Literature DB >> 24059505

Genetically encoding phenyl azide chemistry: new uses and ideas for classical biochemistry.

Samuel Reddington1, Peter Watson, Pierre Rizkallah, Eric Tippmann, D Dafydd Jones.   

Abstract

Introducing new physicochemical properties into proteins through genetically encoded Uaa (unnatural amino acid) incorporation can lead to the generation of proteins with novel properties not normally accessible with the 20 natural amino acids. Phenyl azide chemistry represents one such useful addition to the protein repertoire. Classically used in biochemistry as a non-specific photochemical protein cross-linker, genetically encoding phenyl azide chemistry at selected residues provides more powerful routes to post-translationally modify protein function in situ. The two main routes are modulation by light (optogenetics) and site-specific bio-orthogonal modification (bioconjugation) via Click chemistry. In the present article, we discuss both approaches and their influence on protein function.

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Year:  2013        PMID: 24059505     DOI: 10.1042/BST20130094

Source DB:  PubMed          Journal:  Biochem Soc Trans        ISSN: 0300-5127            Impact factor:   5.407


  11 in total

1.  Synthesis and Explosion Hazards of 4-Azido-l-phenylalanine.

Authors:  Mark B Richardson; Derek B Brown; Carlos A Vasquez; Joseph W Ziller; Kevin M Johnston; Gregory A Weiss
Journal:  J Org Chem       Date:  2018-04-02       Impact factor: 4.354

2.  Photo-Crosslinkable Unnatural Amino Acids Enable Facile Synthesis of Thermoresponsive Nano- to Microgels of Intrinsically Disordered Polypeptides.

Authors:  Simone A Costa; Joseph R Simon; Miriam Amiram; Lei Tang; Stefan Zauscher; Eric M Brustad; Farren J Isaacs; Ashutosh Chilkoti
Journal:  Adv Mater       Date:  2017-12-11       Impact factor: 30.849

3.  Functional modulation and directed assembly of an enzyme through designed non-natural post-translation modification.

Authors:  Andrew M Hartley; Athraa J Zaki; Adam R McGarrity; Cecile Robert-Ansart; Andriy V Moskalenko; Gareth F Jones; Monica F Craciun; Saverio Russo; Martin Elliott; J Emyr Macdonald; D Dafydd Jones
Journal:  Chem Sci       Date:  2015-03-31       Impact factor: 9.825

4.  In-frame amber stop codon replacement mutagenesis for the directed evolution of proteins containing non-canonical amino acids: identification of residues open to bio-orthogonal modification.

Authors:  James A J Arpino; Amy J Baldwin; Adam R McGarrity; Eric M Tippmann; D Dafydd Jones
Journal:  PLoS One       Date:  2015-05-26       Impact factor: 3.240

5.  Molecular basis for functional switching of GFP by two disparate non-native post-translational modifications of a phenyl azide reaction handle.

Authors:  Andrew M Hartley; Harley L Worthy; Samuel C Reddington; Pierre J Rizkallah; D Dafydd Jones
Journal:  Chem Sci       Date:  2016-06-29       Impact factor: 9.825

6.  Directed evolution of GFP with non-natural amino acids identifies residues for augmenting and photoswitching fluorescence.

Authors:  Samuel C Reddington; Amy J Baldwin; Rebecca Thompson; Andrea Brancale; Eric M Tippmann; D Dafydd Jones
Journal:  Chem Sci       Date:  2014-11-07       Impact factor: 9.825

Review 7.  Better together: building protein oligomers naturally and by design.

Authors:  Rebecca E A Gwyther; D Dafydd Jones; Harley L Worthy
Journal:  Biochem Soc Trans       Date:  2019-12-20       Impact factor: 5.407

8.  Photosensitive tyrosine analogues unravel site-dependent phosphorylation in TrkA initiated MAPK/ERK signaling.

Authors:  Shu Zhao; Jia Shi; Guohua Yu; Dali Li; Meng Wang; Chonggang Yuan; Huihui Zhou; Amirabbas Parizadeh; Zhenlin Li; Min-Xin Guan; Shixin Ye
Journal:  Commun Biol       Date:  2020-11-25

Review 9.  A Photosensitized Singlet Oxygen (1O2) Toolbox for Bio-Organic Applications: Tailoring 1O2 Generation for DNA and Protein Labelling, Targeting and Biosensing.

Authors:  Dorien Aerssens; Enrico Cadoni; Laure Tack; Annemieke Madder
Journal:  Molecules       Date:  2022-01-25       Impact factor: 4.411

10.  Click Decoration of Bombyx mori Silk Fibroin for Cell Adhesion Control.

Authors:  Hidetoshi Teramoto; Minori Shirakawa; Yasushi Tamada
Journal:  Molecules       Date:  2020-09-08       Impact factor: 4.411

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