| Literature DB >> 24046702 |
Qinyong Mao1, Dennis K Taylor, Seik Weng Ng, Edward R T Tiekink.
Abstract
The entire mol-ecule of pallidol hexa-acetate {systematic name: (±)-(4bR,5R,9bR,10R)-5,10-bis-[4-(acet-yloxy)phen-yl]-4b,5,9b,10-tetra-hydro-indeno-[2,1-a]indene-1,3,6,8-tetrayl tetra-acetate} is completed by the application of twofold rotational symmetry in the title ethyl acetate solvate, C40H34O12·C4H8O2. The ethyl acetate mol-ecule was highly disordered and was treated with the SQUEEZE routine [Spek (2009 ▶). Acta Cryst. D65, 148-155]; the crystallographic data take into account the presence of the solvent. In pallidol hexa-acetate, the dihedral angle between the fused five-membered rings (r.m.s. deviation = 0.100 Å) is 54.73 (6)°, indicating a significant fold in the mol-ecule. Significant twists between residues are also evident as seen in the dihedral angle of 80.70 (5)° between the five-membered ring and the pendent benzene ring to which it is attached. Similarly, the acetate residues are twisted with respect to the benzene ring to which they are attached [C-O(carb-oxy)-C-C torsion angles = -70.24 (14), -114.43 (10) and -72.54 (13)°]. In the crystal, a three-dimensional architecture is sustained by C-H⋯O inter-actions which encompass channels in which the disordered ethyl acetate mol-ecules reside.Entities:
Year: 2013 PMID: 24046702 PMCID: PMC3770417 DOI: 10.1107/S160053681301708X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C40H34O12·C4H8O2 | |
| Monoclinic, | Cu |
| Hall symbol: -C 2yc | Cell parameters from 19786 reflections |
| θ = 3.7–74.3° | |
| µ = 0.83 mm−1 | |
| β = 97.186 (1)° | Prism, colourless |
| 0.30 × 0.10 × 0.10 mm | |
| Agilent SuperNova Dual diffractometer with an Atlas detector | 4029 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 3714 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.4041 pixels mm-1 | θmax = 74.4°, θmin = 3.7° |
| ω scan | |
| Absorption correction: multi-scan ( | |
| 27173 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 4029 reflections | (Δ/σ)max = 0.001 |
| 238 parameters | Δρmax = 0.21 e Å−3 |
| 0 restraints | Δρmin = −0.22 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| O1 | 0.23221 (6) | 0.46511 (7) | 0.48061 (3) | 0.0295 (2) | |
| O2 | 0.35408 (8) | 0.41673 (8) | 0.54965 (4) | 0.0408 (2) | |
| O3 | 0.56127 (6) | 0.19610 (6) | 0.42147 (3) | 0.02298 (17) | |
