Literature DB >> 24046702

Pallidol hexa-acetate ethyl acetate monosolvate.

Qinyong Mao1, Dennis K Taylor, Seik Weng Ng, Edward R T Tiekink.   

Abstract

The entire mol-ecule of pallidol hexa-acetate {systematic name: (±)-(4bR,5R,9bR,10R)-5,10-bis-[4-(acet-yloxy)phen-yl]-4b,5,9b,10-tetra-hydro-indeno-[2,1-a]indene-1,3,6,8-tetrayl tetra-acetate} is completed by the application of twofold rotational symmetry in the title ethyl acetate solvate, C40H34O12·C4H8O2. The ethyl acetate mol-ecule was highly disordered and was treated with the SQUEEZE routine [Spek (2009 ▶). Acta Cryst. D65, 148-155]; the crystallographic data take into account the presence of the solvent. In pallidol hexa-acetate, the dihedral angle between the fused five-membered rings (r.m.s. deviation = 0.100 Å) is 54.73 (6)°, indicating a significant fold in the mol-ecule. Significant twists between residues are also evident as seen in the dihedral angle of 80.70 (5)° between the five-membered ring and the pendent benzene ring to which it is attached. Similarly, the acetate residues are twisted with respect to the benzene ring to which they are attached [C-O(carb-oxy)-C-C torsion angles = -70.24 (14), -114.43 (10) and -72.54 (13)°]. In the crystal, a three-dimensional architecture is sustained by C-H⋯O inter-actions which encompass channels in which the disordered ethyl acetate mol-ecules reside.

Entities:  

Year:  2013        PMID: 24046702      PMCID: PMC3770417          DOI: 10.1107/S160053681301708X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For synthetic protocols, see: Takaya et al. (2005 ▶); Moss et al. (2013 ▶). For the spectroscopic characteristics of pallidol hexa­acetate, see: Khan et al. (1986 ▶).

Experimental

Crystal data

C40H34O12·C4H8O2 M = 794.78 Monoclinic, a = 13.1495 (1) Å b = 12.7439 (1) Å c = 24.0386 (2) Å β = 97.186 (1)° V = 3996.65 (5) Å3 Z = 4 Cu Kα radiation μ = 0.83 mm−1 T = 100 K 0.30 × 0.10 × 0.10 mm

Data collection

Agilent SuperNova Dual diffractometer with an Atlas detector Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▶) T min = 0.790, T max = 0.922 27173 measured reflections 4029 independent reflections 3714 reflections with I > 2σ(I) R int = 0.022

