| Literature DB >> 24070122 |
Yildiz Yildiz1, Per Hoffmann, Stefan Vom Dahl, Bernadette Breiden, Roger Sandhoff, Claus Niederau, Mia Horwitz, Stefan Karlsson, Mirella Filocamo, Deborah Elstein, Michael Beck, Konrad Sandhoff, Eugen Mengel, Maria C Gonzalez, Markus M Nöthen, Ellen Sidransky, Ari Zimran, Manuel Mattheisen.
Abstract
BACKGROUND: Gaucher disease (GD) is the most common inherited lysosomal storage disorder in humans, caused by mutations in the gene encoding the lysosomal enzyme glucocerebrosidase (GBA1). GD is clinically heterogeneous and although the type of GBA1 mutation plays a role in determining the type of GD, it does not explain the clinical variability seen among patients. Cumulative evidence from recent studies suggests that GBA2 could play a role in the pathogenesis of GD and potentially interacts with GBA1.Entities:
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Year: 2013 PMID: 24070122 PMCID: PMC3850879 DOI: 10.1186/1750-1172-8-151
Source DB: PubMed Journal: Orphanet J Rare Dis ISSN: 1750-1172 Impact factor: 4.123
Figure 1Quantitative mass spectrometric analysis of HexCer (sum of GlcCer and GalCer). (A) Total HexCer amount in liver, spleen, and brain of 6 -month-old GBA2-deficient (KO) and wild-type (WT) mice. (B) Amount of the HexCer species carrying the typical neuronal ceramide anchor with a stearic acyl residue. *: P < 0.05, n = 4 animals per group. (C) TLC of a representative brain lipid sample in which GlcCer and GalCer are separated. Note the increased GlcCer in the KO. The double band reflects heterogeneity of its ceramide anchor composition.
Figure 2mRNA expression of and in GBA1-deficient embryonic mice fibroblasts [24]expressed as fold change versus . 18S-RNA was used as internal control. Western blot analysis for GBA2 in GBA1-deficient embryonic mice fibroblasts, beta-actin was used as loading control.
Figure 3GlcCer levels in GBA-deficient mice. Thin layer chromatography (TLC) analysing glycosphingolipids from spleen of 12-month-old GBA1-deficient, GBA2-deficient, and GBA1/GBA2-deficient mice. Representative TLC analysis shown neutral sphingolipids of 5 mg (wet weight). WT: wild-type, KO: knockout mice, GlcCer: glucosylceramide, LacCer: lactosylceramide, SM: sphingomyelin.
Tests for additional allelic or genotypic effect on association of p.L444P and p.N370S with severity of Gaucher disease
| | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| rs10814274 | 35724942 | T | 0.494 | 0.479 | 0.811 | 0.3971 | 0.1444 | 0.0585 | 0.3160 |
| rs34312177 | 35730649 | T | 0.067 | 0.057 | 0.769 | 0.3679 | 0.0650 | 0.5723 | |
| rs3833700 | 35738696 | T | 0.302 | 0.292 | 0.847 | 0.3050 | 0.4095 | 0.7977 | |
| rs1570246 | 35738843 | A | 0.494 | 0.479 | 0.811 | 0.3971 | 0.1444 | 0.0585 | 0.3160 |
| rs3750434 | 35738985 | T | 0.500 | 0.479 | 0.739 | 0.4098 | 0.1445 | 0.0620 | 0.3213 |
| rs1570247 | 35739264 | T | 0.500 | 0.500 | 1.000 | 0.4339 | 0.3288 | 0.0735 | 0.4953 |
