Literature DB >> 24046695

1,5-Bis(2-meth-oxy-benzyl-idene)thio-carbonohydrazide methanol monosolvate.

Jianfeng Yu1, Shiming Tang, Jingbin Zeng, Zifeng Yan.   

Abstract

The title compound, C17H18N4O2S·CH3OH, was synthesized by the condensation reaction of o-meth-oxy-benzaldehyde with thio-carbohydrazide in methanol. The two benzene rings are inclined each to other at 31.7 (1)°. Inter-molecular N-H⋯O and bifurcated O-H⋯N(S) hydrogen bonds link two thio-carbonohydrazide and two solvent mol-ecules into a centrosymmetric unit. These units, related by translation along the b axis, are further aggregated into columns through N-H⋯S hydrogen bonds.

Entities:  

Year:  2013        PMID: 24046695      PMCID: PMC3770410          DOI: 10.1107/S1600536813016954

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activities of thio­carbohydrazides, see: Liang (2003 ▶); Bacchi et al. (2005 ▶). For the crystal structures of related compounds, see: Fang et al. (2006 ▶); Feng et al. (2011 ▶); Zhao (2011 ▶).

Experimental

Crystal data

C17H18N4O2S·CH4O M = 374.46 Triclinic, a = 7.7223 (15) Å b = 10.232 (2) Å c = 12.648 (3) Å α = 85.938 (3)° β = 80.796 (3)° γ = 79.550 (3)° V = 969.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.19 mm−1 T = 296 K 0.25 × 0.21 × 0.18 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.954, T max = 0.966 4769 measured reflections 3324 independent reflections 2766 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.171 S = 1.01 3324 reflections 240 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813016954/cv5415sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016954/cv5415Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813016954/cv5415Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H18N4O2S·CH4OZ = 2
Mr = 374.46F(000) = 396
Triclinic, P1Dx = 1.283 Mg m3
a = 7.7223 (15) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.232 (2) ÅCell parameters from 2955 reflections
c = 12.648 (3) Åθ = 3.0–28.1°
α = 85.938 (3)°µ = 0.19 mm1
β = 80.796 (3)°T = 296 K
γ = 79.550 (3)°Block, colourless
V = 969.3 (3) Å30.25 × 0.21 × 0.18 mm
Bruker SMART APEX CCD area-detector diffractometer3324 independent reflections
Radiation source: fine-focus sealed tube2766 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
phi and ω scansθmax = 25.0°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −8→9
Tmin = 0.954, Tmax = 0.966k = −9→12
4769 measured reflectionsl = −15→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.049H-atom parameters constrained
wR(F2) = 0.171w = 1/[σ2(Fo2) + (0.1P)2 + 0.3851P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max = 0.010
3324 reflectionsΔρmax = 0.20 e Å3
240 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.038 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.4120 (3)0.85311 (18)0.10378 (15)0.0503 (5)
H10.44970.92780.09420.060*
N20.3689 (3)0.80149 (19)0.20555 (15)0.0524 (5)
N30.3445 (2)0.66888 (17)0.04305 (15)0.0476 (5)
H3A0.33220.63950.10870.057*
N40.3114 (2)0.59365 (18)−0.03557 (15)0.0480 (5)
O10.2688 (4)1.0468 (2)0.44226 (17)0.1014 (9)
O20.1142 (3)0.27193 (17)0.08315 (18)0.0739 (6)
S10.43309 (9)0.85466 (6)−0.10545 (5)0.0567 (3)
C10.3953 (3)0.7867 (2)0.01844 (18)0.0438 (5)
