Literature DB >> 24077718

DNA double-strand break repair at--15{degrees}C.

Markus Dieser1, John R Battista, Brent C Christner.   

Abstract

The survival of microorganisms in ancient glacial ice and permafrost has been ascribed to their ability to persist in a dormant, metabolically inert state. An alternative possibility, supported by experimental data, is that microorganisms in frozen matrices are able to sustain a level of metabolic function that is sufficient for cellular repair and maintenance. To examine this experimentally, frozen populations of Psychrobacter arcticus 273-4 were exposed to ionizing radiation (IR) to simulate the damage incurred from natural background IR sources in the permafrost environment from over ∼225 kiloyears (ky). High-molecular-weight DNA was fragmented by exposure to 450 Gy of IR, which introduced an average of 16 double-strand breaks (DSBs) per chromosome. During incubation at -15°C for 505 days, P. arcticus repaired DNA DSBs in the absence of net growth. Based on the time frame for the assembly of genomic fragments by P. arcticus, the rate of DNA DSB repair was estimated at 7 to 10 DSBs year(-1) under the conditions tested. Our results provide direct evidence for the repair of DNA lesions, extending the range of complex biochemical reactions known to occur in bacteria at frozen temperatures. Provided that sufficient energy and nutrient sources are available, a functional DNA repair mechanism would allow cells to maintain genome integrity and augment microbial survival in icy terrestrial or extraterrestrial environments.

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Year:  2013        PMID: 24077718      PMCID: PMC3837829          DOI: 10.1128/AEM.02845-13

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  35 in total

1.  Genes that move the window of viability of life: lessons from bacteria thriving at the cold extreme: mesophiles can be turned into extremophiles by substituting essential genes.

Authors:  Víctor de Lorenzo
Journal:  Bioessays       Date:  2011-01       Impact factor: 4.345

2.  Implications of subzero metabolic activity on long-term microbial survival in terrestrial and extraterrestrial permafrost.

Authors:  Pierre Amato; Shawn M Doyle; John R Battista; Brent C Christner
Journal:  Astrobiology       Date:  2010-10       Impact factor: 4.335

3.  Psychromonas ingrahamii sp. nov., a novel gas vacuolate, psychrophilic bacterium isolated from Arctic polar sea ice.

Authors:  Ann J Auman; Jennifer L Breezee; John J Gosink; Peter Kämpfer; James T Staley
Journal:  Int J Syst Evol Microbiol       Date:  2006-05       Impact factor: 2.747

4.  Psychrobacter arcticus 273-4 uses resource efficiency and molecular motion adaptations for subzero temperature growth.

Authors:  Peter W Bergholz; Corien Bakermans; James M Tiedje
Journal:  J Bacteriol       Date:  2009-01-23       Impact factor: 3.490

Review 5.  Mechanisms of recombination: lessons from E. coli.

Authors:  Nicole S Persky; Susan T Lovett
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Nov-Dec       Impact factor: 8.250

6.  Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost.

Authors:  Corien Bakermans; Héctor L Ayala-Del-Río; Monica A Ponder; Tatiana Vishnivetskaya; David Gilichinsky; Michael F Thomashow; James M Tiedje
Journal:  Int J Syst Evol Microbiol       Date:  2006-06       Impact factor: 2.747

7.  Carbon and nitrogen assimilation in deep subseafloor microbial cells.

Authors:  Yuki Morono; Takeshi Terada; Manabu Nishizawa; Motoo Ito; François Hillion; Naoto Takahata; Yuji Sano; Fumio Inagaki
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-10       Impact factor: 11.205

8.  The genome sequence of Psychrobacter arcticus 273-4, a psychroactive Siberian permafrost bacterium, reveals mechanisms for adaptation to low-temperature growth.

