Literature DB >> 24046669

Methyl 3-[(6-nitro-4-oxo-3-phenyl-3,4-di-hydro-quinazolin-2-yl)sulfan-yl]propano-ate.

Ibrahim A Al-Suwaidan1, Alaa A-M Abdel-Aziz, Adel S El-Azab, C S Chidan Kumar, Hoong-Kun Fun.   

Abstract

In the title compound, C18H15N3O5S, the approximately planar quinazoline ring system [maximum deviation = 0.097 (3) Å] forms a dihedral angle of 76.53 (19)° with the phenyl ring. The terminal -C(=O)-O-C group is disordered over two sets of sites with a site-occupancy ratio of 0.811 (17):0.189 (17). In the crystal, mol-ecules are linked via weak C-H⋯O hydrogen bonds into sheets parallel to the ac plane.

Entities:  

Year:  2013        PMID: 24046669      PMCID: PMC3770384          DOI: 10.1107/S1600536813016127

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to quinazoline chemistry, see: El-Azab (2007 ▶); El-Azab et al. (2010 ▶, 2011 ▶); Alafeefy et al. (2008 ▶); Al-Suwaidan et al. (2013 ▶); El-Azab & ElTahir (2012a ▶,b ▶). For standard bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C18H15N3O5S M = 385.39 Monoclinic, a = 4.9146 (3) Å b = 26.5065 (18) Å c = 14.0900 (9) Å β = 94.645 (4)° V = 1829.5 (2) Å3 Z = 4 Cu Kα radiation μ = 1.89 mm−1 T = 296 K 0.32 × 0.26 × 0.13 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.583, T max = 0.791 12669 measured reflections 3382 independent reflections 1861 reflections with I > 2σ(I) R int = 0.059

