Literature DB >> 24056930

Going back to the roots: the microbial ecology of the rhizosphere.

Laurent Philippot1, Jos M Raaijmakers, Philippe Lemanceau, Wim H van der Putten.   

Abstract

The rhizosphere is the interface between plant roots and soil where interactions among a myriad of microorganisms and invertebrates affect biogeochemical cycling, plant growth and tolerance to biotic and abiotic stress. The rhizosphere is intriguingly complex and dynamic, and understanding its ecology and evolution is key to enhancing plant productivity and ecosystem functioning. Novel insights into key factors and evolutionary processes shaping the rhizosphere microbiome will greatly benefit from integrating reductionist and systems-based approaches in both agricultural and natural ecosystems. Here, we discuss recent developments in rhizosphere research in relation to assessing the contribution of the micro- and macroflora to sustainable agriculture, nature conservation, the development of bio-energy crops and the mitigation of climate change.

Mesh:

Year:  2013        PMID: 24056930     DOI: 10.1038/nrmicro3109

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  121 in total

Review 1.  Diversity and natural functions of antibiotics produced by beneficial and plant pathogenic bacteria.

Authors:  Jos M Raaijmakers; Mark Mazzola
Journal:  Annu Rev Phytopathol       Date:  2012-06-06       Impact factor: 13.078

2.  Dynamic of the genetic structure of bacterial and fungal communities at different developmental stages of Medicago truncatula Gaertn. cv. Jemalong line J5.

Authors:  C Mougel; P Offre; L Ranjard; T Corberand; E Gamalero; C Robin; P Lemanceau
Journal:  New Phytol       Date:  2006       Impact factor: 10.151

3.  Selective progressive response of soil microbial community to wild oat roots.

Authors:  Kristen M DeAngelis; Eoin L Brodie; Todd Z DeSantis; Gary L Andersen; Steven E Lindow; Mary K Firestone
Journal:  ISME J       Date:  2008-11-13       Impact factor: 10.302

4.  Virulence of soil-borne pathogens and invasion by Prunus serotina.

Authors:  Kurt O Reinhart; Tom Tytgat; Wim H Van der Putten; Keith Clay
Journal:  New Phytol       Date:  2010-01-19       Impact factor: 10.151

Review 5.  Arbuscular mycorrhiza: the mother of plant root endosymbioses.

Authors:  Martin Parniske
Journal:  Nat Rev Microbiol       Date:  2008-10       Impact factor: 60.633

6.  Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates.

Authors:  S Henry; S Texier; S Hallet; D Bru; C Dambreville; D Chèneby; F Bizouard; J C Germon; L Philippot
Journal:  Environ Microbiol       Date:  2008-04-03       Impact factor: 5.491

7.  Characterisation of microbial communities colonising the hyphal surfaces of arbuscular mycorrhizal fungi.

Authors:  Tanja R Scheublin; Ian R Sanders; Christoph Keel; Jan Roelof van der Meer
Journal:  ISME J       Date:  2010-02-11       Impact factor: 10.302

8.  Spatial patterns of plant diversity below-ground as revealed by DNA barcoding.

Authors:  Prasad R Kesanakurti; Aron J Fazekas; Kevin S Burgess; Diana M Percy; Steven G Newmaster; Sean W Graham; Spencer C H Barrett; Mehrdad Hajibabaei; Brian C Husband
Journal:  Mol Ecol       Date:  2011-01-22       Impact factor: 6.185

9.  A sensitive LC-ESI-Q-TOF-MS method reveals novel phytosiderophores and phytosiderophore-iron complexes in barley.

Authors:  Munkhtsetseg Tsednee; Yit-Wai Mak; Yet-Ran Chen; Kuo-Chen Yeh
Journal:  New Phytol       Date:  2012-06-18       Impact factor: 10.151

10.  Defining the core Arabidopsis thaliana root microbiome.

Authors:  Derek S Lundberg; Sarah L Lebeis; Sur Herrera Paredes; Scott Yourstone; Jase Gehring; Stephanie Malfatti; Julien Tremblay; Anna Engelbrektson; Victor Kunin; Tijana Glavina Del Rio; Robert C Edgar; Thilo Eickhorst; Ruth E Ley; Philip Hugenholtz; Susannah Green Tringe; Jeffery L Dangl
Journal:  Nature       Date:  2012-08-02       Impact factor: 49.962

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  493 in total

Review 1.  A perspective on inter-kingdom signaling in plant-beneficial microbe interactions.