| rs2236288 | 35739837 | G | 0.186 | 0.219 | 0.518 | 0.0895 | 0.9200 | 0.1329 | 0.7770 |
| rs1570249 | 35741250 | T | 0.494 | 0.479 | 0.811 | 0.3971 | 0.1444 | 0.0585 | 0.3160 |
| rs2145923 | 35742243 | C | 0.157 | 0.125 | 0.480 | 0.6267 | 0.2096 | 0.3936 | 0.3599 |
| rs1322045 | 35742487 | C | 0.300 | 0.292 | 0.880 | 0.3138 | 0.4113 | 0.7973 | |
| rs1570250 | 35742683 | T | 0.302 | 0.292 | 0.847 | 0.3050 | 0.4095 | 0.7977 | |
| rs34478611 | 35743925 | T | 0.204 | 0.229 | 0.622 | 0.8899 | 0.6611 | 0.1400 | 0.4579 |
| rs4878628 | 35744491 | T | 0.234 | 0.234 | 0.998 | 0.2716 | 0.6676 | 0.7601 | |
| rs10814275 | 35748564 | G | 0.155 | 0.117 | 0.408 | 0.1883 | 0.4275 | 0.3808 | 0.7907 |
| rs1570248 | 35756549 | G | 0.302 | 0.292 | 0.847 | 0.3050 | 0.4095 | 0.7977 | |
| rs10972579 | 35766001 | T | 0.055 | 0.106 | 0.118 | 0.1054 | 0.6855 | 0.8601 | |
| rs10972581 | 35769559 | T | 0.471 | 0.479 | 0.900 | 0.9124 | 0.2853 | 0.2255 | 0.3993 |
MA Minor Allele, MAF frequency of MA in patients with type 1 GD, MAF frequency of MA in patients with type 2/3 GD, P p-value for logistic regression single-marker analysis, P and P P-values (uncorrected) for additional allelic and genotypic effect of GBA2 SNP on p.L444P and p.N370S association, respectively. P-values are in bold in case they reach the level of nominal significance (P < 0.05).
Tests for epistatic effect of p.L444P or p.N370S and markers at GBA2 locus on severity of Gaucher disease
| | |||||||
|---|---|---|---|---|---|---|---|
| rs10814274 | 35724942 | T | 0.811 | 0.3195 | 0.4648 | 1.0000 | |
| rs34312177 | 35730649 | T | 0.769 | 0.0672 | 0.6933 | 0.4809 | 1.0000 |
| rs3833700 | 35738696 | T | 0.847 | 0.0735 | 0.9861 | 1.0000 | |
| rs1570246 | 35738843 | A | 0.811 | 0.3195 | 0.4648 | 1.0000 | |
| rs3750434 | 35738985 | T | 0.739 | 0.3328 | 0.4673 | 1.0000 | |
| rs1570247 | 35739264 | T | 1.000 | 0.3528 | 0.8580 | 1.0000 | |
| rs2236288 | 35739837 | G | 0.518 | 0.1145 | 0.8734 | 0.9957 | 1.0000 |
| rs1570249 | 35741250 | T | 0.811 | 0.3195 | 0.4648 | 1.0000 | |
| rs2145923 | 35742243 | C | 0.480 | 0.4546 | 1.0000 | 0.8296 | 1.0000 |
| rs1322045 | 35742487 | C | 0.880 | 0.0787 | 0.9844 | 1.0000 | |
| rs1570250 | 35742683 | T | 0.847 | 0.0735 | 0.9861 | 1.0000 | |
| rs34478611 | 35743925 | T | 0.622 | 0.5245 | 0.9975 | 1.0000 | |
| rs4878628 | 35744491 | T | 0.998 | 0.9886 | 1.0000 | ||
| rs10814275 | 35748564 | G | 0.408 | 0.6472 | 1.0000 | 0.6777 | 1.0000 |
| rs1570248 | 35756549 | G | 0.847 | 0.0735 | 0.9861 | 1.0000 | |
| rs10972579 | 35766001 | T | 0.118 | 0.0548 | 0.6163 | 0.7097 | 1.0000 |
| rs10972581 | 35769559 | T | 0.900 | 0.0995 | 0.8316 | 0.2835 | 0.9965 |
MA Minor Allele, P p-value for logistic regression single-marker analysis, P and P p-Values for genotypic interaction without taking marginal effects into account (nominal and corrected for number of markers at GBA2 locus). P-values are in bold in case they reach the level of nominal significance (P < 0.05).