Literature DB >> 24096102

A common mechanism underlying amyloid fibrillation and protein crystallization revealed by the effects of ultrasonication.

Hiroki Kitayama1, Yuichi Yoshimura, Masatomo So, Kazumasa Sakurai, Hisashi Yagi, Yuji Goto.   

Abstract

Protein crystals form in supersaturated solutions via a nucleation and growth mechanism. The amyloid fibrils of denatured proteins also form via a nucleation and growth mechanism. This similarity suggests that, although protein crystals and amyloid fibrils are distinct in their morphologies, both processes can be controlled in a similar manner. It has been established that ultrasonication markedly accelerates the formation of amyloid fibrils and simultaneously breaks them down into fragmented fibrils. In this study, we investigated the effects of ultrasonication on the crystallization of hen egg white lysozyme and glucose isomerase from Streptomyces rubiginosus. Protein crystallization was monitored by light scattering, tryptophan fluorescence, and light transmittance. Repeated ultrasonic irradiations caused the crystallization of lysozyme and glucose isomerase after cycles of irradiations. The size of the ultrasonication-induced crystals was small and homogeneous, and their numbers were larger than those obtained under quiescent conditions. Switching off ultrasonic irradiation when light scattering or tryptophan fluorescence began to change resulted in the formation of larger crystals due to the suppression of the further nucleation and fractures in preformed crystals. The results indicate that protein crystallization and amyloid fibrillation are explained on the basis of a common phase diagram in which ultrasonication accelerates the formation of crystals or crystal-like amyloid fibrils as well as fragmentation of preformed crystals or fibrils.
© 2013.

Entities:  

Keywords:  Crystallization; Nucleation and growth; Solubility; Supersaturation; Ultrasonication

Mesh:

Substances:

Year:  2013        PMID: 24096102     DOI: 10.1016/j.bbapap.2013.09.016

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  10 in total

1.  Sonocrystallization of conjugated polymers with ultrasound fields.

Authors:  Yuyin Xi; David S Li; Greg M Newbloom; Wesley K Tatum; Matthew O'Donnell; Christine K Luscombe; Lilo D Pozzo
Journal:  Soft Matter       Date:  2018-06-20       Impact factor: 3.679

2.  Heat of supersaturation-limited amyloid burst directly monitored by isothermal titration calorimetry.

Authors:  Tatsuya Ikenoue; Young-Ho Lee; József Kardos; Hisashi Yagi; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-21       Impact factor: 11.205

3.  A residue-specific shift in stability and amyloidogenicity of antibody variable domains.

Authors:  Cardine N Nokwe; Martin Zacharias; Hisashi Yagi; Manuel Hora; Bernd Reif; Yuji Goto; Johannes Buchner
Journal:  J Biol Chem       Date:  2014-08-05       Impact factor: 5.157

4.  High-throughput analysis of ultrasonication-forced amyloid fibrillation reveals the mechanism underlying the large fluctuation in the lag time.

Authors:  Ayaka Umemoto; Hisashi Yagi; Masatomo So; Yuji Goto
Journal:  J Biol Chem       Date:  2014-08-12       Impact factor: 5.157

5.  Supersaturation-limited and Unlimited Phase Transitions Compete to Produce the Pathway Complexity in Amyloid Fibrillation.

Authors:  Masayuki Adachi; Masatomo So; Kazumasa Sakurai; József Kardos; Yuji Goto
Journal:  J Biol Chem       Date:  2015-06-10       Impact factor: 5.157

6.  A small-angle scattering environment for in situ ultrasound studies.

Authors:  David S Li; Yi-Ting Lee; Yuyin Xi; Ivan Pelivanov; Matthew O'Donnell; Lilo D Pozzo
Journal:  Soft Matter       Date:  2018-06-27       Impact factor: 3.679

7.  Nucleus factory on cavitation bubble for amyloid β fibril.

Authors:  Kichitaro Nakajima; Hirotsugu Ogi; Kanta Adachi; Kentaro Noi; Masahiko Hirao; Hisashi Yagi; Yuji Goto
Journal:  Sci Rep       Date:  2016-02-25       Impact factor: 4.379

8.  Characterization of amyloid β fibril formation under microgravity conditions.

Authors:  Maho Yagi-Utsumi; Saeko Yanaka; Chihong Song; Tadashi Satoh; Chiaki Yamazaki; Haruo Kasahara; Toru Shimazu; Kazuyoshi Murata; Koichi Kato
Journal:  NPJ Microgravity       Date:  2020-06-12       Impact factor: 4.415

Review 9.  Supersaturation-Dependent Formation of Amyloid Fibrils.

Authors:  Yuji Goto; Masahiro Noji; Kichitaro Nakajima; Keiichi Yamaguchi
Journal:  Molecules       Date:  2022-07-19       Impact factor: 4.927

10.  Polyphenol-solubility alters amyloid fibril formation of α-synuclein.

Authors:  Masatomo So; Yuto Kimura; Keiichi Yamaguchi; Toshihiko Sugiki; Toshimichi Fujiwara; Cesar Aguirre; Kensuke Ikenaka; Hideki Mochizuki; Yasushi Kawata; Yuji Goto
Journal:  Protein Sci       Date:  2021-06-02       Impact factor: 6.993

  10 in total

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