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Authors: Yong Zhang; Tao Liu; Clifford A Meyer; Jérôme Eeckhoute; David S Johnson; Bradley E Bernstein; Chad Nusbaum; Richard M Myers; Myles Brown; Wei Li; X Shirley Liu
Journal: Genome Biol Date: 2008-09-17 Impact factor: 13.583

5 in total

9 in total

Review 1. Stems cells, big data and compendium-based analyses for identifying cell types, signalling pathways and gene regulatory networks.

Authors: Md Humayun Kabir; Michael D O'Connor
Journal: Biophys Rev Date: 2019-01-25

2. ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.

Authors: Stefan H Lelieveld; Judith Schütte; Maurits J J Dijkstra; Punto Bawono; Sarah J Kinston; Berthold Göttgens; Jaap Heringa; Nicola Bonzanni
Journal: Nucleic Acids Res Date: 2015-12-31 Impact factor: 16.971

3. DNMT3A Loss Drives Enhancer Hypomethylation in FLT3-ITD-Associated Leukemias.

Authors: Liubin Yang; Benjamin Rodriguez; Allison Mayle; Hyun Jung Park; Xueqiu Lin; Min Luo; Mira Jeong; Choladda V Curry; Sang-Bae Kim; David Ruau; Xiaotian Zhang; Ting Zhou; Michael Zhou; Vivienne I Rebel; Grant A Challen; Berthold Gottgens; Ju-Seog Lee; Rachel Rau; Wei Li; Margaret A Goodell
Journal: Cancer Cell Date: 2016-06-13 Impact factor: 31.743

4. CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities.

Authors: Manuel Sánchez-Castillo; David Ruau; Adam C Wilkinson; Felicia S L Ng; Rebecca Hannah; Evangelia Diamanti; Patrick Lombard; Nicola K Wilson; Berthold Gottgens
Journal: Nucleic Acids Res Date: 2014-09-30 Impact factor: 19.160

5. A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles.

Authors: Felicia S L Ng; David Ruau; Lorenz Wernisch; Berthold Göttgens
Journal: Brief Bioinform Date: 2018-01-01 Impact factor: 11.622

Building an ENCODE-style data compendium on a shoestring.

1. Creation and implications of a phenome-genome network.

2. The end of "small science"?

3. An integrated encyclopedia of DNA elements in the human genome.

4. Gene set control analysis predicts hematopoietic control mechanisms from genome-wide transcription factor binding data.

5. Model-based analysis of ChIP-Seq (MACS).

Review 1. Stems cells, big data and compendium-based analyses for identifying cell types, signalling pathways and gene regulatory networks.

2. ConBind: motif-aware cross-species alignment for the identification of functional transcription factor binding sites.

3. DNMT3A Loss Drives Enhancer Hypomethylation in FLT3-ITD-Associated Leukemias.

4. CODEX: a next-generation sequencing experiment database for the haematopoietic and embryonic stem cell communities.

5. A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles.

6. Constrained transcription factor spacing is prevalent and important for transcriptional control of mouse blood cells.

Review 7. Hematopoietic transcriptional mechanisms: from locus-specific to genome-wide vantage points.

Review 8. Transcriptional network control of normal and leukaemic haematopoiesis.

9. SBR-Blood: systems biology repository for hematopoietic cells.