Literature DB >> 24046683

Ethyl 4-(2-eth-oxy-2-oxoeth-yl)-3-oxo-4,13-di-aza-penta-cyclo-[11.8.0.0(2,11).0(5,10).0(14,19)]henicosa-1,5(10),6,8,11,14(19),15,17,20-nona-ene-12-carboxyl-ate.

Qing-Hua Meng1, Ya-Nan Wu, Ke Jiang, Yun Liu.   

Abstract

In the title compound, C26H22N2O5, the system consisting of five fused rings, being essentially planar with an r.m.s. deviation from the least-squares plane of 0.049 (3) Å, makes a dihedral angle of 58.72 (12)° with the plane of the ethyl carboxyl-ate group immediately attached to it, and a dihedral angle of 89.48 (14)° with the plane of the ethyl carboxyl-ate group attached via the -CH2- bridge. Bond lengths indicate π-delocalization over the whole penta-cyclic system. The mol-ecular conformation is stabilized by a weak intra-molecular C-H⋯O hydrogen bond. In the crystal, mol-ecules form stacks along the b-axis direction, neighboring mol-ecules within each stack being related by inversion and the shortest distance between the centroids of the pyridine rings within the stack being 3.667 (2) Å.

Entities:  

Year:  2013        PMID: 24046683      PMCID: PMC3770398          DOI: 10.1107/S1600536813015833

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For pharmaceutical properties of indolizines and related compounds, see: Olden et al. (1991 ▶); Jaffrezou et al. (1992 ▶). For the preparation of annulated indolizine, see: Liu et al. (2010 ▶). For standard bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C26H22N2O5 M = 442.46 Triclinic, a = 8.4000 (17) Å b = 11.008 (2) Å c = 12.304 (3) Å α = 74.33 (3)° β = 75.38 (3)° γ = 86.18 (3)° V = 1060.0 (4) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.3 × 0.2 × 0.2 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.977, T max = 0.981 4095 measured reflections 3811 independent reflections 2855 reflections with I > 2σ(I) R int = 0.021 3 standard reflections every 200 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.153 S = 1.01 3809 reflections 301 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813015833/yk2094sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813015833/yk2094Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813015833/yk2094Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H22N2O5Z = 2
Mr = 442.46F(000) = 464
Triclinic, P1Dx = 1.386 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4000 (17) ÅCell parameters from 25 reflections
b = 11.008 (2) Åθ = 9–12°
c = 12.304 (3) ŵ = 0.10 mm1
α = 74.33 (3)°T = 295 K
β = 75.38 (3)°Block, colourless
γ = 86.18 (3)°0.3 × 0.2 × 0.2 mm
V = 1060.0 (4) Å3
Enraf–Nonius CAD-4 diffractometer2855 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.021
Graphite monochromatorθmax = 25.2°, θmin = 1.8°
ω/2θ scansh = 0→10
Absorption correction: ψ scan (North et al., 1968)k = −13→13
Tmin = 0.977, Tmax = 0.981l = −14→14
4095 measured reflections3 standard reflections every 200 reflections
