Literature DB >> 24091688

Transcriptomics: advances and approaches.

Zhicheng Dong1, Yan Chen.   

Abstract

Transcriptomics is one of the most developed fields in the post-genomic era. Transcriptome is the complete set of RNA transcripts in a specific cell type or tissue at a certain developmental stage and/or under a specific physiological condition, including messenger RNA, transfer RNA, ribosomal RNA, and other non-coding RNAs. Transcriptomics focuses on the gene expression at the RNA level and offers the genome-wide information of gene structure and gene function in order to reveal the molecular mechanisms involved in specific biological processes. With the development of next-generation high-throughput sequencing technology, transcriptome analysis has been progressively improving our understanding of RNA-based gene regulatory network. Here, we discuss the concept, history, and especially the recent advances in this inspiring field of study.

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Year:  2013        PMID: 24091688     DOI: 10.1007/s11427-013-4557-2

Source DB:  PubMed          Journal:  Sci China Life Sci        ISSN: 1674-7305            Impact factor:   6.038


  14 in total

Review 1.  Algal omics: unlocking bioproduct diversity in algae cell factories.

Authors:  Michael T Guarnieri; Philip T Pienkos
Journal:  Photosynth Res       Date:  2014-03-14       Impact factor: 3.573

2.  Interacting adipose-derived stem cells and microvascular endothelial cells provide a beneficial milieu for soft tissue healing.

Authors:  Sophie Bachmann; Martina Jennewein; Monika Bubel; Silke Guthörl; Tim Pohlemann; Martin Oberringer
Journal:  Mol Biol Rep       Date:  2019-10-03       Impact factor: 2.316

3.  Investigating the impact of RNA integrity variation on the transcriptome of human leukemic cells.

Authors:  Suliman A Alsagaby
Journal:  3 Biotech       Date:  2022-07-07       Impact factor: 2.893

4.  Trypanosoma cruzi specific mRNA amplification by in vitro transcription improves parasite transcriptomics in host-parasite RNA mixtures.

Authors:  Rafael Luis Kessler; Daniela Parada Pavoni; Marco Aurelio Krieger; Christian Macagnan Probst
Journal:  BMC Genomics       Date:  2017-10-16       Impact factor: 3.969

Review 5.  Transcriptomics in Alzheimer's Disease: Aspects and Challenges.

Authors:  Eva Bagyinszky; Vo Van Giau; SeongSoo A An
Journal:  Int J Mol Sci       Date:  2020-05-15       Impact factor: 5.923

6.  Profiling Basal Forebrain Cholinergic Neurons Reveals a Molecular Basis for Vulnerability Within the Ts65Dn Model of Down Syndrome and Alzheimer's Disease.

Authors:  Melissa J Alldred; Sai C Penikalapati; Sang Han Lee; Adriana Heguy; Panos Roussos; Stephen D Ginsberg
Journal:  Mol Neurobiol       Date:  2021-07-14       Impact factor: 5.682

Review 7.  Genetic Engineering: A Promising Tool to Engender Physiological, Biochemical, and Molecular Stress Resilience in Green Microalgae.

Authors:  Freddy Guihéneuf; Asif Khan; Lam-Son P Tran
Journal:  Front Plant Sci       Date:  2016-03-31       Impact factor: 5.753

8.  Kinome Profiling of Regulatory T Cells: A Closer Look into a Complex Intracellular Network.

Authors:  Andrea Tuettenberg; Susanne A Hahn; Johanna Mazur; Aslihan Gerhold-Ay; Jetse Scholma; Iris Marg; Alexander Ulges; Kazuki Satoh; Tobias Bopp; Jos Joore; Helmut Jonuleit
Journal:  PLoS One       Date:  2016-02-16       Impact factor: 3.240

9.  De Novo Transcriptome Analysis of Medicinally Important Plantago ovata Using RNA-Seq.

Authors:  Shivanjali Kotwal; Sanjana Kaul; Pooja Sharma; Mehak Gupta; Rama Shankar; Mukesh Jain; Manoj K Dhar
Journal:  PLoS One       Date:  2016-03-04       Impact factor: 3.240

Review 10.  Current Status and Future Opportunities of Omics Tools in Mycotoxin Research.

Authors:  Manal Eshelli; M Mallique Qader; Ebtihaj J Jambi; Andrew S Hursthouse; Mostafa E Rateb
Journal:  Toxins (Basel)       Date:  2018-10-26       Impact factor: 4.546

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