| Literature DB >> 24073381 |
Rikke Sick Andersen1, Sofie Ramskov Andersen, Mads Duus Hjortsø, Rikke Lyngaa, Manja Idorn, Tania Maria Køllgård, Ozcan Met, Per Thor Straten, Sine Reker Hadrup.
Abstract
A number of cytotoxic T-cell epitopes are cryptic epitopes generated from non-conventional sources. These include epitopes that are encoded by alternative open reading frames or in generally non-coding genomic regions, such as introns. We have previously observed a frequent recognition of cryptic epitopes by tumor infiltrating lymphocytes isolated from melanoma patients. Here, we show that such cryptic epitopes are more frequently recognized than antigens of the same class encoded by canonical reading frames. Furthermore, we report the presence of T cells specific for three cryptic epitopes encoded in intronic sequences, as a result of incomplete splicing, in the circulation of melanoma patients. One of these epitopes derives from antigen isolated from immunoselected melanoma 2 (AIM2), while the two others are encoded in an alternative open reading frame of an incompletely spliced form of N-acetylglucosaminyl-transferase V (GNT-V) known as NA17-A. We have detected frequent T-cell responses against AIM2 and NA17-A epitopes in the blood of melanoma patients, both prior and after one round of in vitro peptide stimulation, but not in the circulation of healthy individuals and patients with breast or renal carcinoma. In summary, our findings indicate that the T-cell reactivity against AIM2 and NA17-A in the blood of melanoma patients is extensive, suggesting that-similar to melan A (also known as MART1)-these antigens might be used for immunomonitoring or as model antigens in several clinical and preclinical settings.Entities:
Keywords: CD8 T cells; T-cell reactivity; antigens; cryptic T-cell epitopes; melanoma
Year: 2013 PMID: 24073381 PMCID: PMC3782131 DOI: 10.4161/onci.25374
Source DB: PubMed Journal: Oncoimmunology ISSN: 2162-4011 Impact factor: 8.110

Figure 1. Contribution of tumor-associated antigen classes to T-cell reactivity in melanoma-infiltrating lymphocytes. (A and B) Pie charts show the classification of 175 previously described melanoma-associated T-cell epitopes (A) and the distribution of 37 T-cell responses against these tumor-associated antigens (TAAs) previously detected among tumor-infiltrating lymphocytes (TILs) (B) into classes. Please note that each response is only counted once in each patient. (C and D) Pie charts as in (A and B), respectively, with cryptic epitopes considered as a standalone class of TAAs.

Figure 2. T-cell reactivity against AIM2 and NA17-A in the circulation of melanoma patients. (A, C, and E) T-cell responses measured with MHC multimers. Responses detectable on freshly thawed peripheral blood lymphocytes (PBLs) are illustrated in gray, while responses detectable upon culture in the presence of relevant peptides are shown in black. Striped bars indicate responses that were below the detection limit of 10 MHC multimer+ events. The X-axis report patient ID (MM), while the Y-axis (logarithmic scale) depicts the frequency of multimer+ cells. Representative dot plots are shown in . (B, D, and F) T-cell responses measured with interferon γ (IFNγ)-specific ELISPOT assays. Black bars indicate positive responses, with more than twice as many spots in experimental wells than in control wells, while white bars indicate responses that were below the detection limit. Data are reported as mean ± SD of 2 replicate measurements. The X-axis report patient ID while the Y-axis depict the number of spots per 105 cells recorded in IFNγ ELISPOT assays.
Table 1. Overview of T-cell responses against three cryptic epitopes in healthy subjects and melanoma, breast carcinoma, and renal cell carcinoma patients
| AIM2 | NA17-A nonamer | NA17-A decamer | |
|---|---|---|---|
| Melanoma | 6/13 (46%) | 6/16 (38%) | 6/16 (38%) |
| Breast cancer | 0/9 (0%)* | 0/7 (0%) | 0/7 (0%)> |
| Renal cell carcinoma | 0/4 (0%) | 0/4 (0%) | 0/4 (0%) |
| Healthy donors | 0/13 (0%)* | 0/15 (0%)* | 0/15 (0%)* |
P < 0.05 (Fisher’s exact test), as compared with melanoma patients.

Figure 3. Functionality of AIM2-specific T-cell cultures. Four FACS-sorted, expanded AIM2-specific T-cell cultures were established from patients MM5, MM7, MM8, and MM9. (A) Three of these cultures were stimulated with BM36.1 cells pulsed with the AIM2 decapeptide or HIV-A1 (control peptide) at a 10:1 effector:target ratio, and cytokine production was measured by intracellular cytokine staining. Background was <0.4% and was subtracted from positive samples. The frequency of AIM2-specific multimer+CD8+ T lymphocytes (among total CD8+ T cells) in each culture was: 19.6%, 14%, and 61.6% for MM7, MM8, and MM9, respectively. (B) T-cell cultures from patients MM7, MM8, and MM9 were stimulated with BM36.1 cells pulsed with the AIM2 decapeptide or HIV-A1 (control peptide) at the indicated effector:target ratio and cytotoxicity was measured by 51Cr-release assays. The frequency of AIM2 specific multimer+ T cells (among total live cells) was: 17.2%, 2.7%, and 31.6% for MM7, MM8, and MM9, respectively. (C) The T-cell culture established from patient MM5 was stimulated with the indicated melanoma cell lines at the indicated effector:target ratio and cytotoxicity was measured by 51Cr-release assays. FM28 cells are HLA-A1+ while FM48 and FM74 cells are HLA-A1−, yet all express AIM2 (as determined by PCR; data not shown). To test peptide-specificity and HLA-restriction, FM28 cells were pulsed with the AIM2-derived decapeptide or incubated with an anti-MHC Class I antibody (W6/32). Furthermore, cold target inhibition was performed using unlabeled BM36.1 cells pulsed with either HIV-A1 or the AIM2-derived decapeptide at an inhibitor:target ratio of 20:1. There were 68% AIM2 specific T cells in the culture. Data are reported as mean ± SD of 2 replicate measurements.