| O4 | 0.63350 (6) | 0.31813 (7) | 0.48240 (3) | 0.02886 (19) | |
| O5 | 0.88454 (6) | 0.23900 (7) | 0.35088 (3) | 0.02608 (19) | |
| O6 | 0.86993 (7) | 0.10847 (7) | 0.28727 (4) | 0.0331 (2) | |
| C1 | 0.20807 (11) | 0.51331 (11) | 0.57260 (5) | 0.0374 (3) | |
| H1A | 0.2441 | 0.5165 | 0.6108 | 0.056* | |
| H1B | 0.1442 | 0.4737 | 0.5727 | 0.056* | |
| H1C | 0.1924 | 0.5846 | 0.5589 | 0.056* | |
| C2 | 0.27454 (9) | 0.46003 (9) | 0.53515 (5) | 0.0287 (3) | |
| C3 | 0.28958 (8) | 0.41950 (9) | 0.44109 (4) | 0.0244 (2) | |
| C4 | 0.37948 (8) | 0.46632 (9) | 0.42947 (4) | 0.0238 (2) | |
| H4 | 0.4048 | 0.5278 | 0.4489 | 0.029* | |
| C5 | 0.43189 (8) | 0.42139 (8) | 0.38878 (4) | 0.0215 (2) | |
| H5 | 0.4939 | 0.4526 | 0.3805 | 0.026* | |
| C6 | 0.39535 (8) | 0.33136 (8) | 0.35982 (4) | 0.0194 (2) | |
| C7 | 0.30498 (8) | 0.28622 (9) | 0.37288 (4) | 0.0238 (2) | |
| H7 | 0.2793 | 0.2248 | 0.3536 | 0.029* | |
| C8 | 0.25172 (8) | 0.32971 (10) | 0.41377 (5) | 0.0270 (2) | |
| H8 | 0.1904 | 0.2982 | 0.4227 | 0.032* | |
| C9 | 0.45295 (8) | 0.28440 (8) | 0.31499 (4) | 0.0184 (2) | |
| H9 | 0.4240 | 0.2132 | 0.3052 | 0.022* | |
| C10 | 0.44581 (7) | 0.35182 (8) | 0.25998 (4) | 0.0185 (2) | |
| H10 | 0.4247 | 0.4252 | 0.2678 | 0.022* | |
| C11 | 0.56755 (8) | 0.27379 (8) | 0.33139 (4) | 0.0188 (2) | |
| C12 | 0.62362 (8) | 0.30738 (8) | 0.28902 (4) | 0.0191 (2) | |
| C13 | 0.72954 (8) | 0.29618 (8) | 0.29446 (4) | 0.0218 (2) | |
| H13 | 0.7679 | 0.3192 | 0.2658 | 0.026* | |
| C14 | 0.77742 (8) | 0.25032 (9) | 0.34309 (4) | 0.0220 (2) | |
| C15 | 0.72490 (8) | 0.21823 (8) | 0.38658 (4) | 0.0218 (2) | |
| H15 | 0.7599 | 0.1880 | 0.4197 | 0.026* | |
| C16 | 0.61939 (8) | 0.23177 (8) | 0.38003 (4) | 0.0207 (2) | |
| C17 | 0.57259 (8) | 0.24896 (9) | 0.47149 (4) | 0.0229 (2) | |
| C18 | 0.49717 (9) | 0.20992 (11) | 0.50834 (5) | 0.0318 (3) | |
| H18A | 0.5242 | 0.2217 | 0.5477 | 0.048* | |
| H18B | 0.4856 | 0.1347 | 0.5019 | 0.048* | |
| H18C | 0.4322 | 0.2477 | 0.4996 | 0.048* | |
| C19 | 0.92348 (9) | 0.16363 (9) | 0.31875 (4) | 0.0255 (2) | |
| C20 | 1.03744 (9) | 0.16233 (11) | 0.32956 (5) | 0.0334 (3) | |
| H20A | 1.0641 | 0.1074 | 0.3068 | 0.050* | |
| H20B | 1.0589 | 0.1480 | 0.3694 | 0.050* | |
| H20C | 1.0643 | 0.2306 | 0.3197 | 0.050* |
| O1 | 0.0263 (4) | 0.0399 (5) | 0.0223 (4) | 0.0058 (3) | 0.0037 (3) | −0.0057 (3) |