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.191 S = 1.03 3382 reflections 273 parameters 9 restraints H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813016127/lh5622sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016127/lh5622Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813016127/lh5622Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H15N3O5SF(000) = 800
Mr = 385.39Dx = 1.399 Mg m3
Monoclinic, P21/nMelting point: 480 K
Hall symbol: -P 2ynCu Kα radiation, λ = 1.54178 Å
a = 4.9146 (3) ÅCell parameters from 1209 reflections
b = 26.5065 (18) Åθ = 3.3–67.5°
c = 14.0900 (9) ŵ = 1.89 mm1
β = 94.645 (4)°T = 296 K
V = 1829.5 (2) Å3Block, colourless
Z = 40.32 × 0.26 × 0.13 mm
Bruker SMART APEXII CCD area-detector diffractometer3382 independent reflections
Radiation source: fine-focus sealed tube1861 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.059
φ and ω scansθmax = 69.8°, θmin = 3.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −5→4
Tmin = 0.583, Tmax = 0.791k = −31→31
12669 measured reflectionsl = −17→17
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.064H-atom parameters constrained
wR(F2) = 0.191w = 1/[σ2(Fo2) + (0.0825P)2 + 0.1932P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3382 reflectionsΔρmax = 0.24 e Å3
273 parametersΔρmin = −0.16 e Å3
9 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0030 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.3830 (2)0.12146 (4)0.63782 (7)0.0880 (4)
O20.8688 (6)0.19581 (12)0.38141 (18)0.0982 (9)
O31.5168 (8)0.33688 (17)0.4490 (3)0.1442 (16)
O41.6007 (9)0.36422 (17)0.5910 (3)0.1520 (16)
N10.7309 (6)0.19860 (13)0.6615 (2)0.0790 (9)
N20.6827 (6)0.16072 (12)0.50857 (19)0.0741 (8)
N31.4799 (8)0.33704 (17)0.5326 (4)0.1094 (13)
C10.6245 (7)0.16499 (15)0.6034 (2)0.0738 (9)
C20.8395 (7)0.19721 (16)0.4673 (3)0.0786 (10)
C30.9676 (7)0.23374 (15)0.5321 (2)0.0760 (10)
C41.1534 (8)0.26847 (16)0.5010 (3)0.0849 (11)
H4A1.19120.26940.43740.102*
C51.2796 (8)0.30119 (17)0.5656 (3)0.0884 (11)
C61.2314 (9)0.30066 (18)0.6598 (3)0.0984 (13)
H6A1.32290.32290.70230.118*
C71.0479 (9)0.26718 (17)0.6906 (3)0.0927 (12)
H7A1.01170.26710.75440.111*
C80.9117 (7)0.23265 (15)0.6269 (3)0.0787 (10)
C90.5906 (7)0.11756 (17)0.4514 (2)0.0783 (10)
C100.3811 (8)0.1233 (2)0.3819 (3)0.0991 (14)
H10A0.29850.15450.37060.119*
C110.2955 (11)0.0814 (3)0.3288 (4)0.1243 (19)
H11A0.15160.08440.28200.149*
C120.4181 (12)0.0363 (3)0.3440 (4)0.1245 (19)
H12A0.35670.00840.30850.149*
C130.6334 (11)0.0314 (2)0.4119 (4)0.1198 (17)
H13A0.72080.00040.42120.144*
C140.7186 (9)0.07209 (18)0.4656 (3)0.1008 (14)
H14A0.86360.06890.51180.121*
C150.3526 (9)0.14022 (17)0.7595 (2)0.0889 (12)
H15A0.45550.17100.77240.107*
H15B0.16250.14730.76820.107*
C160.4560 (8)0.09993 (17)0.8302 (3)0.0871 (11)
H16A0.64270.09160.81880.105*
H16B0.45720.11360.89410.105*
C170.2895 (9)0.05291 (19)0.8246 (3)0.0925 (13)0.811 (17)
O10.085 (3)0.0464 (8)0.7732 (11)0.107 (4)0.811 (17)
O50.4116 (19)0.0176 (3)0.8814 (6)0.118 (3)0.811 (17)
C180.264 (3)−0.0316 (3)0.8826 (7)0.157 (4)0.811 (17)
H18A0.3690−0.05510.92230.235*0.811 (17)
H18B0.2381−0.04470.81900.235*0.811 (17)
H18C0.0892−0.02660.90720.235*0.811 (17)
C17A0.2895 (9)0.05291 (19)0.8246 (3)0.0925 (13)0.189 (17)
O1A0.120 (14)0.048 (4)0.759 (5)0.115 (18)0.189 (17)
O5A0.293 (6)0.0223 (10)0.9005 (15)0.089 (7)0.189 (17)
C18A0.134 (10)−0.0214 (14)0.934 (3)0.156 (7)0.189 (17)
H18D0.2131−0.03240.99520.234*0.189 (17)
H18E0.1376−0.04860.88930.234*0.189 (17)
H18F−0.0517−0.01120.93960.234*0.189 (17)
U11U22U33U12U13U23
S10.0921 (7)0.0934 (8)0.0790 (6)−0.0061 (5)0.0095 (4)−0.0080 (6)
O20.119 (2)0.109 (3)0.0674 (15)0.0031 (17)0.0072 (13)−0.0014 (16)
O30.148 (3)0.169 (4)0.119 (3)−0.039 (3)0.023 (2)0.034 (3)
O40.163 (4)0.138 (4)0.153 (3)−0.056 (3)−0.003 (3)0.003 (3)
N10.092 (2)0.077 (2)0.0678 (17)0.0000 (16)0.0039 (14)−0.0049 (17)
N20.0814 (19)0.078 (2)0.0622 (16)0.0074 (15)0.0006 (13)−0.0056 (16)
N30.103 (3)0.103 (3)0.120 (3)−0.006 (2)−0.004 (2)0.024 (3)
C10.080 (2)0.073 (3)0.068 (2)0.0073 (17)0.0035 (15)0.001 (2)
C20.086 (2)0.083 (3)0.066 (2)0.012 (2)−0.0007 (17)0.001 (2)
C30.088 (2)0.071 (3)0.068 (2)0.0111 (19)0.0005 (16)0.0045 (19)
C40.090 (3)0.085 (3)0.079 (2)0.010 (2)0.0033 (19)0.013 (2)
C50.092 (3)0.080 (3)0.092 (3)0.002 (2)−0.002 (2)0.012 (2)
C60.117 (3)0.089 (3)0.088 (3)−0.016 (3)−0.006 (2)0.001 (3)
C70.116 (3)0.091 (3)0.071 (2)−0.007 (2)0.003 (2)−0.004 (2)
C80.090 (2)0.072 (3)0.073 (2)0.0019 (19)0.0002 (17)0.001 (2)