Authors:  Amanda Rosier; Usha Bishnoi; Venkatachalam Lakshmanan; D Janine Sherrier; Harsh P Bais
Journal:  Plant Mol Biol       Date:  2016-01-20       Impact factor: 4.076

2.  Volatile emission compounds from plant growth-promoting bacteria are responsible for the antifungal activity against F. solani.

Authors:  Andrea Gutiérrez-Santa Ana; H A Carrillo-Cerda; J Rodriguez-Campos; M R Kirchmayr; S M Contreras-Ramos; J B Velázquez-Fernández
Journal:  3 Biotech       Date:  2020-06-06       Impact factor: 2.406

3.  Epidemic and endemic pathogen dynamics correspond to distinct host population microbiomes at a landscape scale.

Authors:  Andrea J Jani; Roland A Knapp; Cheryl J Briggs
Journal:  Proc Biol Sci       Date:  2017-06-28       Impact factor: 5.349

4.  Cadmium Exposure-Sedum alfredii Planting Interactions Shape the Bacterial Community in the Hyperaccumulator Plant Rhizosphere.

Authors:  Dandi Hou; Zhi Lin; Runze Wang; Jun Ge; Shuai Wei; Ruohan Xie; Haixin Wang; Kai Wang; Yanfang Hu; Xiaoe Yang; Lingli Lu; Shengke Tian
Journal:  Appl Environ Microbiol       Date:  2018-05-31       Impact factor: 4.792

5.  Duration of the conditioning phase affects the results of plant-soil feedback experiments via soil chemical properties.

Authors:  Clémentine Lepinay; Zuzana Vondráková; Tomáš Dostálek; Zuzana Münzbergová
Journal:  Oecologia       Date:  2017-12-06       Impact factor: 3.225

6.  Pseudomonas chlororaphis Produces Multiple R-Tailocin Particles That Broaden the Killing Spectrum and Contribute to Persistence in Rhizosphere Communities.

Authors:  Robert J Dorosky; Leland S Pierson; Elizabeth A Pierson
Journal:  Appl Environ Microbiol       Date:  2018-08-31       Impact factor: 4.792

7.  ANPELA: analysis and performance assessment of the label-free quantification workflow for metaproteomic studies.

Authors:  Jing Tang; Jianbo Fu; Yunxia Wang; Bo Li; Yinghong Li; Qingxia Yang; Xuejiao Cui; Jiajun Hong; Xiaofeng Li; Yuzong Chen; Weiwei Xue; Feng Zhu
Journal:  Brief Bioinform       Date:  2020-03-23       Impact factor: 11.622

8.  A volatile relationship: profiling an inter-kingdom dialogue between two plant pathogens, Ralstonia Solanacearum and Aspergillus Flavus.

Authors:  Joseph E Spraker; Kelsea Jewell; Ludmila V Roze; Jacob Scherf; Dora Ndagano; Randolph Beaudry; John E Linz; Caitilyn Allen; Nancy P Keller
Journal:  J Chem Ecol       Date:  2014-05-07       Impact factor: 2.626

Review 9.  Rhizosphere Microbiome Cooperations: Strategies for Sustainable Crop Production.

Authors:  Olubukola O Babalola; Obianuju C Emmanuel; Bartholomew S Adeleke; Kehinde A Odelade; Blessing C Nwachukwu; Oluwatobi E Ayiti; Taofeek T Adegboyega; Nicholas O Igiehon
Journal:  Curr Microbiol       Date:  2021-02-20       Impact factor: 2.188

10.  Do soil bacterial communities respond differently to abrupt or gradual additions of copper?

Authors:  Michael McTee; Lorinda Bullington; Matthias C Rillig; Philip W Ramsey
Journal:  FEMS Microbiol Ecol       Date:  2019-01-01       Impact factor: 4.194

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