3811 independent reflections intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.153w = 1/[σ2(Fo2) + (0.067P)2 + 0.6558P] where P = (Fo2 + 2Fc2)/3
S = 1.01(Δ/σ)max < 0.001
3809 reflectionsΔρmax = 0.22 e Å3
301 parametersΔρmin = −0.25 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.056 (4)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.Two reflections were omitted from the initial data set of 3811 reflections, thus 3809 is the correct number of reflections in the L.S. refinement procedure
xyzUiso*/Ueq
O50.3913 (2)0.80663 (16)0.26370 (14)0.0453 (4)
N20.5328 (2)0.73427 (18)0.46629 (17)0.0413 (5)
O30.3219 (3)0.7099 (2)0.82722 (16)0.0659 (6)
C70.3563 (3)0.8813 (2)0.5236 (2)0.0394 (5)
N10.1884 (2)0.8865 (2)0.75042 (17)0.0475 (5)
C80.3822 (3)0.7900 (2)0.6224 (2)0.0428 (6)
O40.4712 (3)1.00189 (17)0.24670 (17)0.0650 (6)
C60.2412 (3)0.9830 (2)0.5397 (2)0.0411 (6)
C10.1577 (3)0.9812 (2)0.6552 (2)0.0437 (6)
C140.4914 (3)0.7000 (2)0.5869 (2)0.0437 (6)
C240.4415 (3)0.8959 (2)0.3036 (2)0.0426 (6)
C50.2067 (3)1.0811 (2)0.4496 (2)0.0474 (6)
H50.26241.08420.37330.057*
C230.4492 (3)0.8453 (2)0.4264 (2)0.0404 (5)
C210.7233 (3)0.7114 (3)0.2844 (2)0.0494 (6)
H210.69020.78840.24270.059*
C20.0422 (3)1.0757 (3)0.6742 (2)0.0521 (7)
H2−0.01421.07480.74990.062*
C220.6559 (3)0.6685 (2)0.4033 (2)0.0429 (6)
C90.2995 (3)0.7893 (3)0.7406 (2)0.0479 (6)
C170.7146 (3)0.5562 (2)0.4673 (2)0.0530 (7)
O2−0.1099 (3)0.7778 (2)0.8434 (2)0.0799 (7)
C40.0929 (3)1.1733 (3)0.4702 (3)0.0544 (7)
H40.07161.23730.40870.065*
C150.5548 (4)0.5884 (3)0.6489 (2)0.0541 (7)
H150.52430.56460.72980.065*
C30.0109 (3)1.1694 (3)0.5831 (3)0.0552 (7)
H3−0.06651.23110.59770.066*
O1−0.1713 (3)0.8786 (3)0.9833 (2)0.0916 (8)
C250.3949 (4)0.8401 (3)0.1403 (2)0.0573 (7)
H25A0.50610.86120.09380.069*
H25B0.32470.91230.12130.069*
C100.1035 (4)0.8897 (3)0.8679 (2)0.0616 (8)
H10A0.10920.97500.87480.074*
H10B0.16140.83520.92150.074*
C11−0.0746 (4)0.8496 (3)0.9045 (2)0.0618 (8)
C160.6595 (4)0.5167 (3)0.5907 (3)0.0590 (7)
H160.69620.44050.63140.071*
C200.8391 (4)0.6400 (3)0.2282 (3)0.0652 (8)
H200.88450.66940.14860.078*
C190.8888 (4)0.5240 (3)0.2896 (3)0.0799 (10)
H190.96190.47360.25060.096*
C13−0.2873 (6)0.6002 (5)0.9349 (5)0.136 (2)
H13A−0.25110.58931.00500.205*
H13B−0.21820.55180.88710.205*
H13C−0.39900.57170.95430.205*
C180.8299 (4)0.4852 (3)0.4063 (3)0.0709 (9)
H180.86700.40930.44720.085*
C260.3346 (5)0.7286 (4)0.1163 (3)0.0830 (11)
H26A0.22170.71280.15800.124*
H26B0.39980.65630.14100.124*
H26C0.34330.74460.03430.124*
C12−0.2776 (4)0.7282 (4)0.8740 (4)0.1070 (15)
H12A−0.35050.77630.92160.128*
H12B−0.31470.73880.80350.128*
U11U22U33U12U13U23
O50.0468 (10)0.0508 (10)0.0396 (9)0.0018 (8)−0.0118 (7)−0.0134 (8)
N20.0410 (11)0.0398 (11)0.0445 (11)0.0001 (9)−0.0108 (9)−0.0132 (9)
O30.0785 (14)0.0722 (13)0.0418 (11)0.0085 (11)−0.0132 (10)−0.0097 (10)
C70.0340 (12)0.0429 (13)0.0439 (13)−0.0032 (10)−0.0103 (10)−0.0142 (11)
N10.0395 (11)0.0613 (14)0.0418 (12)0.0005 (10)−0.0062 (9)−0.0173 (10)
C80.0387 (13)0.0470 (14)0.0429 (13)−0.0009 (11)−0.0099 (10)−0.0119 (11)
