Literature DB >> 24087890

Importance of metal hydration on the selectivity of Mg2+ versus Ca2+ in magnesium ion channels.

Todor Dudev1, Carmay Lim.   

Abstract

Magnesium ion channels and transporters regulate the cellular concentrations of Mg(2+), which must be tightly controlled as imbalances have been associated with diseases such as osteoporosis, diabetes, and high blood pressure in humans. The channels and transporters allow the "native" Mg(2+) to be transported against a high background concentration of its major competitor, Ca(2+). Their selectivity filters (the narrowest part of the open pore) control metal ion selectivity. As the structures of Mg(2+) channels in an open conformation with bound Mg(2+) have not yet been solved, the key determinants of Mg(2+)/Ca(2+) selectivity in Mg(2+) ion channels remain elusive. Here, using density functional theory combined with continuum dielectric methods, we evaluated how the competition between Mg(2+) and Ca(2+) in model selectivity filters depends on the degree of metal hydration, which correlates with the pore size/rigidity as well as the composition and solvent accessibility of the selectivity filter. The key determinant of the selectivity for Mg(2+) over Ca(2+) in the Mg(2+) channel selectivity filter is a pore that is sufficiently large to accommodate hexahydrated Mg ions. In such wide pores, the hexahydrated metal ions interact indirectly with the protein ligands, hence metal desolvation and ligand-ligand steric repulsion become less important than Mg(2+)-water-protein interactions. These wide pores are Mg(2+)-selective because compared to Ca(2+) or Na(+) and K(+) monocations, Mg(2+) better polarizes the bound water molecules resulting in stronger Mg(2+)-water-protein interactions. Although both tetrameric and pentameric filters with pores that can accommodate hexahydrated metal ions could select Mg(2+) over Ca(2+), a bilayered pentameric filter lined with a ring of amides and a ring of carboxylates seems to best discriminate the "native" Mg(2+) from its key rival, Ca(2+). Our results are consistent with available experimental data and help to elucidate the selectivity filters in the Mg(2+)-selective TRPM6 and CorA channels.

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Year:  2013        PMID: 24087890     DOI: 10.1021/ja4087769

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  How the extra methylene group affects the ligation properties of Glu vs. Asp and Gln vs. Asn amino acids: a DFT/PCM study.

Authors:  Todor Dudev; Lyudmila Doudeva
Journal:  J Mol Model       Date:  2017-02-02       Impact factor: 1.810

2.  Competition between abiogenic Al3+ and native Mg2+, Fe2+ and Zn2+ ions in protein binding sites: implications for aluminum toxicity.

Authors:  Todor Dudev; Diana Cheshmedzhieva; Lyudmila Doudeva
Journal:  J Mol Model       Date:  2018-02-14       Impact factor: 1.810

3.  A Kirkwood-Buff derived force field for alkaline earth halide salts.

Authors:  Nawavi Naleem; Nikolaos Bentenitis; Paul E Smith
Journal:  J Chem Phys       Date:  2018-06-14       Impact factor: 3.488

4.  A repulsion mechanism explains magnesium permeation and selectivity in CorA.

Authors:  Olivier Dalmas; Walter Sandtner; David Medovoy; Ludivine Frezza; Francisco Bezanilla; Eduardo Perozo
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-10       Impact factor: 11.205

5.  Ion selectivity in the selectivity filters of acid-sensing ion channels.

Authors:  Todor Dudev; Carmay Lim
Journal:  Sci Rep       Date:  2015-01-19       Impact factor: 4.379

6.  Competition between Li+ and Na+ in sodium transporters and receptors: Which Na+-Binding sites are "therapeutic" Li+ targets?

Authors:  Todor Dudev; Karine Mazmanian; Carmay Lim
Journal:  Chem Sci       Date:  2018-04-02       Impact factor: 9.825

7.  Slowing Development Facilitates Arabidopsis mgt Mutants to Accumulate Enough Magnesium for Pollen Formation and Fertility Restoration.

Authors:  Xiao-Feng Xu; Xue-Xue Qian; Kai-Qi Wang; Ya-Hui Yu; Yu-Yi Guo; Xin Zhao; Bo Wang; Nai-Ying Yang; Ji-Rong Huang; Zhong-Nan Yang
Journal:  Front Plant Sci       Date:  2021-01-20       Impact factor: 5.753

8.  Chelated Magnesium Logic Gate Regulates Riboswitch Pseudoknot Formation.

Authors:  Raju Sarkar; Akhilesh Jaiswar; Scott P Hennelly; José N Onuchic; Karissa Y Sanbonmatsu; Susmita Roy
Journal:  J Phys Chem B       Date:  2021-06-09       Impact factor: 2.991

9.  Selectivity Mechanism of the Voltage-gated Proton Channel, HV1.

Authors:  Todor Dudev; Boris Musset; Deri Morgan; Vladimir V Cherny; Susan M E Smith; Karine Mazmanian; Thomas E DeCoursey; Carmay Lim
Journal:  Sci Rep       Date:  2015-05-08       Impact factor: 4.379

10.  The structural basis of proton driven zinc transport by ZntB.

Authors:  Cornelius Gati; Artem Stetsenko; Dirk J Slotboom; Sjors H W Scheres; Albert Guskov
Journal:  Nat Commun       Date:  2017-11-03       Impact factor: 14.919

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