Literature DB >> 24050248

High-throughput, computer assisted, specific MetID. A revolution for drug discovery.

Ismael Zamora, Fabien Fontaine, Blanca Serra, Guillem Plasencia.   

Abstract

One of the key factors in drug discovery is related to the metabolic properties of the lead compound, which may influence the bioavailability of the drug, its therapeutic window, and unwanted side-effects of its metabolites. Therefore, it is of critical importance to enable the fast translation of the experimentally determined metabolic information into design knowledge. The elucidation of the metabolite structure is the most structurally rich and informative end-point in the available range of metabolic assays. A methodology is presented to partially automate the analysis of this experimental information, making the process more efficient. The computer assisted method helps in the chromatographic peak selection and the metabolite structure assignment, enabling automatic data comparison for qualitative applications (kinetic analysis, cross species comparison).

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Year:  2013        PMID: 24050248     DOI: 10.1016/j.ddtec.2012.10.015

Source DB:  PubMed          Journal:  Drug Discov Today Technol        ISSN: 1740-6749


  8 in total

Review 1.  Predicting drug metabolism: experiment and/or computation?

Authors:  Johannes Kirchmair; Andreas H Göller; Dieter Lang; Jens Kunze; Bernard Testa; Ian D Wilson; Robert C Glen; Gisbert Schneider
Journal:  Nat Rev Drug Discov       Date:  2015-04-24       Impact factor: 84.694

Review 2.  Advances in the study of drug metabolism - symposium report of the 12th Meeting of the International Society for the Study of Xenobiotics (ISSX).

Authors:  Laura E Russell; Mary Alexandra Schleiff; Eric Gonzalez; Aaron G Bart; Fabio Broccatelli; Jessica H Hartman; W Griffith Humphreys; Volker M Lauschke; Iain Martin; Chukwunonso Nwabufo; Bhagwat Prasad; Emily E Scott; Matthew Segall; Ryan Takahashi; Mitchell E Taub; Jasleen K Sodhi
Journal:  Drug Metab Rev       Date:  2020-05-26       Impact factor: 4.518

3.  Structure-metabolism relationships in human-AOX: Chemical insights from a large database of aza-aromatic and amide compounds.

Authors:  Susan Lepri; Martina Ceccarelli; Nicolò Milani; Sara Tortorella; Andrea Cucco; Aurora Valeri; Laura Goracci; Andreas Brink; Gabriele Cruciani
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

Review 4.  Considerations for Improving Metabolism Predictions for In Vitro to In Vivo Extrapolation.

Authors:  Marjory Moreau; Pankajini Mallick; Marci Smeltz; Saad Haider; Chantel I Nicolas; Salil N Pendse; Jeremy A Leonard; Matthew W Linakis; Patrick D McMullen; Rebecca A Clewell; Harvey J Clewell; Miyoung Yoon
Journal:  Front Toxicol       Date:  2022-04-29

Review 5.  Modeling of interactions between xenobiotics and cytochrome P450 (CYP) enzymes.

Authors:  Hannu Raunio; Mira Kuusisto; Risto O Juvonen; Olli T Pentikäinen
Journal:  Front Pharmacol       Date:  2015-06-12       Impact factor: 5.810

6.  Software-aided approach to investigate peptide structure and metabolic susceptibility of amide bonds in peptide drugs based on high resolution mass spectrometry.

Authors:  Tatiana Radchenko; Andreas Brink; Yves Siegrist; Christopher Kochansky; Alison Bateman; Fabien Fontaine; Luca Morettoni; Ismael Zamora
Journal:  PLoS One       Date:  2017-11-01       Impact factor: 3.240

7.  Synthesis and characterization of 1,2,4-triazolo[1,5-a]pyrimidine-2-carboxamide-based compounds targeting the PA-PB1 interface of influenza A virus polymerase.

Authors:  Serena Massari; Chiara Bertagnin; Maria Chiara Pismataro; Anna Donnadio; Giulio Nannetti; Tommaso Felicetti; Stefano Di Bona; Maria Giulia Nizi; Leonardo Tensi; Giuseppe Manfroni; Maria Isabel Loza; Stefano Sabatini; Violetta Cecchetti; Jose Brea; Laura Goracci; Arianna Loregian; Oriana Tabarrini
Journal:  Eur J Med Chem       Date:  2020-10-16       Impact factor: 6.514

8.  Understanding the Metabolism of Proteolysis Targeting Chimeras (PROTACs): The Next Step toward Pharmaceutical Applications.

Authors:  Laura Goracci; Jenny Desantis; Aurora Valeri; Beatrice Castellani; Michela Eleuteri; Gabriele Cruciani
Journal:  J Med Chem       Date:  2020-10-07       Impact factor: 7.446

  8 in total

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