10)
C4—C5—C6—C7178.65 (10)C11—C12—C13—C140.50 (16)
N2—C6—C7—C81.31 (16)C20—O3—C14—C13−0.80 (15)
C5—C6—C7—C8−178.03 (9)C20—O3—C14—C15179.26 (9)
C6—C7—C8—C9−0.94 (15)C12—C13—C14—O3179.36 (10)
C6—C7—C8—C11179.02 (9)C12—C13—C14—C15−0.70 (16)
C7—C8—C9—C100.02 (14)C21—O4—C15—C168.11 (16)
C11—C8—C9—C10−179.94 (9)C21—O4—C15—C14−171.38 (10)
C7—C8—C9—C18174.95 (9)O3—C14—C15—O4−0.60 (14)
C11—C8—C9—C18−5.01 (16)C13—C14—C15—O4179.45 (9)
C6—N2—C10—O1−179.62 (9)O3—C14—C15—C16179.88 (9)
C6—N2—C10—C9−0.37 (15)C13—C14—C15—C16−0.07 (15)
C17—O1—C10—N26.18 (14)O4—C15—C16—C11−178.40 (10)
C17—O1—C10—C9−173.13 (9)C14—C15—C16—C111.06 (16)
C8—C9—C10—N20.67 (16)C12—C11—C16—C15−1.25 (15)
C18—C9—C10—N2−174.53 (10)C8—C11—C16—C15178.09 (10)
D—H···AD—HH···AD···AD—H···A
C20—H20C···N3i0.982.593.3774 (17)138
C1—H1A···Cg3ii0.952.893.7062 (13)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg 3 is the centroid of the C11–C16 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C20—H20C⋯N3i 0.982.593.3774 (17)138
C1—H1ACg3ii 0.952.893.7062 (13)145

Symmetry codes: (i) ; (ii) .

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-23
  1 in total

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