Literature DB >> 24067650

Optimizing water permeability through the hourglass shape of aquaporins.

Simon Gravelle1, Laurent Joly, François Detcheverry, Christophe Ybert, Cécile Cottin-Bizonne, Lydéric Bocquet.   

Abstract

The ubiquitous aquaporin channels are able to conduct water across cell membranes, combining the seemingly antagonist functions of a very high selectivity with a remarkable permeability. Whereas molecular details are obvious keys to perform these tasks, the overall efficiency of transport in such nanopores is also strongly limited by viscous dissipation arising at the connection between the nanoconstriction and the nearby bulk reservoirs. In this contribution, we focus on these so-called entrance effects and specifically examine whether the characteristic hourglass shape of aquaporins may arise from a geometrical optimum for such hydrodynamic dissipation. Using a combination of finite-element calculations and analytical modeling, we show that conical entrances with suitable opening angle can indeed provide a large increase of the overall channel permeability. Moreover, the optimal opening angles that maximize the permeability are found to compare well with the angles measured in a large variety of aquaporins. This suggests that the hourglass shape of aquaporins could be the result of a natural selection process toward optimal hydrodynamic transport. Finally, in a biomimetic perspective, these results provide guidelines to design artificial nanopores with optimal performances.

Entities:  

Keywords:  biochannels; hydrodynamic permeability; nanofluidics

Mesh:

Substances:

Year:  2013        PMID: 24067650      PMCID: PMC3799357          DOI: 10.1073/pnas.1306447110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  29 in total

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Authors:  M Borgnia; S Nielsen; A Engel; P Agre
Journal:  Annu Rev Biochem       Date:  1999       Impact factor: 23.643

2.  Energetics of glycerol conduction through aquaglyceroporin GlpF.

Authors:  Morten Ø Jensen; Sanghyun Park; Emad Tajkhorshid; Klaus Schulten
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-07       Impact factor: 11.205

3.  Capillary filling with giant liquid/solid slip: dynamics of water uptake by carbon nanotubes.

Authors:  Laurent Joly
Journal:  J Chem Phys       Date:  2011-12-07       Impact factor: 3.488

4.  HOLE: a program for the analysis of the pore dimensions of ion channel structural models.

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Journal:  J Mol Graph       Date:  1996-12

5.  Water transport in human aquaporin-4: molecular dynamics (MD) simulations.

Authors:  Yubao Cui; David A Bastien
Journal:  Biochem Biophys Res Commun       Date:  2011-08-12       Impact factor: 3.575

6.  Water flow in carbon nanotubes: transition to subcontinuum transport.

Authors:  John A Thomas; Alan J H McGaughey
Journal:  Phys Rev Lett       Date:  2009-05-08       Impact factor: 9.161

7.  Barriers to superfast water transport in carbon nanotube membranes.

Authors:  Jens H Walther; Konstantinos Ritos; Eduardo R Cruz-Chu; Constantine M Megaridis; Petros Koumoutsakos
Journal:  Nano Lett       Date:  2013-04-12       Impact factor: 11.189

Review 8.  Water in nonpolar confinement: from nanotubes to proteins and beyond.

Authors:  Jayendran C Rasaiah; Shekhar Garde; Gerhard Hummer
Journal:  Annu Rev Phys Chem       Date:  2008       Impact factor: 12.703

9.  The structure of the aquaporin-1 water channel: a comparison between cryo-electron microscopy and X-ray crystallography.

Authors:  Bert L de Groot; Andreas Engel; Helmut Grubmüller
Journal:  J Mol Biol       Date:  2003-01-17       Impact factor: 5.469

10.  In silico study of Aquaporin V: Effects and affinity of the central pore-occluding lipid.

Authors:  Y B Zhang; L Y Chen
Journal:  Biophys Chem       Date:  2012-10-02       Impact factor: 2.352

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  24 in total

1.  Thermodynamic insight into spontaneous hydration and rapid water permeation in aquaporins.

Authors:  A Barati Farimani; N R Aluru; Emad Tajkhorshid
Journal:  Appl Phys Lett       Date:  2014-08-25       Impact factor: 3.791

2.  1,3-propanediol binds deep inside the channel to inhibit water permeation through aquaporins.

Authors:  Lili Yu; Roberto A Rodriguez; L Laurie Chen; Liao Y Chen; George Perry; Stanton F McHardy; Chih-Ko Yeh
Journal:  Protein Sci       Date:  2016-02       Impact factor: 6.725

3.  The Water Permeability and Pore Entrance Structure of Aquaporin-4 Depend on Lipid Bilayer Thickness.

Authors:  Jihong Tong; Zhe Wu; Margaret M Briggs; Klaus Schulten; Thomas J McIntosh
Journal:  Biophys J       Date:  2016-07-12       Impact factor: 4.033

4.  Computing osmotic permeabilities of aquaporins AQP4, AQP5, and GlpF from near-equilibrium simulations.

Authors:  Thierry O Wambo; Roberto A Rodriguez; Liao Y Chen
Journal:  Biochim Biophys Acta Biomembr       Date:  2017-04-25       Impact factor: 3.747

Review 5.  Vapor-deposited functional polymer thin films in biological applications.

Authors:  Alexandra Khlyustova; Yifan Cheng; Rong Yang
Journal:  J Mater Chem B       Date:  2020-06-17       Impact factor: 6.331

6.  Computing membrane-AQP5-phosphatidylserine binding affinities with hybrid steered molecular dynamics approach.

Authors:  Liao Y Chen
Journal:  Mol Membr Biol       Date:  2015-05-08       Impact factor: 2.857

Review 7.  Water in Nanopores and Biological Channels: A Molecular Simulation Perspective.

Authors:  Charlotte I Lynch; Shanlin Rao; Mark S P Sansom
Journal:  Chem Rev       Date:  2020-08-25       Impact factor: 60.622

8.  1,3-Propanediol binds inside the water-conducting pore of aquaporin 4: Does this efficacious inhibitor have sufficient potency?

Authors:  Lili Yu; Oscar D Villarreal; L Laurie Chen; Liao Y Chen
Journal:  J Syst Integr Neurosci       Date:  2016-01-23

9.  Programming nanopore ion flow for encoded multiplex microRNA detection.

Authors:  Xinyue Zhang; Yong Wang; Brandon L Fricke; Li-Qun Gu
Journal:  ACS Nano       Date:  2014-03-26       Impact factor: 15.881

10.  Electroosmotic flow reversal outside glass nanopores.

Authors:  Nadanai Laohakunakorn; Vivek V Thacker; Murugappan Muthukumar; Ulrich F Keyser
Journal:  Nano Lett       Date:  2014-12-15       Impact factor: 11.189

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