| O2 | 0.0498 (6) | 0.0482 (6) | 0.0237 (4) | 0.0166 (5) | 0.0015 (4) | 0.0032 (4) |
| O3 | 0.0252 (4) | 0.0263 (4) | 0.0168 (3) | −0.0011 (3) | 0.0004 (3) | 0.0028 (3) |
| O4 | 0.0302 (4) | 0.0337 (4) | 0.0223 (4) | −0.0028 (3) | 0.0017 (3) | −0.0036 (3) |
| O5 | 0.0180 (4) | 0.0374 (5) | 0.0217 (4) | 0.0034 (3) | −0.0021 (3) | −0.0062 (3) |
| O6 | 0.0350 (5) | 0.0312 (4) | 0.0323 (4) | 0.0066 (4) | 0.0001 (3) | −0.0058 (4) |
| C1 | 0.0450 (7) | 0.0404 (7) | 0.0289 (6) | −0.0006 (6) | 0.0127 (5) | −0.0086 (5) |
| C2 | 0.0362 (6) | 0.0282 (6) | 0.0221 (5) | −0.0005 (5) | 0.0055 (5) | −0.0006 (4) |
| C3 | 0.0235 (5) | 0.0311 (6) | 0.0185 (5) | 0.0061 (4) | 0.0020 (4) | −0.0013 (4) |
| C4 | 0.0260 (5) | 0.0242 (5) | 0.0201 (5) | 0.0012 (4) | −0.0013 (4) | −0.0026 (4) |
| C5 | 0.0219 (5) | 0.0220 (5) | 0.0202 (5) | −0.0012 (4) | 0.0013 (4) | 0.0008 (4) |
| C6 | 0.0195 (5) | 0.0219 (5) | 0.0159 (5) | 0.0017 (4) | −0.0015 (4) | 0.0018 (4) |
| C7 | 0.0221 (5) | 0.0264 (5) | 0.0222 (5) | −0.0031 (4) | −0.0004 (4) | −0.0031 (4) |
| C8 | 0.0203 (5) | 0.0359 (6) | 0.0247 (5) | −0.0022 (4) | 0.0025 (4) | −0.0012 (5) |
| C9 | 0.0205 (5) | 0.0173 (5) | 0.0167 (5) | −0.0008 (4) | −0.0009 (4) | 0.0004 (4) |
| C10 | 0.0205 (5) | 0.0172 (5) | 0.0172 (5) | 0.0009 (4) | 0.0003 (4) | 0.0005 (4) |
| C11 | 0.0206 (5) | 0.0165 (5) | 0.0186 (5) | 0.0005 (4) | 0.0002 (4) | −0.0015 (4) |
| C12 | 0.0215 (5) | 0.0182 (5) | 0.0167 (5) | −0.0010 (4) | −0.0011 (4) | −0.0023 (4) |
| C13 | 0.0223 (5) | 0.0251 (5) | 0.0179 (5) | −0.0013 (4) | 0.0017 (4) | −0.0034 (4) |
| C14 | 0.0179 (5) | 0.0260 (5) | 0.0209 (5) | 0.0014 (4) | −0.0023 (4) | −0.0058 (4) |
| C15 | 0.0242 (5) | 0.0227 (5) | 0.0172 (5) | 0.0032 (4) | −0.0025 (4) | −0.0024 (4) |
| C16 | 0.0241 (5) | 0.0202 (5) | 0.0172 (5) | 0.0003 (4) | 0.0012 (4) | −0.0005 (4) |
| C17 | 0.0240 (5) | 0.0270 (5) | 0.0166 (5) | 0.0054 (4) | −0.0014 (4) | 0.0028 (4) |
| C18 | 0.0305 (6) | 0.0432 (7) | 0.0220 (5) | 0.0002 (5) | 0.0043 (4) | 0.0066 (5) |
| C19 | 0.0282 (6) | 0.0289 (6) | 0.0193 (5) | 0.0082 (4) | 0.0026 (4) | 0.0045 (4) |
| C20 | 0.0254 (6) | 0.0429 (7) | 0.0321 (6) | 0.0093 (5) | 0.0044 (5) | 0.0073 (5) |
| O1—C2 | 1.3603 (14) | C9—C11 | 1.5152 (14) |
| O1—C3 | 1.4103 (13) | C9—C10 | 1.5697 (13) |
| O2—C2 | 1.1953 (15) | C9—H9 | 1.0000 |
| O3—C17 | 1.3700 (13) | C10—C12i | 1.5076 (14) |
| O3—C16 | 1.4049 (13) | C10—C10i | 1.560 (2) |