C90.082 (2)0.086 (3)0.067 (2)0.004 (2)0.0031 (16)−0.007 (2)
C100.095 (3)0.115 (4)0.085 (3)0.009 (2)−0.010 (2)−0.016 (3)
C110.111 (4)0.161 (6)0.098 (3)−0.008 (4)−0.015 (3)−0.030 (4)
C120.129 (4)0.137 (6)0.108 (4)−0.031 (4)0.012 (3)−0.049 (4)
C130.136 (4)0.095 (4)0.130 (4)0.000 (3)0.016 (3)−0.038 (3)
C140.104 (3)0.095 (4)0.100 (3)0.006 (3)−0.008 (2)−0.026 (3)
C150.100 (3)0.093 (3)0.076 (2)0.003 (2)0.0171 (19)−0.008 (2)
C160.082 (2)0.094 (3)0.085 (2)−0.001 (2)0.0058 (19)−0.007 (2)
C170.092 (3)0.102 (4)0.083 (3)−0.011 (2)0.005 (2)−0.009 (3)
O10.089 (5)0.119 (7)0.110 (6)−0.015 (5)−0.006 (6)−0.006 (5)
O50.132 (6)0.111 (4)0.109 (4)−0.017 (4)−0.014 (4)0.020 (3)
C180.229 (11)0.110 (6)0.130 (7)−0.069 (7)0.011 (6)0.006 (5)
C17A0.092 (3)0.102 (4)0.083 (3)−0.011 (2)0.005 (2)−0.009 (3)
O1A0.10 (3)0.14 (3)0.10 (2)−0.05 (2)0.028 (16)−0.02 (2)
O5A0.083 (15)0.101 (15)0.082 (12)−0.005 (11)−0.005 (9)0.027 (10)
C18A0.226 (15)0.103 (11)0.137 (12)−0.061 (11)0.004 (11)−0.006 (11)
S1—C11.752 (4)C10—H10A0.9300
S1—C151.803 (4)C11—C121.348 (7)
O2—C21.231 (4)C11—H11A0.9300
O3—N31.207 (5)C12—C131.374 (7)
O4—N31.212 (5)C12—H12A0.9300
N1—C11.291 (4)C13—C141.364 (6)
N1—C81.382 (5)C13—H13A0.9300
N2—C21.393 (5)C14—H14A0.9300
N2—C11.394 (4)C15—C161.519 (5)
N2—C91.451 (5)C15—H15A0.9700
N3—C51.470 (6)C15—H15B0.9700
C2—C31.440 (5)C16—C171.489 (6)
C3—C81.386 (5)C16—H16A0.9700
C3—C41.393 (5)C16—H16B0.9700
C4—C51.369 (5)C17—O11.204 (7)
C4—H4A0.9300C17—O51.342 (6)
C5—C61.367 (6)O5—C181.494 (8)
C6—C71.361 (6)C18—H18A0.9600
C6—H6A0.9300C18—H18B0.9600
C7—C81.412 (5)C18—H18C0.9600
C7—H7A0.9300O5A—C18A1.496 (9)
C9—C141.367 (6)C18A—H18D0.9600
C9—C101.371 (5)C18A—H18E0.9600
C10—C111.385 (7)C18A—H18F0.9600
C1—S1—C15101.0 (2)C12—C11—H11A119.6
C1—N1—C8117.8 (3)C10—C11—H11A119.6
C2—N2—C1120.5 (3)C11—C12—C13120.3 (5)
C2—N2—C9118.3 (3)C11—C12—H12A119.9
C1—N2—C9121.2 (3)C13—C12—H12A119.9
O3—N3—O4124.1 (5)C14—C13—C12119.7 (5)
O3—N3—C5117.6 (5)C14—C13—H13A120.1
O4—N3—C5118.3 (5)C12—C13—H13A120.1
N1—C1—N2124.0 (4)C13—C14—C9120.0 (4)
N1—C1—S1121.9 (3)C13—C14—H14A120.0
N2—C1—S1114.1 (3)C9—C14—H14A120.0
O2—C2—N2120.1 (4)C16—C15—S1112.3 (3)
O2—C2—C3124.3 (4)C16—C15—H15A109.1
N2—C2—C3115.5 (3)S1—C15—H15A109.1
C8—C3—C4120.3 (4)C16—C15—H15B109.1
C8—C3—C2119.1 (4)S1—C15—H15B109.1
C4—C3—C2120.6 (3)H15A—C15—H15B107.9
C5—C4—C3118.9 (4)C17—C16—C15113.6 (4)
C5—C4—H4A120.6C17—C16—H16A108.8
C3—C4—H4A120.6C15—C16—H16A108.8
C6—C5—C4122.3 (4)C17—C16—H16B108.8
C6—C5—N3119.1 (4)C15—C16—H16B108.8
C4—C5—N3118.6 (4)H16A—C16—H16B107.7
C7—C6—C5119.2 (4)O1—C17—O5124.8 (11)
C7—C6—H6A120.4O1—C17—C16125.5 (11)
C5—C6—H6A120.4O5—C17—C16109.6 (5)
C6—C7—C8120.8 (4)C17—O5—C18114.9 (7)
C6—C7—H7A119.6O5—C18—H18A109.5
C8—C7—H7A119.6O5—C18—H18B109.5
N1—C8—C3122.4 (3)H18A—C18—H18B109.5
N1—C8—C7119.0 (3)O5—C18—H18C109.5
C3—C8—C7118.6 (4)H18A—C18—H18C109.5
C14—C9—C10120.8 (4)H18B—C18—H18C109.5
C14—C9—N2119.7 (3)O5A—C18A—H18D109.5
C10—C9—N2119.5 (4)O5A—C18A—H18E109.5
C9—C10—C11118.4 (5)H18D—C18A—H18E109.5
C9—C10—H10A120.8O5A—C18A—H18F109.5
C11—C10—H10A120.8H18D—C18A—H18F109.5
C12—C11—C10120.8 (5)H18E—C18A—H18F109.5
C8—N1—C1—N20.6 (5)C1—N1—C8—C34.1 (6)
C8—N1—C1—S1−177.5 (3)C1—N1—C8—C7−174.9 (3)
C2—N2—C1—N1−7.6 (5)C4—C3—C8—N1−179.4 (3)
C9—N2—C1—N1170.2 (3)C2—C3—C8—N1−1.9 (6)
C2—N2—C1—S1170.6 (3)C4—C3—C8—C7−0.3 (6)
C9—N2—C1—S1−11.6 (4)C2—C3—C8—C7177.2 (3)
C15—S1—C1—N10.6 (4)C6—C7—C8—N1178.7 (4)
C15—S1—C1—N2−177.6 (3)C6—C7—C8—C3−0.4 (6)
C1—N2—C2—O2−173.2 (3)C2—N2—C9—C14103.2 (4)
C9—N2—C2—O29.0 (5)C1—N2—C9—C14−74.6 (5)
C1—N2—C2—C39.3 (5)C2—N2—C9—C10−74.9 (5)
C9—N2—C2—C3−168.6 (3)C1—N2—C9—C10107.2 (4)
O2—C2—C3—C8177.8 (4)C14—C9—C10—C112.4 (7)
N2—C2—C3—C8−4.8 (5)N2—C9—C10—C11−179.5 (4)
O2—C2—C3—C4−4.7 (6)C9—C10—C11—C12−1.0 (8)
N2—C2—C3—C4172.7 (3)C10—C11—C12—C13−1.0 (9)
C8—C3—C4—C50.2 (6)C11—C12—C13—C141.7 (8)
C2—C3—C4—C5−177.3 (3)C12—C13—C14—C9−0.3 (8)
C3—C4—C5—C60.6 (6)C10—C9—C14—C13−1.7 (7)
C3—C4—C5—N3178.7 (3)N2—C9—C14—C13−179.8 (4)
O3—N3—C5—C6−179.5 (5)C1—S1—C15—C16−114.3 (3)
O4—N3—C5—C61.7 (7)S1—C15—C16—C17−65.9 (4)
O3—N3—C5—C42.3 (6)C15—C16—C17—O1−3.1 (14)
O4—N3—C5—C4−176.5 (4)C15—C16—C17—O5173.2 (6)
C4—C5—C6—C7−1.3 (7)O1—C17—O5—C18−3.9 (15)
N3—C5—C6—C7−179.4 (4)C16—C17—O5—C18179.8 (6)
C5—C6—C7—C81.2 (7)
D—H···AD—HH···AD···AD—H···A
C6—H6A···O2i0.932.563.142 (5)121
C10—H10A···O2ii0.932.393.167 (5)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6A⋯O2i 0.932.563.142 (5)121
C10—H10A⋯O2ii 0.932.393.167 (5)140

