Literature DB >> 24097415

Novel association of early onset hepatocellular carcinoma with transaldolase deficiency.

Charles A Leduc1, Elizabeth E Crouch, Ashley Wilson, Jay Lefkowitch, Mirjam M C Wamelink, Cornelis Jakobs, Gajja S Salomons, Xiaoyun Sun, Yufeng Shen, Wendy K Chung.   

Abstract

We evaluated a family with a 16-month-old boy with cirrhosis and hepatocellular carcinoma and his 30-month-old brother with cirrhosis. After failing to identify a diagnosis after routine metabolic evaluation, we utilized a combination of RNA-Seq and whole exome sequencing to identify a novel homozygous p.Ser171Phe Transaldolase (TALDO1) variant in the proband, his brother with cirrhosis, as well as a clinically asymptomatic older 8-year-old brother. Metabolite analysis and enzymatic testing of TALDO1 demonstrated elevated ribitol, sedoheptitol, and sedoheptulose-7P, and lack of activity of TALDO1 in the three children homozygous for the p.Ser171Phe mutation. Our findings expand the phenotype of transaldolase deficiency to include early onset hepatocellular carcinoma in humans and demonstrate that, even within the same family, individuals with the same homozygous mutation demonstrate a wide range of phenotypes.

Entities:  

Year:  2013        PMID: 24097415      PMCID: PMC3897795          DOI: 10.1007/8904_2013_254

Source DB:  PubMed          Journal:  JIMD Rep        ISSN: 2192-8304


  19 in total

1.  Analysis of polyols in urine by liquid chromatography-tandem mass spectrometry: a useful tool for recognition of inborn errors affecting polyol metabolism.

Authors:  M M C Wamelink; D E C Smith; C Jakobs; N M Verhoeven
Journal:  J Inherit Metab Dis       Date:  2005       Impact factor: 4.982

2.  Novel heterozygous mutations in TALDO1 gene causing transaldolase deficiency and early infantile liver failure.

Authors:  S Balasubramaniam; Mirjam M C Wamelink; Lock-Hock Ngu; Arni Talib; Gajja S Salomons; Cornelis Jakobs; Wee-Teik Keng
Journal:  J Pediatr Gastroenterol Nutr       Date:  2011-01       Impact factor: 2.839

3.  Quantification of sugar phosphate intermediates of the pentose phosphate pathway by LC-MS/MS: application to two new inherited defects of metabolism.

Authors:  Mirjam M C Wamelink; Eduard A Struys; Jojanneke H J Huck; Birthe Roos; Marjo S van der Knaap; Cornelis Jakobs; Nanda M Verhoeven
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2005-01-23       Impact factor: 3.205

4.  A newborn with severe liver failure, cardiomyopathy and transaldolase deficiency.

Authors:  N M Verhoeven; M Wallot; J H J Huck; O Dirsch; A Ballauf; U Neudorf; G S Salomons; M S van der Knaap; T Voit; C Jakobs
Journal:  J Inherit Metab Dis       Date:  2005       Impact factor: 4.982

5.  Transaldolase deficiency: a new cause of hydrops fetalis and neonatal multi-organ disease.

Authors:  Vassili Valayannopoulos; Nanda M Verhoeven; Karine Mention; Gajja S Salomons; Danièle Sommelet; Marie Gonzales; Guy Touati; Pascale de Lonlay; Cornelis Jakobs; Jean-Marie Saudubray
Journal:  J Pediatr       Date:  2006-11       Impact factor: 4.406

6.  Transaldolase deficiency: liver cirrhosis associated with a new inborn error in the pentose phosphate pathway.

Authors:  N M Verhoeven; J H Huck; B Roos; E A Struys; G S Salomons; A C Douwes; M S van der Knaap; C Jakobs
Journal:  Am J Hum Genet       Date:  2001-03-27       Impact factor: 11.025

7.  The Sequence Alignment/Map format and SAMtools.

Authors:  Heng Li; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor Marth; Goncalo Abecasis; Richard Durbin
Journal:  Bioinformatics       Date:  2009-06-08       Impact factor: 6.937

8.  Capillary gas chromatographic profiling of urinary, plasma and erythrocyte sugars and polyols as their trimethylsilyl derivatives, preceded by a simple and rapid prepurification method.