| O4—C17 | 1.1978 (14) | C10—H10 | 1.0000 |
| O5—C19 | 1.3712 (13) | C11—C16 | 1.3854 (14) |
| O5—C14 | 1.4050 (13) | C11—C12 | 1.3972 (14) |
| O6—C19 | 1.1955 (14) | C12—C13 | 1.3900 (15) |
| C1—C2 | 1.4941 (16) | C12—C10i | 1.5076 (13) |
| C1—H1A | 0.9800 | C13—C14 | 1.3857 (15) |
| C1—H1B | 0.9800 | C13—H13 | 0.9500 |
| C1—H1C | 0.9800 | C14—C15 | 1.3849 (15) |
| C3—C8 | 1.3807 (16) | C15—C16 | 1.3873 (15) |
| C3—C4 | 1.3835 (16) | C15—H15 | 0.9500 |
| C4—C5 | 1.3886 (15) | C17—C18 | 1.4951 (15) |
| C4—H4 | 0.9500 | C18—H18A | 0.9800 |
| C5—C6 | 1.3957 (15) | C18—H18B | 0.9800 |
| C5—H5 | 0.9500 | C18—H18C | 0.9800 |
| C6—C7 | 1.3910 (15) | C19—C20 | 1.4886 (16) |
| C6—C9 | 1.5158 (14) | C20—H20A | 0.9800 |
| C7—C8 | 1.3915 (15) | C20—H20B | 0.9800 |
| C7—H7 | 0.9500 | C20—H20C | 0.9800 |
| C8—H8 | 0.9500 | ||
| C2—O1—C3 | 116.15 (9) | C12i—C10—H10 | 110.1 |
| C17—O3—C16 | 117.01 (8) | C10i—C10—H10 | 110.1 |
| C19—O5—C14 | 115.82 (8) | C9—C10—H10 | 110.1 |
| C2—C1—H1A | 109.5 | C16—C11—C12 | 119.00 (9) |
| C2—C1—H1B | 109.5 | C16—C11—C9 | 128.50 (9) |
| H1A—C1—H1B | 109.5 | C12—C11—C9 | 112.41 (9) |
| C2—C1—H1C | 109.5 | C13—C12—C11 | 120.93 (9) |
| H1A—C1—H1C | 109.5 | C13—C12—C10i | 127.87 (9) |
| H1B—C1—H1C | 109.5 | C11—C12—C10i | 111.20 (9) |
| O2—C2—O1 | 122.74 (11) | C14—C13—C12 | 117.83 (10) |
| O2—C2—C1 | 126.19 (11) | C14—C13—H13 | 121.1 |
| O1—C2—C1 | 111.06 (10) | C12—C13—H13 | 121.1 |
| C8—C3—C4 | 121.86 (10) | C15—C14—C13 | 122.99 (10) |
| C8—C3—O1 | 118.07 (10) | C15—C14—O5 | 117.09 (9) |
| C4—C3—O1 | 120.05 (10) | C13—C14—O5 | 119.86 (10) |
| C3—C4—C5 | 118.44 (10) | C14—C15—C16 | 117.63 (10) |
| C3—C4—H4 | 120.8 | C14—C15—H15 | 121.2 |
| C5—C4—H4 | 120.8 | C16—C15—H15 | 121.2 |
| C4—C5—C6 | 121.34 (10) | C11—C16—C15 | 121.55 (10) |
| C4—C5—H5 | 119.3 | C11—C16—O3 | 118.01 (9) |
| C6—C5—H5 | 119.3 | C15—C16—O3 | 120.29 (9) |
| C7—C6—C5 | 118.55 (10) | O4—C17—O3 | 123.38 (10) |
| C7—C6—C9 | 120.94 (9) | O4—C17—C18 | 126.17 (10) |
| C5—C6—C9 | 120.51 (9) | O3—C17—C18 | 110.43 (10) |
| C6—C7—C8 | 120.95 (10) | C17—C18—H18A | 109.5 |
| C6—C7—H7 | 119.5 | C17—C18—H18B | 109.5 |
| C8—C7—H7 | 119.5 | H18A—C18—H18B | 109.5 |
| C3—C8—C7 | 118.86 (10) | C17—C18—H18C | 109.5 |
| C3—C8—H8 | 120.6 | H18A—C18—H18C | 109.5 |
| C7—C8—H8 | 120.6 | H18B—C18—H18C | 109.5 |
| C11—C9—C6 | 114.79 (8) | O6—C19—O5 | 122.45 (10) |
| C11—C9—C10 | 102.76 (8) | O6—C19—C20 | 127.18 (11) |
