Literature DB >> 24098169

Di-bromido-bis-(2-methyl-1H-benzimidazole-κN (3))cadmium.

Bao-Cheng Liu1, Yan-Ling Jin, Fa-Qian Liu.   

Abstract

In the title compound, [CdBr2(C8H8N2)2], the Cd(II) atom has a distorted tetra-hedral coordination formed by the two imino N atoms of two 2-methyl-benzimidazole ligands and two terminal bromide ligands. The Cd(II) atom is slightly out of the benzimidazole planes by 0.320 (3) and 0.210 (3) Å. The dihedral angle between the benzimidazole planes is 71.6 (2)°. In the crystal, mol-ecules are linked by N-H⋯Br hydrogen bonds into puckered layers parallel to (001).

Entities:  

Year:  2013        PMID: 24098169      PMCID: PMC3790347          DOI: 10.1107/S1600536813024549

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to benzimidazole, see: Roderick et al. (1972 ▶). For related crystal structures, see: Barros-García et al. (2005 ▶); Wang et al. (2010 ▶); Yang et al. (2011 ▶).

Experimental

Crystal data

[CdBr2(C8H8N2)2] M = 536.54 Monoclinic, a = 10.007 (9) Å b = 14.747 (12) Å c = 12.399 (11) Å β = 93.088 (14)° V = 1827 (3) Å3 Z = 4 Mo Kα radiation μ = 5.57 mm−1 T = 296 K 0.22 × 0.18 × 0.16 mm

