Literature DB >> 24046975

Colorectal cancer through simulation and experiment.

Sophie K Kershaw1, Helen M Byrne, David J Gavaghan, James M Osborne.   

Abstract

Colorectal cancer (CRC) has formed a canonical example of tumourigenesis ever since its use in Fearon and Vogelstein's linear model of genetic mutation, and continues to generate a huge amount of research interest. Over time, the field has witnessed a transition from solely experimental work to the inclusion of mathematical and computational modelling. The fusion of these disciplines has the potential to provide valuable insights into oncologic processes, but also presents the challenge of uniting many diverse perspectives. Furthermore, the cancer cell phenotype defined by the 'Hallmarks of Cancer' has been extended in recent times and provides an excellent basis for future research. The authors present a timely summary of the literature relating to CRC, addressing the traditional experimental findings, summarising the key mathematical and computational approaches, and emphasising the role of the Hallmarks in current and future developments. The authors conclude with a discussion of interdisciplinary work, outlining areas of experimental interest which would benefit from the insight that theoretical modelling can provide.

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Year:  2013        PMID: 24046975      PMCID: PMC8687392          DOI: 10.1049/iet-syb.2012.0019

Source DB:  PubMed          Journal:  IET Syst Biol        ISSN: 1751-8849            Impact factor:   1.615


  172 in total

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Review 3.  Stem cells and their niches.

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Journal:  Cell Tissue Kinet       Date:  1986-11

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Authors:  A B Cairnie; L F Lamerton; G G Steel
Journal:  Exp Cell Res       Date:  1965-09       Impact factor: 3.905

Review 7.  TGF-beta signaling in cancer--a double-edged sword.

Authors:  R J Akhurst; R Derynck
Journal:  Trends Cell Biol       Date:  2001-11       Impact factor: 20.808

Review 8.  Cancer, aging and the optimal tissue design.

Authors:  Natalia L Komarova
Journal:  Semin Cancer Biol       Date:  2005-12       Impact factor: 15.707

Review 9.  Smad-dependent and Smad-independent pathways in TGF-beta family signalling.

Authors:  Rik Derynck; Ying E Zhang
Journal:  Nature       Date:  2003-10-09       Impact factor: 49.962

10.  Identification of programmed cell death in situ via specific labeling of nuclear DNA fragmentation.

Authors:  Y Gavrieli; Y Sherman; S A Ben-Sasson
Journal:  J Cell Biol       Date:  1992-11       Impact factor: 10.539

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  10 in total

1.  Unraveling the Control of Cell Cycle Periods during Intestinal Stem Cell Differentiation.

Authors:  Richard Ballweg; Suengwon Lee; Xiaonan Han; Philip K Maini; Helen Byrne; Christian I Hong; Tongli Zhang
Journal:  Biophys J       Date:  2018-11-03       Impact factor: 4.033

2.  Determining the control networks regulating stem cell lineages in colonic crypts.

Authors:  Jienian Yang; David E Axelrod; Natalia L Komarova
Journal:  J Theor Biol       Date:  2017-06-29       Impact factor: 2.691

Review 3.  Chemoprevention in gastrointestinal physiology and disease. Targeting the progression of cancer with natural products: a focus on gastrointestinal cancer.

Authors:  Roxane Khoogar; Byung-Chang Kim; Jay Morris; Michael J Wargovich
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2016-02-18       Impact factor: 4.052

4.  Multiscale Model of Colorectal Cancer Using the Cellular Potts Framework.

Authors:  James M Osborne
Journal:  Cancer Inform       Date:  2015-10-04

5.  Stem cell competition in the gut: insights from multi-scale computational modelling.

Authors:  Torsten Thalheim; Peter Buske; Jens Przybilla; Karen Rother; Markus Loeffler; Joerg Galle
Journal:  J R Soc Interface       Date:  2016-08       Impact factor: 4.118

6.  A hierarchical Bayesian model for understanding the spatiotemporal dynamics of the intestinal epithelium.

Authors:  Oliver J Maclaren; Aimée Parker; Carmen Pin; Simon R Carding; Alastair J M Watson; Alexander G Fletcher; Helen M Byrne; Philip K Maini
Journal:  PLoS Comput Biol       Date:  2017-07-28       Impact factor: 4.475

7.  The proportion of cancer-related entries in PubMed has increased considerably; is cancer truly "The Emperor of All Maladies"?

Authors:  Constantino Carlos Reyes-Aldasoro
Journal:  PLoS One       Date:  2017-03-10       Impact factor: 3.240

8.  Inferring modes of evolution from colorectal cancer with residual polyp of origin.

Authors:  Minsoo Kim; Brooke R Druliner; Nikolaos Vasmatzis; Taejeong Bae; Nicholas Chia; Alexej Abyzov; Lisa A Boardman
Journal:  Oncotarget       Date:  2017-12-26

9.  Modelling the effect of subcellular mutations on the migration of cells in the colorectal crypt.

Authors:  Lotte B Romijn; Axel A Almet; Chin Wee Tan; James M Osborne
Journal:  BMC Bioinformatics       Date:  2020-03-03       Impact factor: 3.169

10.  The Interplay between Wnt Mediated Expansion and Negative Regulation of Growth Promotes Robust Intestinal Crypt Structure and Homeostasis.

Authors:  Huijing Du; Qing Nie; William R Holmes
Journal:  PLoS Comput Biol       Date:  2015-08-19       Impact factor: 4.475

  10 in total

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