Literature DB >> 24046681

3-[(5-Chloro-2-hy-droxy-benzyl-idene)amino]-2-sulfanyl-idene-1,3-thia-zolidin-4-one.

Hakan Dal1.   

Abstract

In the title compound, C10H7ClN2O2S2, the mean plane of the thioxo-thia-zolidine ring [maximum deviation = 0.032 (2) Å] is inclined to the benzene ring by 12.25 (4)°. There is a strong intra-molecular O-H⋯N hydrogen bond present. In the crystal, mol-ecules are linked via pairs of C-H⋯Cl hydrogen bonds, forming inversion dimers.

Entities:  

Year:  2013        PMID: 24046681      PMCID: PMC3770396          DOI: 10.1107/S1600536813016577

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the chemistry, and pharmacological and biological activity of rhodanine and its derivatives, see: Raper (1985 ▶); Contello et al. (1994 ▶); Villain-Guillot et al. (2007 ▶); Yan et al. (2007 ▶); Kletzien et al. (1992 ▶).

Experimental

Crystal data

C10H7ClN2O2S2 M = 286.77 Monoclinic, a = 9.8506 (3) Å b = 10.0936 (3) Å c = 12.1096 (4) Å β = 110.409 (2)° V = 1128.45 (6) Å3 Z = 4 Mo Kα radiation μ = 0.70 mm−1 T = 100 K 0.37 × 0.26 × 0.11 mm