C20.3709 (3)0.8750 (3)0.28184 (19)0.0574 (6)
H20.39720.96010.26660.069*
C30.3324 (4)0.8276 (3)0.3932 (2)0.0644 (7)
C40.3466 (6)0.6932 (3)0.4199 (3)0.0963 (11)
H40.38000.63190.36620.116*
C50.3117 (8)0.6491 (4)0.5254 (3)0.144 (2)
H50.32070.55850.54280.173*
C60.2634 (8)0.7397 (5)0.6049 (3)0.137 (2)
H60.23890.70980.67600.164*
C70.2510 (6)0.8722 (4)0.5809 (3)0.1038 (12)
H70.22140.93240.63540.125*
C80.2826 (4)0.9174 (3)0.4751 (2)0.0720 (7)
C90.2107 (7)1.1424 (4)0.5220 (3)0.1161 (15)
H9A0.09901.12740.56200.174*
H9B0.19621.23010.48850.174*
H9C0.29771.13460.56950.174*
C100.2413 (3)0.4934 (2)0.0006 (2)0.0487 (5)
H100.21920.47710.07440.058*
C110.1943 (3)0.4031 (2)−0.0700 (2)0.0543 (6)
C120.2091 (4)0.4269 (3)−0.1782 (2)0.0731 (8)
H120.25330.5019−0.20870.088*
C130.1593 (5)0.3415 (4)−0.2435 (3)0.0937 (11)
H130.16980.3585−0.31730.112*
C140.0940 (4)0.2309 (4)−0.1973 (3)0.0958 (12)
H140.05810.1741−0.24040.115*
C150.0809 (4)0.2032 (3)−0.0901 (3)0.0804 (9)
H150.03920.1268−0.06070.097*
C160.1297 (3)0.2888 (2)−0.0246 (3)0.0600 (7)
C170.0616 (5)0.1520 (3)0.1332 (4)0.0952 (11)
H17A−0.06180.15340.12900.143*
H17B0.07870.14580.20700.143*
H17C0.13260.07660.09700.143*
O30.3985 (3)0.4521 (2)0.22744 (16)0.0803 (6)
H30.46100.40090.18420.121*
C180.2837 (6)0.3838 (4)0.2970 (3)0.1132 (14)
H18A0.35170.31840.33930.170*
H18B0.21730.34060.25630.170*
H18C0.20310.44540.34340.170*
U11U22U33U12U13U23
N10.0627 (11)0.0401 (10)0.0515 (11)−0.0201 (8)−0.0034 (8)−0.0085 (8)
N20.0588 (11)0.0468 (10)0.0529 (11)−0.0149 (9)−0.0028 (8)−0.0086 (9)
N30.0554 (10)0.0389 (9)0.0514 (10)−0.0155 (8)−0.0049 (8)−0.0098 (8)
N40.0496 (10)0.0398 (9)0.0569 (11)−0.0113 (8)−0.0059 (8)−0.0129 (8)
O10.172 (2)0.0723 (14)0.0597 (12)−0.0446 (15)0.0175 (13)−0.0220 (10)
O20.0782 (12)0.0486 (10)0.1034 (16)−0.0266 (9)−0.0268 (11)0.0098 (10)
S10.0740 (4)0.0492 (4)0.0532 (4)−0.0275 (3)−0.0076 (3)−0.0062 (3)
C10.0403 (10)0.0361 (10)0.0555 (12)−0.0073 (8)−0.0049 (9)−0.0098 (9)
C20.0680 (14)0.0541 (13)0.0526 (13)−0.0203 (11)−0.0022 (11)−0.0106 (11)
C30.0760 (16)0.0634 (16)0.0527 (14)−0.0142 (13)−0.0024 (12)−0.0053 (12)
C40.140 (3)0.0634 (18)0.0710 (19)−0.0009 (19)0.0064 (19)−0.0020 (15)
C50.235 (6)0.077 (2)0.085 (3)0.015 (3)0.022 (3)0.022 (2)
C60.212 (5)0.102 (3)0.066 (2)0.021 (3)0.007 (3)0.017 (2)
C70.146 (3)0.101 (3)0.0549 (17)−0.007 (2)−0.0002 (19)−0.0093 (17)
C80.0876 (19)0.0748 (18)0.0527 (14)−0.0158 (15)−0.0034 (13)−0.0082 (13)
C90.188 (4)0.087 (2)0.074 (2)−0.047 (3)0.019 (2)−0.0335 (19)
C100.0453 (11)0.0381 (11)0.0653 (14)−0.0105 (9)−0.0103 (10)−0.0080 (10)
C110.0439 (11)0.0452 (12)0.0758 (16)−0.0115 (9)−0.0040 (10)−0.0185 (11)
C120.0740 (17)0.0731 (18)0.0786 (19)−0.0300 (14)−0.0008 (14)−0.0262 (15)
C130.098 (2)0.109 (3)0.083 (2)−0.042 (2)0.0038 (17)−0.044 (2)
C140.085 (2)0.095 (2)0.118 (3)−0.0436 (19)0.0095 (19)−0.062 (2)
C150.0646 (16)0.0599 (16)0.122 (3)−0.0255 (13)0.0028 (16)−0.0369 (17)
C160.0412 (11)0.0383 (12)0.102 (2)−0.0056 (9)−0.0084 (12)−0.0193 (12)
C170.082 (2)0.0633 (18)0.148 (3)−0.0364 (16)−0.026 (2)0.026 (2)
O30.1011 (15)0.0707 (13)0.0658 (12)−0.0183 (11)0.0032 (10)−0.0064 (10)
C180.152 (4)0.103 (3)0.084 (2)−0.050 (3)0.014 (2)0.000 (2)
N1—C11.351 (3)C7—H70.9300
N1—N21.370 (3)C9—H9A0.9600
