Literature DB >> 24078859

BAYESIAN INFERENCE AND MODEL CHOICE IN A HIDDEN STOCHASTIC TWO-COMPARTMENT MODEL OF HEMATOPOIETIC STEM CELL FATE DECISIONS.

Youyi Fong1, Peter Guttorp, Janis Abkowitz.   

Abstract

Despite rapid advances in experimental cell biology, the in vivo behavior of hematopoietic stem cells (HSC) cannot be directly observed and measured. Previously we modeled feline hematopoiesis using a two-compartment hidden Markov process that had birth and emigration events in the first compartment. Here we perform Bayesian statistical inference on models which contain two additional events in the first compartment in order to determine if HSC fate decisions are linked to cell division or occur independently. Pareto Optimal Model Assessment approach is used to cross check the estimates from Bayesian inference. Our results show that HSC must divide symmetrically (i.e., produce two HSC daughter cells) in order to maintain hematopoiesis. We then demonstrate that the augmented model that adds asymmetric division events provides a better fit to the competitive transplantation data, and we thus provide evidence that HSC fate determination in vivo occurs both in association with cell division and at a separate point in time. Last we show that assuming each cat has a unique set of parameters leads to either a significant decrease or a nonsignificant increase in model fit, suggesting that the kinetic parameters for HSC are not unique attributes of individual animals, but shared within a species.

Entities:  

Keywords:  Stochastic two-compartment model; asymmetric division; hematopoiesis; hidden Markov models; reversible jump MCMC; stem cell

Year:  2009        PMID: 24078859      PMCID: PMC3783006          DOI: 10.1214/09-AOAS269

Source DB:  PubMed          Journal:  Ann Appl Stat        ISSN: 1932-6157            Impact factor:   2.083


  19 in total

1.  Bayesian inference in a hidden stochastic two-compartment model for feline hematopoiesis.

Authors:  D Golinelli; P Guttorp; J A Abkowitz
Journal:  Math Med Biol       Date:  2006-03-27       Impact factor: 1.854

Review 2.  Mechanisms of asymmetric stem cell division.

Authors:  Juergen A Knoblich
Journal:  Cell       Date:  2008-02-22       Impact factor: 41.582

3.  Imaging hematopoietic precursor division in real time.

Authors:  Mingfu Wu; Hyog Young Kwon; Frederique Rattis; Jordan Blum; Chen Zhao; Rina Ashkenazi; Trachette L Jackson; Nicholas Gaiano; Tim Oliver; Tannishtha Reya
Journal:  Cell Stem Cell       Date:  2007-11       Impact factor: 24.633

4.  A stochastic model for haematopoiesis in cats.

Authors:  P Guttorp; M A Newton; J L Abkowitz
Journal:  IMA J Math Appl Med Biol       Date:  1990

5.  The replication rate of human hematopoietic stem cells in vivo.

Authors:  Sandra N Catlin; Lambert Busque; Rosemary E Gale; Peter Guttorp; Janis L Abkowitz
Journal:  Blood       Date:  2011-02-22       Impact factor: 22.113

6.  The relationship between the spleen colony-forming cell and the haemopoietic stem cell.

Authors:  R Schofield
Journal:  Blood Cells       Date:  1978

7.  Estimating human hematopoietic stem cell kinetics using granulocyte telomere lengths.

Authors:  Bryan E Shepherd; Peter Guttorp; Peter M Lansdorp; Janis L Abkowitz
Journal:  Exp Hematol       Date:  2004-11       Impact factor: 3.084

8.  Clonal evolution following chemotherapy-induced stem cell depletion in cats heterozygous for glucose-6-phosphate dehydrogenase.

Authors:  J L Abkowitz; R M Ott; R D Holly; J W Adamson
Journal:  Blood       Date:  1988-06       Impact factor: 22.113

9.  Efficient transplantation via antibody-based clearance of hematopoietic stem cell niches.

Authors:  Agnieszka Czechowicz; Daniel Kraft; Irving L Weissman; Deepta Bhattacharya
Journal:  Science       Date:  2007-11-23       Impact factor: 47.728

10.  Evidence that hematopoiesis may be a stochastic process in vivo.

Authors:  J L Abkowitz; S N Catlin; P Guttorp
Journal:  Nat Med       Date:  1996-02       Impact factor: 53.440

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  4 in total

1.  The replication rate of human hematopoietic stem cells in vivo.

Authors:  Sandra N Catlin; Lambert Busque; Rosemary E Gale; Peter Guttorp; Janis L Abkowitz
Journal:  Blood       Date:  2011-02-22       Impact factor: 22.113

2.  Visualizing hematopoiesis as a stochastic process.

Authors:  Jason Xu; Yiwen Wang; Peter Guttorp; Janis L Abkowitz
Journal:  Blood Adv       Date:  2018-10-23

3.  Efficient Transition Probability Computation for Continuous-Time Branching Processes via Compressed Sensing.

Authors:  Jason Xu; Vladimir N Minin
Journal:  Uncertain Artif Intell       Date:  2015-07

4.  Optimal experimental design for mathematical models of haematopoiesis.

Authors:  Luis Martinez Lomeli; Abdon Iniguez; Prasanthi Tata; Nilamani Jena; Zhong-Ying Liu; Richard Van Etten; Arthur D Lander; Babak Shahbaba; John S Lowengrub; Vladimir N Minin
Journal:  J R Soc Interface       Date:  2021-01-27       Impact factor: 4.118

  4 in total

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