Literature DB >> 24077893

High‑efficiency system for construction and evaluation of customized TALENs for silkworm genome editing.

Feng Wang, Sanyuan Ma, Hanfu Xu, Jianping Duan, Yuancheng Wang, Huan Ding, Yuanyuan Liu, Xiaogang Wang, Ping Zhao, Qingyou Xia.   

Abstract

Transcription activator-like effector nuclease (TALEN) possesses the characteristics of ease design and precise DNA targeting. In the silkworm Bombyx mori, TALEN has been successfully used to knockout an endogenous Bombyx gene, and shown the huge potential in functional genes research and improvement of the economical characteristics of silkworm. Thus, there is an urgent need to develop an applicable system that permits the efficient construction of customized TALEN with high activity that could efficiently induce the hereditable mutagenesis in the silkworm. In this study, we constructed an efficient assembly and evaluation system of the customized TALEN especiallly for silkworm genome editing by combination of a modified Golden Gate ligation strategy, a luciferase (LUC) reporter system in insect cell culture for binding activity and a surveyor nuclease assay system in silkworm embryos for cleavage efficiency. We showed the reliability of this system by assembling a pair of TALENs targeting a silkworm genome locus and assaying their binding and cleavage activities. The assembly strategy was convenient and efficient which allows the rapid construction of customized TALEN in less than 1 week, and the evaluation system was reliable and necessary for screening of the customized TALEN pair with high binding and cleavage activities. The results showed this system is a reliable and efficient tool for the construction of customized TALEN with high activity for gene targeting of silkworm, and will contribute to the wide application of TALEN technology in the functional gene research of silkworm.

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Year:  2013        PMID: 24077893     DOI: 10.1007/s00438-013-0782-4

Source DB:  PubMed          Journal:  Mol Genet Genomics        ISSN: 1617-4623            Impact factor:   3.291


  31 in total

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Authors:  Malcolm J Fraser
Journal:  Annu Rev Entomol       Date:  2012       Impact factor: 19.686

2.  A simple cipher governs DNA recognition by TAL effectors.

Authors:  Matthew J Moscou; Adam J Bogdanove
Journal:  Science       Date:  2009-12-11       Impact factor: 47.728

3.  An optimized sericin-1 expression system for mass-producing recombinant proteins in the middle silk glands of transgenic silkworms.

Authors:  Feng Wang; Hanfu Xu; Lin Yuan; Sanyuan Ma; Yuancheng Wang; Xiaoli Duan; Jianping Duan; Zhonghuai Xiang; Qingyou Xia
Journal:  Transgenic Res       Date:  2013-02-23       Impact factor: 2.788

4.  A draft sequence for the genome of the domesticated silkworm (Bombyx mori).

Authors:  Qingyou Xia; Zeyang Zhou; Cheng Lu; Daojun Cheng; Fangyin Dai; Bin Li; Ping Zhao; Xingfu Zha; Tingcai Cheng; Chunli Chai; Guoqing Pan; Jinshan Xu; Chun Liu; Ying Lin; Jifeng Qian; Yong Hou; Zhengli Wu; Guanrong Li; Minhui Pan; Chunfeng Li; Yihong Shen; Xiqian Lan; Lianwei Yuan; Tian Li; Hanfu Xu; Guangwei Yang; Yongji Wan; Yong Zhu; Maode Yu; Weide Shen; Dayang Wu; Zhonghuai Xiang; Jun Yu; Jun Wang; Ruiqiang Li; Jianping Shi; Heng Li; Guangyuan Li; Jianning Su; Xiaoling Wang; Guoqing Li; Zengjin Zhang; Qingfa Wu; Jun Li; Qingpeng Zhang; Ning Wei; Jianzhe Xu; Haibo Sun; Le Dong; Dongyuan Liu; Shengli Zhao; Xiaolan Zhao; Qingshun Meng; Fengdi Lan; Xiangang Huang; Yuanzhe Li; Lin Fang; Changfeng Li; Dawei Li; Yongqiao Sun; Zhenpeng Zhang; Zheng Yang; Yanqing Huang; Yan Xi; Qiuhui Qi; Dandan He; Haiyan Huang; Xiaowei Zhang; Zhiqiang Wang; Wenjie Li; Yuzhu Cao; Yingpu Yu; Hong Yu; Jinhong Li; Jiehua Ye; Huan Chen; Yan Zhou; Bin Liu; Jing Wang; Jia Ye; Hai Ji; Shengting Li; Peixiang Ni; Jianguo Zhang; Yong Zhang; Hongkun Zheng; Bingyu Mao; Wen Wang; Chen Ye; Songgang Li; Jian Wang; Gane Ka-Shu Wong; Huanming Yang
Journal:  Science       Date:  2004-12-10       Impact factor: 47.728