O40.0882 (15)0.0437 (11)0.0535 (11)−0.0043 (10)−0.0101 (10)−0.0026 (9)
C60.0326 (12)0.0465 (14)0.0464 (14)−0.0041 (10)−0.0080 (10)−0.0165 (11)
C10.0340 (12)0.0522 (15)0.0484 (14)−0.0060 (11)−0.0090 (11)−0.0184 (12)
C140.0448 (14)0.0439 (14)0.0421 (13)−0.0044 (11)−0.0119 (11)−0.0085 (11)
C240.0364 (13)0.0450 (14)0.0431 (13)0.0043 (11)−0.0044 (10)−0.0117 (11)
C50.0417 (14)0.0495 (15)0.0492 (15)0.0006 (11)−0.0089 (11)−0.0124 (12)
C230.0356 (12)0.0406 (13)0.0452 (13)−0.0011 (10)−0.0081 (10)−0.0127 (10)
C210.0400 (14)0.0538 (15)0.0537 (16)0.0064 (12)−0.0098 (12)−0.0159 (12)
C20.0418 (14)0.0595 (17)0.0559 (16)−0.0022 (12)−0.0016 (12)−0.0258 (14)
C220.0354 (12)0.0436 (13)0.0528 (15)0.0021 (10)−0.0119 (11)−0.0171 (11)
C90.0486 (15)0.0540 (15)0.0422 (14)−0.0035 (12)−0.0124 (12)−0.0121 (12)
C170.0508 (16)0.0495 (15)0.0601 (17)0.0073 (12)−0.0148 (13)−0.0172 (13)
O20.0557 (13)0.0863 (16)0.0884 (16)−0.0132 (11)0.0051 (11)−0.0250 (13)
C40.0478 (15)0.0480 (15)0.0651 (18)0.0049 (12)−0.0133 (13)−0.0126 (13)
C150.0614 (17)0.0506 (15)0.0490 (15)0.0015 (13)−0.0179 (13)−0.0072 (12)
C30.0437 (15)0.0514 (16)0.0715 (19)0.0057 (12)−0.0091 (13)−0.0237 (14)
O10.0767 (16)0.1089 (19)0.0682 (15)0.0147 (14)0.0162 (12)−0.0232 (14)
C250.0567 (17)0.0748 (19)0.0394 (14)0.0133 (14)−0.0130 (12)−0.0154 (13)
C100.0599 (18)0.083 (2)0.0438 (15)0.0119 (15)−0.0113 (13)−0.0247 (14)
C110.0578 (18)0.0673 (19)0.0451 (16)0.0095 (15)0.0018 (14)−0.0050 (14)
C160.0662 (18)0.0453 (15)0.0630 (18)0.0106 (13)−0.0211 (15)−0.0076 (13)
C200.0519 (17)0.080 (2)0.0603 (18)0.0102 (15)−0.0039 (14)−0.0240 (16)
C190.074 (2)0.080 (2)0.080 (2)0.0343 (18)−0.0092 (18)−0.0302 (19)
C130.114 (4)0.101 (4)0.178 (5)−0.043 (3)0.000 (4)−0.031 (3)
C180.073 (2)0.0600 (18)0.075 (2)0.0256 (16)−0.0161 (17)−0.0185 (16)
C260.093 (3)0.113 (3)0.0584 (19)−0.004 (2)−0.0301 (18)−0.037 (2)
C120.055 (2)0.100 (3)0.136 (4)−0.023 (2)0.001 (2)0.001 (3)
O5—C241.344 (3)O2—C111.320 (4)
O5—C251.456 (3)O2—C121.466 (4)
N2—C141.385 (3)C4—C31.376 (4)
N2—C231.401 (3)C4—H40.9300
N2—C221.412 (3)C15—C161.344 (4)
O3—C91.229 (3)C15—H150.9300
C7—C231.392 (3)C3—H30.9300
C7—C81.406 (3)O1—C111.199 (4)
C7—C61.452 (3)C25—C261.484 (4)
N1—C91.383 (3)C25—H25A0.9700
N1—C11.408 (3)C25—H25B0.9700
N1—C101.450 (3)C10—C111.509 (4)
C8—C141.387 (3)C10—H10A0.9700
C8—C91.443 (3)C10—H10B0.9700
O4—C241.192 (3)C16—H160.9300
C6—C51.397 (3)C20—C191.394 (5)
C6—C11.413 (3)C20—H200.9300
C1—C21.400 (4)C19—C181.352 (5)
C14—C151.409 (4)C19—H190.9300
C24—C231.479 (3)C13—C121.403 (6)
C5—C41.377 (4)C13—H13A0.9600
C5—H50.9300C13—H13B0.9600
C21—C201.376 (4)C13—H13C0.9600
C21—C221.388 (4)C18—H180.9300
C21—H210.9300C26—H26A0.9600
C2—C31.371 (4)C26—H26B0.9600
C2—H20.9300C26—H26C0.9600
C22—C171.407 (4)C12—H12A0.9700
C17—C181.400 (4)C12—H12B0.9700
C17—C161.423 (4)
C24—O5—C25116.4 (2)C16—C15—H15120.1
C14—N2—C23109.1 (2)C14—C15—H15120.1
C14—N2—C22120.8 (2)C2—C3—C4120.8 (3)
C23—N2—C22129.7 (2)C2—C3—H3119.6
C23—C7—C8107.1 (2)C4—C3—H3119.6
C23—C7—C6133.9 (2)O5—C25—C26107.0 (2)