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.095 S = 1.02 4029 reflections 238 parameters H-atom parameters constrained Δρmax = 0.21 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrysAlis PRO (Agilent, 2013 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681301708X/su2614sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301708X/su2614Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301708X/su2614Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C40H34O12·C4H8O2F(000) = 1672
Mr = 794.78Dx = 1.321 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -C 2ycCell parameters from 19786 reflections
a = 13.1495 (1) Åθ = 3.7–74.3°
b = 12.7439 (1) ŵ = 0.83 mm1
c = 24.0386 (2) ÅT = 100 K
β = 97.186 (1)°Prism, colourless
V = 3996.65 (5) Å30.30 × 0.10 × 0.10 mm
Z = 4
Agilent SuperNova Dual diffractometer with an Atlas detector4029 independent reflections
Radiation source: SuperNova (Cu) X-ray Source3714 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.022
Detector resolution: 10.4041 pixels mm-1θmax = 74.4°, θmin = 3.7°
ω scanh = −16→15
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = 0→15
Tmin = 0.790, Tmax = 0.922l = 0→29
27173 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.095H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0505P)2 + 2.699P] where P = (Fo2 + 2Fc2)/3
4029 reflections(Δ/σ)max = 0.001
238 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.23221 (6)0.46511 (7)0.48061 (3)0.0295 (2)
O20.35408 (8)0.41673 (8)0.54965 (4)0.0408 (2)
O30.56127 (6)0.19610 (6)0.42147 (3)0.02298 (17)
O40.63350 (6)0.31813 (7)0.48240 (3)0.02886 (19)
O50.88454 (6)0.23900 (7)0.35088 (3)0.02608 (19)
O60.86993 (7)0.10847 (7)0.28727 (4)0.0331 (2)
C10.20807 (11)0.51331 (11)0.57260 (5)0.0374 (3)
H1A0.24410.51650.61080.056*
H1B0.14420.47370.57270.056*
H1C0.19240.58460.55890.056*
C20.27454 (9)0.46003 (9)0.53515 (5)0.0287 (3)
C30.28958 (8)0.41950 (9)0.44109 (4)0.0244 (2)
C40.37948 (8)0.46632 (9)0.42947 (4)0.0238 (2)
H40.40480.52780.44890.029*
C50.43189 (8)0.42139 (8)0.38878 (4)0.0215 (2)
H50.49390.45260.38050.026*
C60.39535 (8)0.33136 (8)0.35982 (4)0.0194 (2)
C70.30498 (8)0.28622 (9)0.37288 (4)0.0238 (2)
H70.27930.22480.35360.029*
C80.25172 (8)0.32971 (10)0.41377 (5)0.0270 (2)
H80.19040.29820.42270.032*
C90.45295 (8)0.28440 (8)0.31499 (4)0.0184 (2)
H90.42400.21320.30520.022*
C100.44581 (7)0.35182 (8)0.25998 (4)0.0185 (2)
H100.42470.42520.26780.022*
C110.56755 (8)0.27379 (8)0.33139 (4)0.0188 (2)
C120.62362 (8)0.30738 (8)0.28902 (4)0.0191 (2)
C130.72954 (8)0.29618 (8)0.29446 (4)0.0218 (2)
H130.76790.31920.26580.026*
C140.77742 (8)0.25032 (9)0.34309 (4)0.0220 (2)
C150.72490 (8)0.21823 (8)0.38658 (4)0.0218 (2)
H150.75990.18800.41970.026*
C160.61939 (8)0.23177 (8)0.38003 (4)0.0207 (2)
C170.57259 (8)0.24896 (9)0.47149 (4)0.0229 (2)
C180.49717 (9)0.20992 (11)0.50834 (5)0.0318 (3)
H18A0.52420.22170.54770.048*
H18B0.48560.13470.50190.048*
H18C0.43220.24770.49960.048*
C190.92348 (9)0.16363 (9)0.31875 (4)0.0255 (2)
C201.03744 (9)0.16233 (11)0.32956 (5)0.0334 (3)