N1—H10.8600C9—H9B0.9600
N2—C21.268 (3)C9—H9C0.9600
N3—C11.335 (3)C10—C111.458 (3)
N3—N41.381 (2)C10—H100.9300
N3—H3A0.8600C11—C121.363 (4)
N4—C101.269 (3)C11—C161.404 (3)
O1—C81.350 (4)C12—C131.386 (4)
O1—C91.419 (4)C12—H120.9300
O2—C161.350 (4)C13—C141.377 (5)
O2—C171.435 (3)C13—H130.9300
S1—C11.672 (2)C14—C151.356 (5)
C2—C31.459 (4)C14—H140.9300
C2—H20.9300C15—C161.385 (4)
C3—C41.382 (4)C15—H150.9300
C3—C81.395 (4)C17—H17A0.9600
C4—C51.379 (5)C17—H17B0.9600
C4—H40.9300C17—H17C0.9600
C5—C61.378 (6)O3—C181.391 (4)
C5—H50.9300O3—H30.8200
C6—C71.358 (6)C18—H18A0.9600
C6—H60.9300C18—H18B0.9600
C7—C81.383 (4)C18—H18C0.9600
C1—N1—N2119.98 (18)O1—C9—H9C109.5
C1—N1—H1120.0H9A—C9—H9C109.5
N2—N1—H1120.0H9B—C9—H9C109.5
C2—N2—N1116.55 (19)N4—C10—C11122.0 (2)
C1—N3—N4120.89 (19)N4—C10—H10119.0
C1—N3—H3A119.6C11—C10—H10119.0
N4—N3—H3A119.6C12—C11—C16119.1 (2)
C10—N4—N3113.93 (19)C12—C11—C10122.2 (2)
C8—O1—C9117.2 (3)C16—C11—C10118.7 (2)
C16—O2—C17118.8 (3)C11—C12—C13121.2 (3)
N3—C1—N1114.5 (2)C11—C12—H12119.4
N3—C1—S1125.35 (17)C13—C12—H12119.4
N1—C1—S1120.10 (16)C14—C13—C12118.8 (4)
N2—C2—C3120.8 (2)C14—C13—H13120.6
N2—C2—H2119.6C12—C13—H13120.6
C3—C2—H2119.6C15—C14—C13121.4 (3)
C4—C3—C8118.6 (3)C15—C14—H14119.3
C4—C3—C2120.9 (3)C13—C14—H14119.3
C8—C3—C2120.5 (2)C14—C15—C16119.9 (3)
C5—C4—C3120.5 (3)C14—C15—H15120.0
C5—C4—H4119.7C16—C15—H15120.0
C3—C4—H4119.7O2—C16—C15123.9 (3)
C6—C5—C4119.7 (4)O2—C16—C11116.5 (2)
C6—C5—H5120.1C15—C16—C11119.5 (3)
C4—C5—H5120.1O2—C17—H17A109.5
C7—C6—C5120.8 (4)O2—C17—H17B109.5
C7—C6—H6119.6H17A—C17—H17B109.5
C5—C6—H6119.6O2—C17—H17C109.5
C6—C7—C8119.8 (3)H17A—C17—H17C109.5
C6—C7—H7120.1H17B—C17—H17C109.5
C8—C7—H7120.1C18—O3—H3109.5
O1—C8—C7124.6 (3)O3—C18—H18A109.5
O1—C8—C3115.0 (2)O3—C18—H18B109.5
C7—C8—C3120.4 (3)H18A—C18—H18B109.5
O1—C9—H9A109.5O3—C18—H18C109.5
O1—C9—H9B109.5H18A—C18—H18C109.5
H9A—C9—H9B109.5H18B—C18—H18C109.5
D—H···AD—HH···AD···AD—H···A
O3—H3···S1i0.822.803.534 (2)150
O3—H3···N4i0.822.363.028 (3)139
N3—H3A···O30.862.383.126 (3)145
N1—H1···S1ii0.862.573.4184 (19)169
N3—H3A···N20.862.212.591 (3)106
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3⋯S1i 0.822.803.534 (2)150
O3—H3⋯N4i 0.822.363.028 (3)139
N3—H3A⋯O30.862.383.126 (3)145
N1—H1⋯S1ii 0.862.573.4184 (19)169

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antimicrobial and mutagenic properties of organotin(IV) complexes with isatin and N-alkylisatin bisthiocarbonohydrazones.

Authors:  A Bacchi; M Carcelli; P Pelagatti; G Pelizzi; M C Rodriguez-Arguelles; D Rogolino; C Solinas; F Zani
Journal:  J Inorg Biochem       Date:  2005-02       Impact factor: 4.155

3.  1,5-Bis(1-phenyl-ethyl-idene)thio-carbono-hydrazide.

Authors:  Lei Feng; Haiwei Ji; Renliang Wang; Haiyan Ge; Li Li
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-25

4.  1,5-Bis(4-meth-oxy-benzyl-idene)thio-carbonohydrazide methanol monosolvate.

Authors:  Xinyu Zhao
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-07-23
  4 in total
  1 in total

1.  1,5-Bis(4-iso-propyl-benzyl-idene)thio-carbonohydrazide.

Authors:  Yan-Hua Han; Qiao Zhao; Yong Wang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-10-19
  1 in total

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