C8—C7—C6118.8 (2)O5—C25—H25A110.3
C9—N1—C1124.3 (2)C26—C25—H25A110.3
C9—N1—C10116.1 (2)O5—C25—H25B110.3
C1—N1—C10119.6 (2)C26—C25—H25B110.3
C14—C8—C7109.1 (2)H25A—C25—H25B108.6
C14—C8—C9126.6 (2)N1—C10—C11115.0 (2)
C7—C8—C9124.2 (2)N1—C10—H10A108.5
C5—C6—C1118.2 (2)C11—C10—H10A108.5
C5—C6—C7124.8 (2)N1—C10—H10B108.5
C1—C6—C7117.1 (2)C11—C10—H10B108.5
C2—C1—N1119.9 (2)H10A—C10—H10B107.5
C2—C1—C6118.8 (2)O1—C11—O2124.4 (3)
N1—C1—C6121.2 (2)O1—C11—C10122.3 (3)
N2—C14—C8107.1 (2)O2—C11—C10113.2 (2)
N2—C14—C15120.4 (2)C15—C16—C17120.5 (3)
C8—C14—C15132.5 (2)C15—C16—H16119.7
O4—C24—O5123.4 (2)C17—C16—H16119.7
O4—C24—C23125.8 (2)C21—C20—C19120.5 (3)
O5—C24—C23110.8 (2)C21—C20—H20119.8
C4—C5—C6122.1 (2)C19—C20—H20119.8
C4—C5—H5119.0C18—C19—C20119.5 (3)
C6—C5—H5119.0C18—C19—H19120.2
C7—C23—N2107.6 (2)C20—C19—H19120.2
C7—C23—C24128.1 (2)C12—C13—H13A109.5
N2—C23—C24123.4 (2)C12—C13—H13B109.5
C20—C21—C22120.0 (3)H13A—C13—H13B109.5
C20—C21—H21120.0C12—C13—H13C109.5
C22—C21—H21120.0H13A—C13—H13C109.5
C3—C2—C1121.1 (2)H13B—C13—H13C109.5
C3—C2—H2119.5C19—C18—C17121.7 (3)
C1—C2—H2119.5C19—C18—H18119.1
C21—C22—C17119.7 (2)C17—C18—H18119.1
C21—C22—N2123.3 (2)C25—C26—H26A109.5
C17—C22—N2116.9 (2)C25—C26—H26B109.5
O3—C9—N1121.2 (2)H26A—C26—H26B109.5
O3—C9—C8124.5 (3)C25—C26—H26C109.5
N1—C9—C8114.3 (2)H26A—C26—H26C109.5
C18—C17—C22118.2 (3)H26B—C26—H26C109.5
C18—C17—C16120.9 (3)C13—C12—O2112.1 (4)
C22—C17—C16120.9 (2)C13—C12—H12A109.2
C11—O2—C12118.4 (3)O2—C12—H12A109.2
C5—C4—C3119.1 (3)C13—C12—H12B109.2
C5—C4—H4120.4O2—C12—H12B109.2
C3—C4—H4120.4H12A—C12—H12B107.9
C16—C15—C14119.7 (3)
D—H···AD—HH···AD···AD—H···A
C12—H12A···O10.972.322.712 (5)103
C10—H10B···O30.972.212.669 (4)107
C15—H15···O30.932.563.082 (4)116
C21—H21···O50.932.462.964 (3)114
C5—H5···O40.932.343.168 (3)148
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C5—H5⋯O40.932.343.168 (3)148
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of 1,2-annulated and 1,2-unsubstituted pyrrolo[2,1,5-de]quinolizin-5-ones (cycl[3.3.2]azin-5-ones) via [3+2] cycloadditions of 1-oxoquinolizinium ylides with cyclic alkenes.

Authors:  Yun Liu; Hua-You Hu; Yan Zhang; Hong-Wen Hu; Jian-Hua Xu
Journal:  Org Biomol Chem       Date:  2010-08-26       Impact factor: 3.876

Review 3.  The potential importance of swainsonine in therapy for cancers and immunology.

Authors:  K Olden; P Breton; K Grzegorzewski; Y Yasuda; B L Gause; O A Oredipe; S A Newton; S L White
Journal:  Pharmacol Ther       Date:  1991       Impact factor: 12.310

4.  In vitro and in vivo enhancement of ricin-A chain immunotoxin activity by novel indolizine calcium channel blockers: delayed intracellular degradation linked to lipidosis induction.

Authors:  J P Jaffrézou; T Levade; O Thurneyssen; M Chiron; C Bordier; M Attal; P Chatelain; G Laurent
Journal:  Cancer Res       Date:  1992-03-01       Impact factor: 12.701

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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