Literature DB >> 24066782

Deamidation of asparagine to aspartate destabilizes Cu, Zn superoxide dismutase, accelerates fibrillization, and mirrors ALS-linked mutations.

Yunhua Shi1, Nicholas R Rhodes, Alireza Abdolvahabi, Taylor Kohn, Nathan P Cook, Angel A Marti, Bryan F Shaw.   

Abstract

The reactivity of asparagine residues in Cu, Zn superoxide dismutase (SOD1) to deamidate to aspartate remains uncharacterized; its occurrence in SOD1 has not been investigated, and the biophysical effects of deamidation on SOD1 are unknown. Deamidation is, nonetheless, chemically equivalent to Asn-to-Asp missense mutations in SOD1 that cause amyotrophic lateral sclerosis (ALS). This study utilized computational methods to identify three asparagine residues in wild-type (WT) SOD1 (i.e., N26, N131, and N139) that are predicted to undergo significant deamidation (i.e., to >20%) on time scales comparable to the long lifetime (>1 year) of SOD1 in large motor neurons. Site-directed mutagenesis was used to successively substitute these asparagines with aspartate (to mimic deamidation) according to their predicted deamidation rate, yielding: N26D, N26D/N131D, and N26D/N131D/N139D SOD1. Differential scanning calorimetry demonstrated that the thermostability of N26D/N131D/N139D SOD1 is lower than WT SOD1 by ~2-8 °C (depending upon the state of metalation) and <3 °C lower than the ALS mutant N139D SOD1. The triply deamidated analog also aggregated into amyloid fibrils faster than WT SOD1 by ~2-fold (p < 0.008**) and at a rate identical to ALS mutant N139D SOD1 (p > 0.2). A total of 534 separate amyloid assays were performed to generate statistically significant comparisons of aggregation rates among WT and N/D SOD1 proteins. Capillary electrophoresis and mass spectrometry demonstrated that ~23% of N26 is deamidated to aspartate (iso-aspartate was undetectable) in a preparation of WT human SOD1 (isolated from erythrocytes) that has been used for decades by researchers as an analytical standard. The deamidation of asparagine--an analytically elusive, sub-Dalton modification--represents a plausible and overlooked mechanism by which WT SOD1 is converted to a neurotoxic isoform that has a similar structure, instability, and aggregation propensity as ALS mutant N139D SOD1.

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Year:  2013        PMID: 24066782     DOI: 10.1021/ja407801x

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  16 in total

1.  Engineering deamidation-susceptible asparagines leads to improved stability to thermal cycling in a lipase.

Authors:  K Bhanuramanand; Shoeb Ahmad; N M Rao
Journal:  Protein Sci       Date:  2014-08-05       Impact factor: 6.725

2.  Wild-type human γD-crystallin promotes aggregation of its oxidation-mimicking, misfolding-prone W42Q mutant.

Authors:  Eugene Serebryany; Jonathan A King
Journal:  J Biol Chem       Date:  2015-03-18       Impact factor: 5.157

Review 3.  Therapeutic protein aggregation: mechanisms, design, and control.

Authors:  Christopher J Roberts
Journal:  Trends Biotechnol       Date:  2014-06-04       Impact factor: 19.536

4.  Parsing disease-relevant protein modifications from epiphenomena: perspective on the structural basis of SOD1-mediated ALS.

Authors:  N D Schmitt; J N Agar
Journal:  J Mass Spectrom       Date:  2017-07       Impact factor: 1.982

5.  Arresting amyloid with coulomb's law: acetylation of ALS-linked SOD1 by aspirin impedes aggregation.

Authors:  Alireza Abdolvahabi; Yunhua Shi; Nicholas R Rhodes; Nathan P Cook; Angel A Martí; Bryan F Shaw
Journal:  Biophys J       Date:  2015-03-10       Impact factor: 4.033

6.  Protein charge ladders reveal that the net charge of ALS-linked superoxide dismutase can be different in sign and magnitude from predicted values.

Authors:  Yunhua Shi; Alireza Abdolvahabi; Bryan F Shaw
Journal:  Protein Sci       Date:  2014-08-07       Impact factor: 6.725

7.  Lysine acylation in superoxide dismutase-1 electrostatically inhibits formation of fibrils with prion-like seeding.

Authors:  Sanaz Rasouli; Alireza Abdolvahabi; Corbin M Croom; Devon L Plewman; Yunhua Shi; Jacob I Ayers; Bryan F Shaw
Journal:  J Biol Chem       Date:  2017-10-03       Impact factor: 5.157

8.  Structural effects of protein aging: terminal marking by deamidation in human triosephosphate isomerase.

Authors:  Ignacio de la Mora-de la Mora; Alfredo Torres-Larios; Sergio Enríquez-Flores; Sara-Teresa Méndez; Adriana Castillo-Villanueva; Saúl Gómez-Manzo; Gabriel López-Velázquez; Jaime Marcial-Quino; Angélica Torres-Arroyo; Itzhel García-Torres; Horacio Reyes-Vivas; Jesús Oria-Hernández
Journal:  PLoS One       Date:  2015-04-17       Impact factor: 3.240

9.  How Do Gyrating Beads Accelerate Amyloid Fibrillization?

Authors:  Alireza Abdolvahabi; Yunhua Shi; Sanaz Rasouli; Corbin M Croom; Aleksandra Chuprin; Bryan F Shaw
Journal:  Biophys J       Date:  2017-01-24       Impact factor: 4.033

10.  Prediction of Spontaneous Protein Deamidation from Sequence-Derived Secondary Structure and Intrinsic Disorder.

Authors:  J Ramiro Lorenzo; Leonardo G Alonso; Ignacio E Sánchez
Journal:  PLoS One       Date:  2015-12-16       Impact factor: 3.240

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