Data collection

Rigaku R-AXIS Spider diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.374, T max = 0.469 9698 measured reflections 3585 independent reflections 2748 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.077 S = 1.00 3585 reflections 210 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −1.02 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2004 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL (Sheldrick, 2008 ▶); molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813024549/kq2008sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813024549/kq2008Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813024549/kq2008Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[CdBr2(C8H8N2)2]F(000) = 1032
Mr = 536.54Dx = 1.951 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 3275 reflections
a = 10.007 (9) Åθ = 2.5–26.6°
b = 14.747 (12) ŵ = 5.57 mm1
c = 12.399 (11) ÅT = 296 K
β = 93.088 (14)°Block, colorless
V = 1827 (3) Å30.22 × 0.18 × 0.16 mm
Z = 4
Rigaku R-AXIS Spider diffractometer2748 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.032
Graphite monochromatorθmax = 26.0°, θmin = 2.0°
ω scansh = −12→10
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −18→14
Tmin = 0.374, Tmax = 0.469l = −15→14
9698 measured reflections13 standard reflections every 0 reflections
3585 independent reflections intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.077H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0407P)2] where P = (Fo2 + 2Fc2)/3
3585 reflections(Δ/σ)max = 0.001
210 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −1.02 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.3592 (3)0.96335 (19)0.8577 (2)0.0362 (7)
N20.5028 (4)0.8661 (2)0.9341 (3)0.0485 (9)
H20.57120.83110.94280.058*
N30.0723 (3)1.01679 (18)0.6820 (2)0.0339 (7)
N4−0.1049 (3)0.93220 (19)0.6357 (2)0.0417 (8)
H4−0.15540.88510.62900.050*
Br10.40130 (5)1.14156 (3)0.60773 (4)0.06071 (16)
Br20.20546 (5)1.20099 (3)0.88850 (4)0.06367 (17)
C10.4087 (4)0.8806 (2)1.0086 (3)0.0409 (9)
C20.3939 (5)0.8457 (3)1.1109 (3)0.0531 (12)
H2A0.45610.80601.14340.064*
C30.2816 (6)0.8730 (3)1.1622 (4)0.0626 (14)
H30.26810.85111.23110.075*
C40.1873 (6)0.9326 (3)1.1139 (4)0.0633 (13)
H4A0.11190.94821.15050.076*
C50.2045 (5)0.9687 (3)1.0127 (3)0.0535 (11)
H50.14321.00940.98120.064*
C60.3175 (4)0.9417 (2)0.9597 (3)0.0368 (9)
C70.4708 (4)0.9156 (2)0.8454 (3)0.0408 (9)
C80.5489 (5)0.9139 (3)0.7478 (4)0.0620 (13)
H8A0.49350.93380.68670.093*
H8B0.57930.85320.73550.093*
H8C0.62460.95360.75780.093*
C9−0.0236 (4)1.0707 (2)0.6250 (3)0.0332 (8)
C10−0.0180 (4)1.1618 (2)0.5961 (3)0.0420 (9)
H100.05711.19720.61310.050*
C11−0.1303 (5)1.1972 (3)0.5406 (3)0.0502 (11)
H11−0.12971.25750.51870.060*
C12−0.2441 (5)1.1449 (3)0.5168 (3)0.0531 (11)
H12−0.31841.17200.48200.064*
C13−0.2499 (4)1.0548 (3)0.5431 (3)0.0482 (10)
H13−0.32551.01990.52590.058*
C14−0.1372 (4)1.0184 (2)0.5966 (3)0.0364 (9)
C150.0180 (4)0.9343 (2)0.6856 (3)0.0386 (9)
C160.0818 (5)0.8531 (2)0.7384 (3)0.0577 (13)
H16A0.17490.85140.72330.087*
H16B0.03840.79920.71080.087*
H16C0.07330.85660.81500.087*
Cd10.26490 (3)1.074421 (18)0.75481 (2)0.03930 (11)
U11U22U33U12U13U23
N10.039 (2)0.0255 (15)0.0436 (18)0.0043 (14)0.0033 (15)0.0002 (14)
N20.044 (2)0.0340 (18)0.066 (2)0.0133 (15)−0.0060 (18)0.0078 (17)
N30.0365 (18)0.0242 (15)0.0410 (16)−0.0068 (13)0.0015 (14)−0.0021 (13)
N40.048 (2)0.0289 (17)0.0482 (19)−0.0128 (14)0.0016 (16)−0.0055 (14)
Br10.0653 (3)0.0460 (3)0.0713 (3)−0.0150 (2)0.0077 (2)0.0149 (2)
Br20.0746 (4)0.0398 (3)0.0745 (3)0.0205 (2)−0.0163 (3)−0.0179 (2)
C10.044 (2)0.027 (2)0.050 (2)−0.0007 (17)−0.010 (2)0.0000 (18)
C20.066 (3)0.039 (2)0.053 (3)−0.008 (2)−0.017 (2)0.006 (2)
C30.089 (4)0.058 (3)0.041 (2)−0.018 (3)0.003 (3)−0.003 (2)
C40.082 (4)0.057 (3)0.052 (3)0.005 (3)0.016 (3)−0.005 (2)
C50.058 (3)0.049 (3)0.053 (3)0.016 (2)0.002 (2)−0.003 (2)
C60.043 (2)0.0256 (19)0.041 (2)−0.0001 (16)0.0017 (18)−0.0006 (16)
C70.039 (2)0.030 (2)0.053 (2)0.0008 (17)0.0057 (19)−0.0037 (18)