Authors:  Héctor L Ayala-del-Río; Patrick S Chain; Joseph J Grzymski; Monica A Ponder; Natalia Ivanova; Peter W Bergholz; Genevive Di Bartolo; Loren Hauser; Miriam Land; Corien Bakermans; Debora Rodrigues; Joel Klappenbach; Dan Zarka; Frank Larimer; Paul Richardson; Alison Murray; Michael Thomashow; James M Tiedje
Journal:  Appl Environ Microbiol       Date:  2010-02-12       Impact factor: 4.792

9.  An end-joining repair mechanism in Escherichia coli.

Authors:  Romain Chayot; Benjamin Montagne; Didier Mazel; Miria Ricchetti
Journal:  Proc Natl Acad Sci U S A       Date:  2010-01-19       Impact factor: 11.205

10.  Metabolic activity of Siberian permafrost isolates, Psychrobacter arcticus and Exiguobacterium sibiricum, at low water activities.

Authors:  Monica A Ponder; Michael F Thomashow; James M Tiedje
Journal:  Extremophiles       Date:  2008-03-12       Impact factor: 2.395

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  8 in total

1.  Predominance of Anaerobic, Spore-Forming Bacteria in Metabolically Active Microbial Communities from Ancient Siberian Permafrost.

Authors:  Renxing Liang; Maggie Lau; Tatiana Vishnivetskaya; Karen G Lloyd; Wei Wang; Jessica Wiggins; Jennifer Miller; Susan Pfiffner; Elizaveta M Rivkina; Tullis C Onstott
Journal:  Appl Environ Microbiol       Date:  2019-07-18       Impact factor: 4.792

2.  100 kGy gamma-affected microbial communities within the ancient Arctic permafrost under simulated Martian conditions.

Authors:  Vladimir S Cheptsov; Elena A Vorobyova; Natalia A Manucharova; Mikhail V Gorlenko; Anatoli K Pavlov; Maria A Vdovina; Vladimir N Lomasov; Sergey A Bulat
Journal:  Extremophiles       Date:  2017-10-09       Impact factor: 2.395

3.  HREM, RNAseq and Cell Cycle Analyses Reveal the Role of the G2/M-Regulatory Protein, WEE1, on the Survivability of Chicken Embryos during Diapause.

Authors:  Narayan Pokhrel; Olga Genin; Dalit Sela-Donenfeld; Yuval Cinnamon
Journal:  Biomedicines       Date:  2022-03-27

4.  Genomic reconstruction of fossil and living microorganisms in ancient Siberian permafrost.

Authors:  Renxing Liang; Zhou Li; Maggie C Y Lau Vetter; Tatiana A Vishnivetskaya; Oksana G Zanina; Karen G Lloyd; Susan M Pfiffner; Elizaveta M Rivkina; Wei Wang; Jessica Wiggins; Jennifer Miller; Robert L Hettich; Tullis C Onstott
Journal:  Microbiome       Date:  2021-05-17       Impact factor: 14.650

5.  The transcriptional response of microbial communities in thawing Alaskan permafrost soils.

Authors:  Marco J L Coolen; William D Orsi
Journal:  Front Microbiol       Date:  2015-03-16       Impact factor: 5.640

Review 6.  Evolution with a seed bank: The population genetic consequences of microbial dormancy.

Authors:  William R Shoemaker; Jay T Lennon
Journal:  Evol Appl       Date:  2018-01-02       Impact factor: 5.183

Review 7.  Glaciers and Ice Sheets As Analog Environments of Potentially Habitable Icy Worlds.

Authors:  Eva Garcia-Lopez; Cristina Cid
Journal:  Front Microbiol       Date:  2017-07-28       Impact factor: 5.640

8.  Microbial survival strategies in ancient permafrost: insights from metagenomics.

Authors:  Rachel Mackelprang; Alexander Burkert; Monica Haw; Tara Mahendrarajah; Christopher H Conaway; Thomas A Douglas; Mark P Waldrop
Journal:  ISME J       Date:  2017-07-11       Impact factor: 10.302

  8 in total

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