Literature DB >> 24090975

Developmental cis-regulatory analysis of the cyclin D gene in the sea urchin Strongylocentrotus purpuratus.

Christopher M McCarty1, James A Coffman.   

Abstract

Cyclin D genes regulate the cell cycle, growth and differentiation in response to intercellular signaling. While the promoters of vertebrate cyclin D genes have been analyzed, the cis-regulatory sequences across an entire cyclin D locus have not. Doing so would increase understanding of how cyclin D genes respond to the regulatory states established by developmental gene regulatory networks, linking cell cycle and growth control to the ontogenetic program. Therefore, we conducted a cis-regulatory analysis on the cyclin D gene, SpcycD, of the sea urchin, Strongylocentrotus purpuratus, during embryogenesis, identifying upstream and intronic sequences, located within six defined regions bearing one or more cis-regulatory modules each.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  5′ UTR; 5′ untranslated region; CRM; Cyclin D; Development; GRN; Sea urchin embryo; Strongylocentrotus purpuratus; cis-Regulatory analysis; cis-regulatory module; gene regulatory network; hours post-fertilization; hpf

Mesh:

Substances:

Year:  2013        PMID: 24090975      PMCID: PMC3871186          DOI: 10.1016/j.bbrc.2013.09.094

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN: 0006-291X            Impact factor:   3.575


  50 in total

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Review 3.  A genomic regulatory network for development.

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4.  IKKalpha regulates mitogenic signaling through transcriptional induction of cyclin D1 via Tcf.

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5.  Involvement of the D-type cyclins in germ cell proliferation and differentiation in the mouse.

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6.  Cyclin D and cdk4 are required for normal development beyond the blastula stage in sea urchin embryos.

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7.  Cyclin D-cdk4 activity modulates the subnuclear localization and interaction of MEF2 with SRC-family coactivators during skeletal muscle differentiation.

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8.  Cluster-Buster: Finding dense clusters of motifs in DNA sequences.

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9.  Patchy interspecific sequence similarities efficiently identify positive cis-regulatory elements in the sea urchin.

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Review 10.  Transcriptional regulation of the cyclin D1 gene at a glance.

Authors:  Eric A Klein; Richard K Assoian
Journal:  J Cell Sci       Date:  2008-12-01       Impact factor: 5.285

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Review 2.  Bacterial artificial chromosomes as recombinant reporter constructs to investigate gene expression and regulation in echinoderms.

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