Literature DB >> 24094393

Fast sampling of A-to-B protein global conformational transitions: from Galileo Galilei to Monte Carlo anisotropic network modeling.

Riccardo Baron1.   

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Year:  2013        PMID： 24094393      PMCID： PMC3791302          DOI： 10.1016/j.bpj.2013.08.021

Source DB:  PubMed          Journal:  Biophys J        ISSN： 0006-3495            Impact factor:   4.033


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  11 in total

1.  Anisotropy of fluctuation dynamics of proteins with an elastic network model.

Authors:  A R Atilgan; S R Durell; R L Jernigan; M C Demirel; O Keskin; I Bahar
Journal:  Biophys J       Date:  2001-01       Impact factor: 4.033

2.  Large Amplitude Elastic Motions in Proteins from a Single-Parameter, Atomic Analysis.

Authors: 
Journal:  Phys Rev Lett       Date:  1996-08-26       Impact factor: 9.161

3.  Large-amplitude nonlinear motions in proteins.

Authors: 
Journal:  Phys Rev Lett       Date:  1992-04-27       Impact factor: 9.161

4.  String method in collective variables: minimum free energy paths and isocommittor surfaces.

Authors:  Luca Maragliano; Alexander Fischer; Eric Vanden-Eijnden; Giovanni Ciccotti
Journal:  J Chem Phys       Date:  2006-07-14       Impact factor: 3.488

5.  Optimal partition and effective dynamics of complex networks.

Authors:  Weinan E; Tiejun Li; Eric Vanden-Eijnden
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-26       Impact factor: 11.205

Review 6.  Structural mechanisms for domain movements in proteins.

Authors:  M Gerstein; A M Lesk; C Chothia
Journal:  Biochemistry       Date:  1994-06-07       Impact factor: 3.162

7.  Essential dynamics of proteins.

Authors:  A Amadei; A B Linssen; H J Berendsen
Journal:  Proteins       Date:  1993-12

8.  Dynamics of a small globular protein in terms of low-frequency vibrational modes.

Authors:  N Go; T Noguti; T Nishikawa
Journal:  Proc Natl Acad Sci U S A       Date:  1983-06       Impact factor: 11.205

9.  Global transitions of proteins explored by a multiscale hybrid methodology: application to adenylate kinase.

Authors:  Mert Gur; Jeffry D Madura; Ivet Bahar
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

10.  Minimum free energy path of ligand-induced transition in adenylate kinase.

Authors:  Yasuhiro Matsunaga; Hiroshi Fujisaki; Tohru Terada; Tadaomi Furuta; Kei Moritsugu; Akinori Kidera
Journal:  PLoS Comput Biol       Date:  2012-06-07       Impact factor: 4.475
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  1 in total

Review 1.  Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.

Authors:  Tatiana Maximova; Ryan Moffatt; Buyong Ma; Ruth Nussinov; Amarda Shehu
Journal:  PLoS Comput Biol       Date:  2016-04-28       Impact factor: 4.475
  1 in total

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