C80.057 (3)0.050 (3)0.081 (3)0.006 (2)0.027 (3)−0.005 (2)
C90.037 (2)0.030 (2)0.0328 (19)0.0039 (16)0.0046 (16)−0.0025 (16)
C100.046 (3)0.033 (2)0.048 (2)−0.0044 (18)0.0004 (19)−0.0034 (18)
C110.068 (3)0.029 (2)0.053 (2)0.013 (2)−0.003 (2)−0.0004 (19)
C120.051 (3)0.054 (3)0.053 (3)0.013 (2)−0.010 (2)−0.006 (2)
C130.041 (3)0.053 (3)0.050 (2)−0.004 (2)−0.005 (2)−0.011 (2)
C140.041 (2)0.035 (2)0.0341 (19)−0.0006 (17)0.0046 (17)−0.0080 (16)
C150.051 (3)0.028 (2)0.038 (2)−0.0037 (17)0.0054 (19)0.0007 (16)
C160.082 (4)0.030 (2)0.059 (3)−0.008 (2)−0.014 (2)0.011 (2)
Cd10.04113 (19)0.02686 (16)0.04918 (18)0.00061 (12)−0.00430 (13)0.00266 (12)
N1—C71.336 (5)C4—H4A0.9300
N1—C61.390 (5)C5—C61.396 (6)
N1—Cd12.252 (3)C5—H50.9300
N2—C71.345 (5)C7—C81.475 (6)
N2—C11.370 (5)C8—H8A0.9600
N2—H20.8600C8—H8B0.9600
N3—C151.334 (4)C8—H8C0.9600
N3—C91.407 (5)C9—C101.393 (5)
N3—Cd12.250 (3)C9—C141.403 (5)
N4—C151.347 (5)C10—C111.387 (6)
N4—C141.392 (5)C10—H100.9300
N4—H40.8600C11—C121.394 (6)
Br1—Cd12.5372 (15)C11—H110.9300
Br2—Cd12.5869 (15)C12—C131.370 (6)
C1—C21.385 (6)C12—H120.9300
C1—C61.398 (5)C13—C141.386 (6)
C2—C31.381 (7)C13—H130.9300
C2—H2A0.9300C15—C161.492 (5)
C3—C41.401 (7)C16—H16A0.9600
C3—H30.9300C16—H16B0.9600
C4—C51.381 (6)C16—H16C0.9600
C7—N1—C6106.1 (3)C7—C8—H8C109.5
C7—N1—Cd1130.2 (3)H8A—C8—H8C109.5
C6—N1—Cd1123.1 (2)H8B—C8—H8C109.5
C7—N2—C1109.0 (3)C10—C9—C14120.6 (4)
C7—N2—H2125.5C10—C9—N3129.7 (4)
C1—N2—H2125.5C14—C9—N3109.7 (3)
C15—N3—C9105.3 (3)C11—C10—C9116.6 (4)
C15—N3—Cd1132.3 (3)C11—C10—H10121.7
C9—N3—Cd1122.3 (2)C9—C10—H10121.7
C15—N4—C14109.1 (3)C10—C11—C12121.9 (4)
C15—N4—H4125.4C10—C11—H11119.1
C14—N4—H4125.4C12—C11—H11119.1
N2—C1—C2132.2 (4)C13—C12—C11122.1 (4)
N2—C1—C6105.3 (3)C13—C12—H12119.0
C2—C1—C6122.5 (4)C11—C12—H12119.0
C3—C2—C1116.3 (4)C12—C13—C14116.5 (4)
C3—C2—H2A121.8C12—C13—H13121.8
C1—C2—H2A121.8C14—C13—H13121.8
C2—C3—C4122.2 (4)C13—C14—N4133.4 (4)
C2—C3—H3118.9C13—C14—C9122.3 (4)
C4—C3—H3118.9N4—C14—C9104.2 (3)
C5—C4—C3121.0 (5)N3—C15—N4111.7 (3)
C5—C4—H4A119.5N3—C15—C16125.5 (4)
C3—C4—H4A119.5N4—C15—C16122.8 (3)
C4—C5—C6117.5 (4)C15—C16—H16A109.5
C4—C5—H5121.2C15—C16—H16B109.5
C6—C5—H5121.2H16A—C16—H16B109.5
N1—C6—C5130.8 (4)C15—C16—H16C109.5
N1—C6—C1108.8 (3)H16A—C16—H16C109.5
C5—C6—C1120.4 (4)H16B—C16—H16C109.5
N1—C7—N2110.8 (3)N3—Cd1—N1106.04 (12)
N1—C7—C8125.9 (4)N3—Cd1—Br1109.95 (9)
N2—C7—C8123.3 (4)N1—Cd1—Br1117.77 (9)
C7—C8—H8A109.5N3—Cd1—Br2107.95 (9)
C7—C8—H8B109.5N1—Cd1—Br2105.40 (9)
H8A—C8—H8B109.5Br1—Cd1—Br2109.28 (2)
C7—N2—C1—C2178.9 (4)C9—C10—C11—C121.2 (6)
C7—N2—C1—C60.1 (4)C10—C11—C12—C13−2.5 (7)
N2—C1—C2—C3−177.2 (4)C11—C12—C13—C141.1 (6)
C6—C1—C2—C31.3 (6)C12—C13—C14—N4−179.9 (4)
C1—C2—C3—C40.1 (7)C12—C13—C14—C91.4 (6)
C2—C3—C4—C5−1.5 (7)C15—N4—C14—C13−177.7 (4)
C3—C4—C5—C61.5 (7)C15—N4—C14—C91.2 (4)
C7—N1—C6—C5−177.1 (4)C10—C9—C14—C13−2.7 (6)
Cd1—N1—C6—C511.3 (6)N3—C9—C14—C13177.7 (3)
C7—N1—C6—C10.9 (4)C10—C9—C14—N4178.3 (3)
Cd1—N1—C6—C1−170.7 (2)N3—C9—C14—N4−1.4 (4)
C4—C5—C6—N1177.6 (4)C9—N3—C15—N4−0.2 (4)
C4—C5—C6—C1−0.2 (6)Cd1—N3—C15—N4175.6 (2)
N2—C1—C6—N1−0.6 (4)C9—N3—C15—C16−179.7 (4)
C2—C1—C6—N1−179.5 (3)Cd1—N3—C15—C16−3.9 (6)
N2—C1—C6—C5177.6 (4)C14—N4—C15—N3−0.6 (4)
C2—C1—C6—C5−1.3 (6)C14—N4—C15—C16178.9 (4)
C6—N1—C7—N2−0.9 (4)C15—N3—Cd1—N1−4.6 (3)
Cd1—N1—C7—N2169.9 (2)C9—N3—Cd1—N1170.6 (2)
C6—N1—C7—C8177.7 (4)C15—N3—Cd1—Br1123.7 (3)
Cd1—N1—C7—C8−11.5 (6)C9—N3—Cd1—Br1−61.0 (3)
C1—N2—C7—N10.5 (4)C15—N3—Cd1—Br2−117.1 (3)
C1—N2—C7—C8−178.1 (4)C9—N3—Cd1—Br258.1 (3)
C15—N3—C9—C10−178.6 (4)C7—N1—Cd1—N3112.4 (3)
Cd1—N3—C9—C105.1 (5)C6—N1—Cd1—N3−78.2 (3)
C15—N3—C9—C141.0 (4)C7—N1—Cd1—Br1−11.1 (4)
Cd1—N3—C9—C14−175.3 (2)C6—N1—Cd1—Br1158.3 (2)
C14—C9—C10—C111.3 (5)C7—N1—Cd1—Br2−133.3 (3)
N3—C9—C10—C11−179.1 (3)C6—N1—Cd1—Br236.2 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2···Br1i0.862.883.495 (4)130
N4—H4···Br2ii0.862.773.563 (4)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2⋯Br1i 0.862.883.495 (4)130
N4—H4⋯Br2ii 0.862.773.563 (4)155

Symmetry codes: (i) ; (ii) .

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