| C6—C9—C10 | 113.59 (8) | O5—C19—C20 | 110.37 (10) |
| C11—C9—H9 | 108.5 | C19—C20—H20A | 109.5 |
| C6—C9—H9 | 108.5 | C19—C20—H20B | 109.5 |
| C10—C9—H9 | 108.5 | H20A—C20—H20B | 109.5 |
| C12i—C10—C10i | 104.29 (9) | C19—C20—H20C | 109.5 |
| C12i—C10—C9 | 114.78 (8) | H20A—C20—H20C | 109.5 |
| C10i—C10—C9 | 107.37 (8) | H20B—C20—H20C | 109.5 |
| C3—O1—C2—O2 | −2.36 (17) | C10—C9—C11—C12 | −11.21 (11) |
| C3—O1—C2—C1 | 178.50 (10) | C16—C11—C12—C13 | 1.96 (15) |
| C2—O1—C3—C8 | 111.57 (12) | C9—C11—C12—C13 | −174.97 (9) |
| C2—O1—C3—C4 | −70.24 (14) | C16—C11—C12—C10i | −179.25 (9) |
| C8—C3—C4—C5 | 0.54 (17) | C9—C11—C12—C10i | 3.83 (12) |
| O1—C3—C4—C5 | −177.59 (9) | C11—C12—C13—C14 | 0.27 (15) |
| C3—C4—C5—C6 | 0.24 (16) | C10i—C12—C13—C14 | −178.31 (10) |
| C4—C5—C6—C7 | −0.59 (15) | C12—C13—C14—C15 | −1.81 (16) |
| C4—C5—C6—C9 | 179.16 (9) | C12—C13—C14—O5 | −178.90 (9) |
| C5—C6—C7—C8 | 0.18 (16) | C19—O5—C14—C15 | 110.20 (11) |
| C9—C6—C7—C8 | −179.57 (9) | C19—O5—C14—C13 | −72.54 (13) |
| C4—C3—C8—C7 | −0.94 (17) | C13—C14—C15—C16 | 1.04 (16) |
| O1—C3—C8—C7 | 177.22 (10) | O5—C14—C15—C16 | 178.20 (9) |
| C6—C7—C8—C3 | 0.57 (17) | C12—C11—C16—C15 | −2.79 (15) |
| C7—C6—C9—C11 | −133.77 (10) | C9—C11—C16—C15 | 173.58 (10) |
| C5—C6—C9—C11 | 46.49 (13) | C12—C11—C16—O3 | −178.43 (9) |
| C7—C6—C9—C10 | 108.39 (11) | C9—C11—C16—O3 | −2.06 (16) |
| C5—C6—C9—C10 | −71.36 (12) | C14—C15—C16—C11 | 1.32 (16) |
| C11—C9—C10—C12i | 129.45 (9) | C14—C15—C16—O3 | 176.87 (9) |
| C6—C9—C10—C12i | −105.94 (10) | C17—O3—C16—C11 | −114.43 (10) |
| C11—C9—C10—C10i | 14.02 (9) | C17—O3—C16—C15 | 69.87 (13) |
| C6—C9—C10—C10i | 138.64 (8) | C16—O3—C17—O4 | −5.04 (15) |
| C6—C9—C11—C16 | 48.41 (14) | C16—O3—C17—C18 | 173.34 (9) |
| C10—C9—C11—C16 | 172.23 (10) | C14—O5—C19—O6 | −2.25 (15) |
| C6—C9—C11—C12 | −135.02 (9) | C14—O5—C19—C20 | 178.01 (9) |
| H··· | ||||
| C10—H10···O6ii | 1.00 | 2.51 | 3.5053 (14) | 179 |
| C15—H15···O4iii | 0.95 | 2.59 | 3.4834 (12) | 158 |
| C20—H20 | 0.98 | 2.52 | 3.2708 (15) | 133 |
| C20—H20 | 0.98 | 2.28 | 3.2318 (16) | 162 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C10—H10⋯O6i | 1.00 | 2.51 | 3.5053 (14) | 179 |
| C15—H15⋯O4ii | 0.95 | 2.59 | 3.4834 (12) | 158 |
| C20—H20 | 0.98 | 2.52 | 3.2708 (15) | 133 |
| C20—H20 | 0.98 | 2.28 | 3.2318 (16) | 162 |
Symmetry codes: (i) ; (ii) ; (iii) .