5.  Germline transformation of the silkworm Bombyx mori L. using a piggyBac transposon-derived vector.

Authors:  T Tamura; C Thibert; C Royer; T Kanda; E Abraham; M Kamba; N Komoto; J L Thomas; B Mauchamp; G Chavancy; P Shirk; M Fraser; J C Prudhomme; P Couble; T Toshiki; T Chantal; R Corinne; K Toshio; A Eappen; K Mari; K Natuo; T Jean-Luc; M Bernard; C Gérard; S Paul; F Malcolm; P Jean-Claude; C Pierre
Journal:  Nat Biotechnol       Date:  2000-01       Impact factor: 54.908

6.  Efficient disruption of endogenous Bombyx gene by TAL effector nucleases.

Authors:  Suresh Sajwan; Yoko Takasu; Toshiki Tamura; Keiro Uchino; Hideki Sezutsu; Michal Zurovec
Journal:  Insect Biochem Mol Biol       Date:  2012-11-08       Impact factor: 4.714

Review 7.  The genetics and genomics of the silkworm, Bombyx mori.

Authors:  Marian R Goldsmith; Toru Shimada; Hiroaki Abe
Journal:  Annu Rev Entomol       Date:  2005       Impact factor: 19.686

8.  Iterative capped assembly: rapid and scalable synthesis of repeat-module DNA such as TAL effectors from individual monomers.

Authors:  Adrian W Briggs; Xavier Rios; Raj Chari; Luhan Yang; Feng Zhang; Prashant Mali; George M Church
Journal:  Nucleic Acids Res       Date:  2012-06-26       Impact factor: 16.971

9.  FLASH assembly of TALENs for high-throughput genome editing.

Authors:  Deepak Reyon; Shengdar Q Tsai; Cyd Khayter; Jennifer A Foden; Jeffry D Sander; J Keith Joung
Journal:  Nat Biotechnol       Date:  2012-05       Impact factor: 54.908

10.  Targeted gene disruption in somatic zebrafish cells using engineered TALENs.

Authors:  Jeffry D Sander; Lindsay Cade; Cyd Khayter; Deepak Reyon; Randall T Peterson; J Keith Joung; Jing-Ruey J Yeh
Journal:  Nat Biotechnol       Date:  2011-08-05       Impact factor: 54.908

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  7 in total

1.  Remobilizing deleted piggyBac vector post-integration for transgene stability in silkworm.

Authors:  Feng Wang; Riyuan Wang; Yuancheng Wang; Hanfu Xu; Lin Yuan; Huan Ding; Sanyuan Ma; You Zhou; Ping Zhao; Qingyou Xia
Journal:  Mol Genet Genomics       Date:  2015-01-15       Impact factor: 3.291

Review 2.  Advanced technologies for genetically manipulating the silkworm Bombyx mori, a model Lepidopteran insect.

Authors:  Hanfu Xu; David A O'Brochta
Journal:  Proc Biol Sci       Date:  2015-07-07       Impact factor: 5.349

3.  Targeted mutagenesis of aryl hydrocarbon receptor 2a and 2b genes in Atlantic killifish (Fundulus heteroclitus).

Authors:  Neelakanteswar Aluru; Sibel I Karchner; Diana G Franks; Diane Nacci; Denise Champlin; Mark E Hahn
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4.  Superoxide dismutases, SOD1 and SOD2, play a distinct role in the fat body during pupation in silkworm Bombyx mori.

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Journal:  PLoS One       Date:  2015-02-25       Impact factor: 3.240

5.  Identification of functional enolase genes of the silkworm Bombyx mori from public databases with a combination of dry and wet bench processes.

Authors:  Akira Kikuchi; Takeru Nakazato; Katsuhiko Ito; Yosui Nojima; Takeshi Yokoyama; Kikuo Iwabuchi; Hidemasa Bono; Atsushi Toyoda; Asao Fujiyama; Ryoichi Sato; Hiroko Tabunoki
Journal:  BMC Genomics       Date:  2017-01-13       Impact factor: 3.969

6.  Genomic Access to Monarch Migration Using TALEN and CRISPR/Cas9-Mediated Targeted Mutagenesis.

Authors:  Matthew J Markert; Ying Zhang; Metewo S Enuameh; Steven M Reppert; Scot A Wolfe; Christine Merlin
Journal:  G3 (Bethesda)       Date:  2016-04-07       Impact factor: 3.154

7.  2A self-cleaving peptide-based multi-gene expression system in the silkworm Bombyx mori.

Authors:  Yuancheng Wang; Feng Wang; Riyuan Wang; Ping Zhao; Qingyou Xia
Journal:  Sci Rep       Date:  2015-11-05       Impact factor: 4.379

  7 in total

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