H20A1.06410.10740.30680.050*
H20B1.05890.14800.36940.050*
H20C1.06430.23060.31970.050*
U11U22U33U12U13U23
O10.0263 (4)0.0399 (5)0.0223 (4)0.0058 (3)0.0037 (3)−0.0057 (3)
O20.0498 (6)0.0482 (6)0.0237 (4)0.0166 (5)0.0015 (4)0.0032 (4)
O30.0252 (4)0.0263 (4)0.0168 (3)−0.0011 (3)0.0004 (3)0.0028 (3)
O40.0302 (4)0.0337 (4)0.0223 (4)−0.0028 (3)0.0017 (3)−0.0036 (3)
O50.0180 (4)0.0374 (5)0.0217 (4)0.0034 (3)−0.0021 (3)−0.0062 (3)
O60.0350 (5)0.0312 (4)0.0323 (4)0.0066 (4)0.0001 (3)−0.0058 (4)
C10.0450 (7)0.0404 (7)0.0289 (6)−0.0006 (6)0.0127 (5)−0.0086 (5)
C20.0362 (6)0.0282 (6)0.0221 (5)−0.0005 (5)0.0055 (5)−0.0006 (4)
C30.0235 (5)0.0311 (6)0.0185 (5)0.0061 (4)0.0020 (4)−0.0013 (4)
C40.0260 (5)0.0242 (5)0.0201 (5)0.0012 (4)−0.0013 (4)−0.0026 (4)
C50.0219 (5)0.0220 (5)0.0202 (5)−0.0012 (4)0.0013 (4)0.0008 (4)
C60.0195 (5)0.0219 (5)0.0159 (5)0.0017 (4)−0.0015 (4)0.0018 (4)
C70.0221 (5)0.0264 (5)0.0222 (5)−0.0031 (4)−0.0004 (4)−0.0031 (4)
C80.0203 (5)0.0359 (6)0.0247 (5)−0.0022 (4)0.0025 (4)−0.0012 (5)
C90.0205 (5)0.0173 (5)0.0167 (5)−0.0008 (4)−0.0009 (4)0.0004 (4)
C100.0205 (5)0.0172 (5)0.0172 (5)0.0009 (4)0.0003 (4)0.0005 (4)
C110.0206 (5)0.0165 (5)0.0186 (5)0.0005 (4)0.0002 (4)−0.0015 (4)
C120.0215 (5)0.0182 (5)0.0167 (5)−0.0010 (4)−0.0011 (4)−0.0023 (4)
C130.0223 (5)0.0251 (5)0.0179 (5)−0.0013 (4)0.0017 (4)−0.0034 (4)
C140.0179 (5)0.0260 (5)0.0209 (5)0.0014 (4)−0.0023 (4)−0.0058 (4)
C150.0242 (5)0.0227 (5)0.0172 (5)0.0032 (4)−0.0025 (4)−0.0024 (4)
C160.0241 (5)0.0202 (5)0.0172 (5)0.0003 (4)0.0012 (4)−0.0005 (4)
C170.0240 (5)0.0270 (5)0.0166 (5)0.0054 (4)−0.0014 (4)0.0028 (4)
C180.0305 (6)0.0432 (7)0.0220 (5)0.0002 (5)0.0043 (4)0.0066 (5)
C190.0282 (6)0.0289 (6)0.0193 (5)0.0082 (4)0.0026 (4)0.0045 (4)
C200.0254 (6)0.0429 (7)0.0321 (6)0.0093 (5)0.0044 (5)0.0073 (5)
O1—C21.3603 (14)C9—C111.5152 (14)
O1—C31.4103 (13)C9—C101.5697 (13)
O2—C21.1953 (15)C9—H91.0000
O3—C171.3700 (13)C10—C12i1.5076 (14)
O3—C161.4049 (13)C10—C10i1.560 (2)
O4—C171.1978 (14)C10—H101.0000
O5—C191.3712 (13)C11—C161.3854 (14)
O5—C141.4050 (13)C11—C121.3972 (14)
O6—C191.1955 (14)C12—C131.3900 (15)
C1—C21.4941 (16)C12—C10i1.5076 (13)
C1—H1A0.9800C13—C141.3857 (15)
C1—H1B0.9800C13—H130.9500
C1—H1C0.9800C14—C151.3849 (15)
C3—C81.3807 (16)C15—C161.3873 (15)
C3—C41.3835 (16)C15—H150.9500
C4—C51.3886 (15)C17—C181.4951 (15)
C4—H40.9500C18—H18A0.9800
C5—C61.3957 (15)C18—H18B0.9800
C5—H50.9500C18—H18C0.9800
C6—C71.3910 (15)C19—C201.4886 (16)
C6—C91.5158 (14)C20—H20A0.9800
C7—C81.3915 (15)C20—H20B0.9800
C7—H70.9500C20—H20C0.9800
C8—H80.9500
C2—O1—C3116.15 (9)C12i—C10—H10110.1
C17—O3—C16117.01 (8)C10i—C10—H10110.1
C19—O5—C14115.82 (8)C9—C10—H10110.1
C2—C1—H1A109.5C16—C11—C12119.00 (9)
C2—C1—H1B109.5C16—C11—C9128.50 (9)
H1A—C1—H1B109.5C12—C11—C9112.41 (9)
C2—C1—H1C109.5C13—C12—C11120.93 (9)
H1A—C1—H1C109.5C13—C12—C10i127.87 (9)
H1B—C1—H1C109.5C11—C12—C10i111.20 (9)
O2—C2—O1122.74 (11)C14—C13—C12117.83 (10)
O2—C2—C1126.19 (11)C14—C13—H13121.1
O1—C2—C1111.06 (10)C12—C13—H13121.1
