Literature DB >> 24074786

From genome to bedside: are we lost in translation?

Daniel F Hayes1.   

Abstract

The preceding decade has seen a remarkable technical explosion resulting in an entirely new field designated as "omics". A committee convened by the United States Institute of Medicine (IOM) has defined omics as "characterization of global sets of biological molecules such as DNAs, RNAs, proteins, and metabolites". The IOM report has established a roadmap for translating a newly discovered signature that emerges from an omics-based exploratory study to a true, analytically valid test that has both clinical validity and clinical utility for a specific intended use. This roadmap requires a multi-disciplinary team with expertise in the technical aspects of high-throughput assay development, bioinformatics, clinical test development, and clinical research and statistics. The investigative team should follow one of the pathways laid out by the IOM committee to establish clinical utility of an analytically validated omics-based test, and therefore acceptance by regulatory and guideline bodies: Prospective retrospective studies, or prospective studies in which the omics-based test is the primary objective of the trial itself. Although developed for omics-based tests, these concepts are applicable to any diagnostic test used to direct care of patients with cancer. These pathways are rigorous, and therefore not easily accomplished. However, if we are to apply these tests to direct management of our patients, we must approach the science of biomarker development with the same rigor that is used for therapeutic agent assessment. A "Bad Tumor Marker Is as Bad as a Bad Drug".
Copyright © 2013 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Omics-based tests; Tumor biomarker tests

Mesh:

Substances:

Year:  2013        PMID: 24074786     DOI: 10.1016/j.breast.2013.07.004

Source DB:  PubMed          Journal:  Breast        ISSN: 0960-9776            Impact factor:   4.380


  6 in total

1.  An international study to increase concordance in Ki67 scoring.

Authors:  Mei-Yin C Polley; Samuel C Y Leung; Dongxia Gao; Mauro G Mastropasqua; Lila A Zabaglo; John M S Bartlett; Lisa M McShane; Rebecca A Enos; Sunil S Badve; Anita L Bane; Signe Borgquist; Susan Fineberg; Ming-Gang Lin; Allen M Gown; Dorthe Grabau; Carolina Gutierrez; Judith C Hugh; Takuya Moriya; Yasuyo Ohi; C Kent Osborne; Frédérique M Penault-Llorca; Tammy Piper; Peggy L Porter; Takashi Sakatani; Roberto Salgado; Jane Starczynski; Anne-Vibeke Lænkholm; Giuseppe Viale; Mitch Dowsett; Daniel F Hayes; Torsten O Nielsen
Journal:  Mod Pathol       Date:  2015-02-20       Impact factor: 7.842

Review 2.  Translational science matters: forging partnerships between biomedical and behavioral science to advance the public's health.

Authors:  George A Mensah; Susan M Czajkowski
Journal:  Transl Behav Med       Date:  2018-09-08       Impact factor: 3.046

Review 3.  Methods for Stratification and Validation Cohorts: A Scoping Review.

Authors:  Teresa Torres Moral; Albert Sanchez-Niubo; Anna Monistrol-Mula; Chiara Gerardi; Rita Banzi; Paula Garcia; Jacques Demotes-Mainard; Josep Maria Haro
Journal:  J Pers Med       Date:  2022-04-26

4.  Translational Metabolomics: Current Challenges and Future Opportunities.

Authors:  Farhana R Pinu; Seyed Ali Goldansaz; Jacob Jaine
Journal:  Metabolites       Date:  2019-06-06

5.  FDA-led consortium studies advance quality control of targeted next generation sequencing assays for precision oncology.

Authors:  Dan Li; Rebecca Kusko; Baitang Ning; Weida Tong; Donald J Johann; Joshua Xu
Journal:  Precis Cancer Med       Date:  2021-12-30

6.  Personalizing the treatment of women with early breast cancer: highlights of the St Gallen International Expert Consensus on the Primary Therapy of Early Breast Cancer 2013.

Authors:  A Goldhirsch; E P Winer; A S Coates; R D Gelber; M Piccart-Gebhart; B Thürlimann; H-J Senn
Journal:  Ann Oncol       Date:  2013-08-04       Impact factor: 32.976

  6 in total

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