Literature DB >> 24063884

Human genetic data reveal contrasting demographic patterns between sedentary and nomadic populations that predate the emergence of farming.

Carla Aimé1, Guillaume Laval, Etienne Patin, Paul Verdu, Laure Ségurel, Raphaëlle Chaix, Tatyana Hegay, Lluis Quintana-Murci, Evelyne Heyer, Frédéric Austerlitz.   

Abstract

Demographic changes are known to leave footprints on genetic polymorphism. Together with the increased availability of large polymorphism data sets, coalescent-based methods allow inferring the past demography of populations from their present-day patterns of genetic diversity. Here, we analyzed both nuclear (20 noncoding regions) and mitochondrial (HVS-I) resequencing data to infer the demographic history of 66 African and Eurasian human populations presenting contrasting lifestyles (nomadic hunter-gatherers, nomadic herders, and sedentary farmers). This allowed us to investigate the relationship between lifestyle and demography and to address the long-standing debate about the chronology of demographic expansions and the Neolithic transition. In Africa, we inferred expansion events for farmers, but constant population sizes or contraction events for hunter-gatherers. In Eurasia, we inferred higher expansion rates for farmers than herders with HVS-I data, except in Central Asia and Korea. Although isolation and admixture processes could have impacted our demographic inferences, these processes alone seem unlikely to explain the contrasted demographic histories inferred in populations with different lifestyles. The small expansion rates or constant population sizes inferred for herders and hunter-gatherers may thus result from constraints linked to nomadism. However, autosomal data revealed contraction events for two sedentary populations in Eurasia, which may be caused by founder effects. Finally, the inferred expansions likely predated the emergence of agriculture and herding. This suggests that human populations could have started to expand in Paleolithic times, and that strong Paleolithic expansions in some populations may have ultimately favored their shift toward agriculture during the Neolithic.

Entities:  

Keywords:  coalescent; expansions; inferences; neolithic transition; population genetics

Mesh:

Substances:

Year:  2013        PMID: 24063884     DOI: 10.1093/molbev/mst156

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  12 in total

1.  Agriculture, population growth, and statistical analysis of the radiocarbon record.

Authors:  H Jabran Zahid; Erick Robinson; Robert L Kelly
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-22       Impact factor: 11.205

2.  Microsatellite data show recent demographic expansions in sedentary but not in nomadic human populations in Africa and Eurasia.

Authors:  Carla Aimé; Paul Verdu; Laure Ségurel; Begoña Martinez-Cruz; Tatyana Hegay; Evelyne Heyer; Frédéric Austerlitz
Journal:  Eur J Hum Genet       Date:  2014-02-12       Impact factor: 4.246

3.  Different kinds of genetic markers permit inference of Paleolithic and Neolithic expansions in humans.

Authors:  Carla Aimé; Frédéric Austerlitz
Journal:  Eur J Hum Genet       Date:  2016-12-21       Impact factor: 4.246

4.  The genomic origins of the world's first farmers.

Authors:  Nina Marchi; Laura Winkelbach; Ilektra Schulz; Maxime Brami; Zuzana Hofmanová; Jens Blöcher; Carlos S Reyna-Blanco; Yoan Diekmann; Alexandre Thiéry; Adamandia Kapopoulou; Vivian Link; Valérie Piuz; Susanne Kreutzer; Sylwia M Figarska; Elissavet Ganiatsou; Albert Pukaj; Travis J Struck; Ryan N Gutenkunst; Necmi Karul; Fokke Gerritsen; Joachim Pechtl; Joris Peters; Andrea Zeeb-Lanz; Eva Lenneis; Maria Teschler-Nicola; Sevasti Triantaphyllou; Sofija Stefanović; Christina Papageorgopoulou; Daniel Wegmann; Joachim Burger; Laurent Excoffier
Journal:  Cell       Date:  2022-05-12       Impact factor: 66.850

5.  Hunter-gatherer genomes reveal diverse demographic trajectories during the rise of farming in Eastern Africa.

Authors:  Shyamalika Gopalan; Richard E W Berl; Justin W Myrick; Zachary H Garfield; Austin W Reynolds; Barnabas K Bafens; Gillian Belbin; Mira Mastoras; Cole Williams; Michelle Daya; Akmel N Negash; Marcus W Feldman; Barry S Hewlett; Brenna M Henn
Journal:  Curr Biol       Date:  2022-03-09       Impact factor: 10.900

6.  Variation in NAT2 acetylation phenotypes is associated with differences in food-producing subsistence modes and ecoregions in Africa.

Authors:  Eliška Podgorná; Issa Diallo; Christelle Vangenot; Alicia Sanchez-Mazas; Audrey Sabbagh; Viktor Černý; Estella S Poloni
Journal:  BMC Evol Biol       Date:  2015-12-01       Impact factor: 3.260

7.  The episode of genetic drift defining the migration of humans out of Africa is derived from a large east African population size.

Authors:  Nuha Elhassan; Eyoab Iyasu Gebremeskel; Mohamed Ali Elnour; Dan Isabirye; John Okello; Ayman Hussien; Dominic Kwiatksowski; Jibril Hirbo; Sara Tishkoff; Muntaser E Ibrahim
Journal:  PLoS One       Date:  2014-05-20       Impact factor: 3.240

8.  An earlier revolution: genetic and genomic analyses reveal pre-existing cultural differences leading to Neolithization.

Authors:  Michela Leonardi; Guido Barbujani; Andrea Manica
Journal:  Sci Rep       Date:  2017-06-14       Impact factor: 4.379

9.  Inferring the Dynamics of Effective Population Size Using Autosomal Genomes.

Authors:  Zheng Hou; Yin Luo; Zhisheng Wang; Hong-Xiang Zheng; Yi Wang; Hang Zhou; Leqin Wu; Li Jin
Journal:  Sci Rep       Date:  2016-02-01       Impact factor: 4.379

10.  Global demographic history of human populations inferred from whole mitochondrial genomes.

Authors:  Eleanor F Miller; Andrea Manica; William Amos
Journal:  R Soc Open Sci       Date:  2018-08-22       Impact factor: 2.963

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