C8—C3—C4121.86 (10)C15—C14—C13122.99 (10)
C8—C3—O1118.07 (10)C15—C14—O5117.09 (9)
C4—C3—O1120.05 (10)C13—C14—O5119.86 (10)
C3—C4—C5118.44 (10)C14—C15—C16117.63 (10)
C3—C4—H4120.8C14—C15—H15121.2
C5—C4—H4120.8C16—C15—H15121.2
C4—C5—C6121.34 (10)C11—C16—C15121.55 (10)
C4—C5—H5119.3C11—C16—O3118.01 (9)
C6—C5—H5119.3C15—C16—O3120.29 (9)
C7—C6—C5118.55 (10)O4—C17—O3123.38 (10)
C7—C6—C9120.94 (9)O4—C17—C18126.17 (10)
C5—C6—C9120.51 (9)O3—C17—C18110.43 (10)
C6—C7—C8120.95 (10)C17—C18—H18A109.5
C6—C7—H7119.5C17—C18—H18B109.5
C8—C7—H7119.5H18A—C18—H18B109.5
C3—C8—C7118.86 (10)C17—C18—H18C109.5
C3—C8—H8120.6H18A—C18—H18C109.5
C7—C8—H8120.6H18B—C18—H18C109.5
C11—C9—C6114.79 (8)O6—C19—O5122.45 (10)
C11—C9—C10102.76 (8)O6—C19—C20127.18 (11)
C6—C9—C10113.59 (8)O5—C19—C20110.37 (10)
C11—C9—H9108.5C19—C20—H20A109.5
C6—C9—H9108.5C19—C20—H20B109.5
C10—C9—H9108.5H20A—C20—H20B109.5
C12i—C10—C10i104.29 (9)C19—C20—H20C109.5
C12i—C10—C9114.78 (8)H20A—C20—H20C109.5
C10i—C10—C9107.37 (8)H20B—C20—H20C109.5
C3—O1—C2—O2−2.36 (17)C10—C9—C11—C12−11.21 (11)
C3—O1—C2—C1178.50 (10)C16—C11—C12—C131.96 (15)
C2—O1—C3—C8111.57 (12)C9—C11—C12—C13−174.97 (9)
C2—O1—C3—C4−70.24 (14)C16—C11—C12—C10i−179.25 (9)
C8—C3—C4—C50.54 (17)C9—C11—C12—C10i3.83 (12)
O1—C3—C4—C5−177.59 (9)C11—C12—C13—C140.27 (15)
C3—C4—C5—C60.24 (16)C10i—C12—C13—C14−178.31 (10)
C4—C5—C6—C7−0.59 (15)C12—C13—C14—C15−1.81 (16)
C4—C5—C6—C9179.16 (9)C12—C13—C14—O5−178.90 (9)
C5—C6—C7—C80.18 (16)C19—O5—C14—C15110.20 (11)
C9—C6—C7—C8−179.57 (9)C19—O5—C14—C13−72.54 (13)
C4—C3—C8—C7−0.94 (17)C13—C14—C15—C161.04 (16)
O1—C3—C8—C7177.22 (10)O5—C14—C15—C16178.20 (9)
C6—C7—C8—C30.57 (17)C12—C11—C16—C15−2.79 (15)
C7—C6—C9—C11−133.77 (10)C9—C11—C16—C15173.58 (10)
C5—C6—C9—C1146.49 (13)C12—C11—C16—O3−178.43 (9)
C7—C6—C9—C10108.39 (11)C9—C11—C16—O3−2.06 (16)
C5—C6—C9—C10−71.36 (12)C14—C15—C16—C111.32 (16)
C11—C9—C10—C12i129.45 (9)C14—C15—C16—O3176.87 (9)
C6—C9—C10—C12i−105.94 (10)C17—O3—C16—C11−114.43 (10)
C11—C9—C10—C10i14.02 (9)C17—O3—C16—C1569.87 (13)
C6—C9—C10—C10i138.64 (8)C16—O3—C17—O4−5.04 (15)
C6—C9—C11—C1648.41 (14)C16—O3—C17—C18173.34 (9)
C10—C9—C11—C16172.23 (10)C14—O5—C19—O6−2.25 (15)
C6—C9—C11—C12−135.02 (9)C14—O5—C19—C20178.01 (9)
D—H···AD—HH···AD···AD—H···A
C10—H10···O6ii1.002.513.5053 (14)179
C15—H15···O4iii0.952.593.4834 (12)158
C20—H20A···O6iv0.982.523.2708 (15)133
C20—H20B···O2iii0.982.283.2318 (16)162
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C10—H10⋯O6i 1.002.513.5053 (14)179
C15—H15⋯O4ii 0.952.593.4834 (12)158
C20—H20A⋯O6iii 0.982.523.2708 (15)133
C20—H20B⋯O2ii 0.982.283.2318 (16)162

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Investigation of monomeric and oligomeric wine stilbenoids in red wines by ultra-high-performance liquid chromatography/electrospray ionization quadrupole time-of-flight mass spectrometry.

Authors:  Ryan Moss; Qinyong Mao; Dennis Taylor; Cédric Saucier
Journal:  Rapid Commun Mass Spectrom       Date:  2013-08-30       Impact factor: 2.419

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.