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Synthesis and anticonvulsant evaluation of some new 2,3,8-trisubstituted-4(3H)-quinazoline derivatives.

Authors:  Adel S El-Azab; Kamal E H Eltahir
Journal:  Bioorg Med Chem Lett       Date:  2011-11-16       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Design, synthesis and biological evaluation of novel quinazoline derivatives as potential antitumor agents: molecular docking study.

Authors:  Adel S El-Azab; Mohamed A Al-Omar; Alaa A-M Abdel-Aziz; Naglaa I Abdel-Aziz; Magda A-A el-Sayed; Abdulaziz M Aleisa; Mohamed M Sayed-Ahmed; Sami G Abdel-Hamide
Journal:  Eur J Med Chem       Date:  2010-06-16       Impact factor: 6.514

4.  Design and synthesis of novel 7-aminoquinazoline derivatives: antitumor and anticonvulsant activities.

Authors:  Adel S El-Azab; Kamal E H Eltahir
Journal:  Bioorg Med Chem Lett       Date:  2012-01-28       Impact factor: 2.823

5.  Design, synthesis and biological evaluation of 2-mercapto-3-phenethylquinazoline bearing anilide fragments as potential antitumor agents: molecular docking study.

Authors:  Ibrahim A Al-Suwaidan; Amer M Alanazi; Alaa A-M Abdel-Aziz; Menshawy A Mohamed; Adel S El-Azab
Journal:  Bioorg Med Chem Lett       Date:  2013-04-29       Impact factor: 2.823

6.  Synthesis, analgesic and anti-inflammatory evaluation of some new 3H-quinazolin-4-one derivatives.

Authors:  Ahmed M Alafeefy; Adnan A Kadi; Adel S El-Azab; Sami G Abdel-Hamide; Mohamad-Hesham Y Daba
Journal:  Arch Pharm (Weinheim)       Date:  2008-06       Impact factor: 3.751

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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