Data collection

Bruker Kappa APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.783, T max = 0.927 10564 measured reflections 2816 independent reflections 2427 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.081 S = 1.09 2816 reflections 162 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.45 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813016577/su2611sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016577/su2611Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813016577/su2611Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H7ClN2O2S2F(000) = 584
Mr = 286.77Dx = 1.688 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4301 reflections
a = 9.8506 (3) Åθ = 2.2–28.3°
b = 10.0936 (3) ŵ = 0.70 mm1
c = 12.1096 (4) ÅT = 100 K
β = 110.409 (2)°Block, yellow
V = 1128.45 (6) Å30.37 × 0.26 × 0.11 mm
Z = 4
Bruker Kappa APEXII CCD area-detector diffractometer2816 independent reflections
Radiation source: fine-focus sealed tube2427 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 28.4°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −13→13
Tmin = 0.783, Tmax = 0.927k = −13→13
10564 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.081H atoms treated by a mixture of independent and constrained refinement
S = 1.09w = 1/[σ2(Fo2) + (0.0379P)2 + 0.6866P] where P = (Fo2 + 2Fc2)/3
2816 reflections(Δ/σ)max = 0.001
162 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S1−0.07187 (4)1.08989 (5)0.26371 (4)0.01535 (11)
S2−0.06151 (4)1.23019 (5)0.48023 (4)0.01547 (11)
O10.31445 (14)0.95179 (13)0.40194 (11)0.0179 (3)
O20.25301 (14)1.25062 (13)0.75822 (11)0.0163 (3)
H20.221 (3)1.231 (2)0.695 (2)0.032 (7)*
N10.15074 (15)1.07839 (14)0.45427 (12)0.0117 (3)
N20.23170 (15)1.11112 (15)0.56955 (12)0.0129 (3)
C10.55038 (18)1.01067 (18)0.80910 (14)0.0139 (3)
H10.58080.94040.77100.017*
C20.63231 (17)1.04465 (18)0.92291 (14)0.0133 (3)
C30.59104 (18)1.14826 (18)0.98024 (14)0.0147 (3)
H30.64961.17231.05820.018*
C40.46398 (19)1.21576 (18)0.92266 (15)0.0155 (3)
H40.43501.28610.96170.019*
C50.37768 (18)1.18186 (18)0.80794 (14)0.0135 (3)
C60.42240 (17)1.07939 (17)0.74940 (14)0.0123 (3)
C70.34218 (18)1.04111 (18)0.62815 (15)0.0143 (3)
H70.378 (2)0.966 (2)0.5974 (19)0.019 (5)*
C80.01423 (18)1.13498 (17)0.40910 (14)0.0129 (3)
C90.07577 (19)0.98704 (19)0.25954 (15)0.0164 (4)
H9A0.04420.89350.24550.020*
H9B0.10921.01600.19520.020*
C100.19599 (19)1.00064 (17)0.37653 (15)0.0136 (3)
Cl10.79051 (4)0.95632 (4)0.99429 (3)0.01531 (11)
U11U22U33U12U13U23
S10.0133 (2)0.0190 (2)0.0114 (2)−0.00020 (16)0.00125 (16)−0.00067 (16)
S20.0143 (2)0.0150 (2)0.0173 (2)0.00122 (16)0.00585 (16)−0.00154 (16)
O10.0186 (6)0.0198 (7)0.0154 (6)0.0049 (5)0.0061 (5)−0.0001 (5)
O20.0158 (6)0.0176 (7)0.0128 (6)0.0054 (5)0.0016 (5)−0.0009 (5)
N10.0130 (7)0.0106 (7)0.0098 (6)−0.0006 (5)0.0020 (5)−0.0005 (5)
N20.0131 (6)0.0146 (8)0.0098 (6)−0.0020 (6)0.0025 (5)−0.0006 (5)
C10.0142 (8)0.0152 (9)0.0123 (8)0.0004 (7)0.0048 (6)−0.0003 (6)
C20.0111 (7)0.0147 (9)0.0126 (8)−0.0009 (6)0.0023 (6)0.0017 (6)
C30.0149 (8)0.0172 (9)0.0111 (7)−0.0027 (7)0.0033 (6)−0.0020 (7)
C40.0165 (8)0.0157 (9)0.0144 (8)0.0008 (7)0.0054 (7)−0.0019 (7)
C50.0126 (7)0.0142 (9)0.0137 (8)0.0002 (7)0.0047 (6)0.0022 (6)
C60.0135 (8)0.0112 (9)0.0119 (8)−0.0017 (6)0.0039 (6)−0.0006 (6)
C70.0152 (8)0.0138 (9)0.0134 (8)−0.0011 (7)0.0044 (6)−0.0004 (7)
C80.0126 (8)0.0129 (8)0.0122 (7)−0.0021 (6)0.0030 (6)0.0019 (6)
C90.0172 (8)0.0186 (10)0.0127 (8)0.0002 (7)0.0041 (7)−0.0023 (7)
C100.0177 (8)0.0110 (8)0.0126 (8)0.0000 (7)0.0062 (6)0.0022 (6)
Cl10.01286 (19)0.0175 (2)0.01301 (19)0.00297 (15)0.00127 (15)0.00100 (15)
S1—C81.7277 (17)C3—H30.9500
S1—C91.8018 (18)C4—C31.381 (2)
S2—C81.6341 (17)C4—C51.395 (2)
O1—C101.204 (2)C4—H40.9500
O2—C51.355 (2)C5—C61.409 (2)
O2—H20.74 (3)C7—N21.284 (2)
N1—N21.3848 (19)C7—C61.456 (2)
N1—C81.386 (2)C7—H70.97 (2)
N1—C101.412 (2)C9—C101.503 (2)
C1—C61.399 (2)C9—H9A0.9900
C1—H10.9500C9—H9B0.9900
C2—C11.376 (2)Cl1—C21.7410 (17)
C2—C31.392 (2)
C8—S1—C993.79 (8)C4—C5—C6119.50 (16)
C5—O2—H2109 (2)C1—C6—C5119.18 (15)
N2—N1—C8115.97 (13)C1—C6—C7117.63 (15)
N2—N1—C10126.87 (14)C5—C6—C7123.19 (16)
C8—N1—C10117.03 (14)N2—C7—C6117.94 (16)
C7—N2—N1120.33 (15)N2—C7—H7125.1 (13)
C2—C1—C6120.14 (16)C6—C7—H7116.9 (13)
C2—C1—H1119.9S2—C8—S1122.68 (10)
C6—C1—H1119.9N1—C8—S1110.95 (12)
C1—C2—C3121.03 (16)N1—C8—S2126.36 (13)
C1—C2—Cl1118.72 (13)S1—C9—H9A110.2
C3—C2—Cl1120.24 (13)S1—C9—H9B110.2
C2—C3—H3120.3C10—C9—S1107.42 (12)
C4—C3—C2119.31 (16)C10—C9—H9A110.2
C4—C3—H3120.3C10—C9—H9B110.2
C3—C4—C5120.79 (16)H9A—C9—H9B108.5
C3—C4—H4119.6O1—C10—N1124.09 (16)
C5—C4—H4119.6O1—C10—C9125.35 (16)
O2—C5—C4117.39 (15)N1—C10—C9110.55 (14)
O2—C5—C6123.12 (15)
C9—S1—C8—S2−177.82 (12)Cl1—C2—C1—C6179.78 (13)
C9—S1—C8—N11.29 (13)C1—C2—C3—C41.5 (3)
C8—S1—C9—C10−3.74 (13)Cl1—C2—C3—C4−179.02 (13)
C8—N1—N2—C7163.12 (15)C5—C4—C3—C2−0.5 (3)
C10—N1—N2—C7−21.1 (2)C3—C4—C5—O2178.56 (15)
N2—N1—C8—S1178.09 (11)C3—C4—C5—C6−1.4 (3)
N2—N1—C8—S2−2.8 (2)O2—C5—C6—C1−177.81 (15)
C10—N1—C8—S11.86 (18)O2—C5—C6—C72.7 (3)
C10—N1—C8—S2−179.07 (13)C4—C5—C6—C12.1 (2)
N2—N1—C10—O10.0 (3)C4—C5—C6—C7−177.44 (16)
N2—N1—C10—C9179.45 (15)C6—C7—N2—N1−179.40 (14)
C8—N1—C10—O1175.75 (16)N2—C7—C6—C1−174.04 (16)
C8—N1—C10—C9−4.8 (2)N2—C7—C6—C55.5 (3)
C2—C1—C6—C5−1.1 (2)S1—C9—C10—O1−175.28 (15)
C2—C1—C6—C7178.51 (15)S1—C9—C10—N15.26 (17)
C3—C2—C1—C6−0.8 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···N20.75 (2)1.97 (2)2.6291 (19)147 (3)
C9—H9B···Cl1i0.992.813.7860 (19)169
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯N20.75 (2)1.97 (2)2.6291 (19)147 (3)
C9—H9B⋯Cl1i 0.992.813.7860 (19)169

Symmetry code: (i) .

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