Authors:  G Jansen; F A Muskiet; H Schierbeek; R Berger; W van der Slik
Journal:  Clin Chim Acta       Date:  1986-06-30       Impact factor: 3.786

Review 9.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

10.  TopHat: discovering splice junctions with RNA-Seq.

Authors:  Cole Trapnell; Lior Pachter; Steven L Salzberg
Journal:  Bioinformatics       Date:  2009-03-16       Impact factor: 6.937

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  12 in total

1.  Long-Term Systematic Monitoring of Four Polish Transaldolase Deficient Patients.

Authors:  Patryk Lipiński; Joanna Pawłowska; Teresa Stradomska; Elżbieta Ciara; Irena Jankowska; Piotr Socha; Anna Tylki-Szymańska
Journal:  JIMD Rep       Date:  2018-01-03

2.  Transaldolase deficiency caused by the homozygous p.R192C mutation of the TALDO1 gene in four Emirati patients with considerable phenotypic variability.

Authors:  Aisha M Al-Shamsi; Salma Ben-Salem; Jozef Hertecant; Fatma Al-Jasmi
Journal:  Eur J Pediatr       Date:  2014-11-12       Impact factor: 3.183

3.  N-Acetylcysteine Therapy in an Infant with Transaldolase Deficiency Is Well Tolerated and Associated with Normalization of Alpha Fetoprotein Levels.

Authors:  Lance H Rodan; Gerard T Berry
Journal:  JIMD Rep       Date:  2016-04-30

4.  Transaldolase Deficiency: A New Case Expands the Phenotypic Spectrum.

Authors:  Ehud Banne; Vardiella Meiner; Avraham Shaag; Rachel Katz-Brull; Ayelet Gamliel; Stanley Korman; Smadar Horowitz Cederboim; Morasha Plesser Duvdevani; Ayala Frumkin; Amir Zilkha; Vadim Kapuller; Dan Arbell; Elite Cohen; Smadar Eventov-Friedman
Journal:  JIMD Rep       Date:  2015-08-04

5.  Mutations in TKT Are the Cause of a Syndrome Including Short Stature, Developmental Delay, and Congenital Heart Defects.

Authors:  Lia Boyle; Mirjam M C Wamelink; Gajja S Salomons; Birthe Roos; Ana Pop; Andrew Dauber; Vivian Hwa; Melissa Andrew; Jessica Douglas; Murray Feingold; Nancy Kramer; Sulagna Saitta; Kyle Retterer; Megan T Cho; Amber Begtrup; Kristin G Monaghan; Julia Wynn; Wendy K Chung
Journal:  Am J Hum Genet       Date:  2016-06-02       Impact factor: 11.025

6.  Investigation of pathogenic genes in peri-implantitis from implant clustering failure patients: a whole-exome sequencing pilot study.

Authors:  Soohyung Lee; Ji-Young Kim; Jihye Hwang; Sanguk Kim; Jae-Hoon Lee; Dong-Hoo Han
Journal:  PLoS One       Date:  2014-06-12       Impact factor: 3.240

7.  Transaldolase haploinsufficiency in subjects with acetaminophen-induced liver failure.

Authors:  Zachary Oaks; John Jimah; Craig C Grossman; Miguel Beckford; Ryan Kelly; Sanjay Banerjee; Brian Niland; Gabriella Miklossy; Zarife Kuloglu; Aydan Kansu; William Lee; Laszlo Szonyi; Katalin Banki; Andras Perl
Journal:  J Inherit Metab Dis       Date:  2020-01-01       Impact factor: 4.750

8.  Prenatal Diagnosis of Fetus With Transaldolase Deficiency Identifies Compound Heterozygous Variants: A Case Report.

Authors:  Jiaxin Xue; Jin Han; Xiaopeng Zhao; Li Zhen; Shanshan Mei; Zhiyang Hu; Xiuzhen Li
Journal:  Front Genet       Date:  2022-02-04       Impact factor: 4.599

Review 9.  The return of metabolism: biochemistry and physiology of the pentose phosphate pathway.

Authors:  Anna Stincone; Alessandro Prigione; Thorsten Cramer; Mirjam M C Wamelink; Kate Campbell; Eric Cheung; Viridiana Olin-Sandoval; Nana-Maria Grüning; Antje Krüger; Mohammad Tauqeer Alam; Markus A Keller; Michael Breitenbach; Kevin M Brindle; Joshua D Rabinowitz; Markus Ralser
Journal:  Biol Rev Camb Philos Soc       Date:  2014-09-22

10.  Putative markers for the detection of early-stage bladder cancer selected by urine metabolomics.

Authors:  Jia-You Lin; Bao-Rong Juo; Yu-Hsuan Yeh; Shu-Hsuan Fu; Yi-Ting Chen; Chien-Lun Chen; Kun-Pin Wu
Journal:  BMC Bioinformatics       Date:  2021-06-05       Impact factor: 3.169

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