Literature DB >> 24046657

2-(1-Methyl-2-oxoindolin-3-yl-idene)malono-nitrile.

De-Cai Wang1, Wei Tang, Peng Su, Ping-Kai Ou-Yang.   

Abstract

The title mol-ecule, C12H7N3O, is almost planar, with an r.m.s. deviation of 0.026 Å. No directional interactions could be detected in the crystal.

Entities:  

Year:  2013        PMID: 24046657      PMCID: PMC3770372          DOI: 10.1107/S1600536813016012

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature, see: Demchuk et al. (2011 ▶). For the crystal structure of a related compound, see: Spencer et al. (2010) ▶.

Experimental

Crystal data

C12H7N3O M = 209.21 Monoclinic, a = 6.9720 (14) Å b = 9.929 (2) Å c = 15.084 (3) Å β = 100.25 (3)° V = 1027.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.973, T max = 0.991 2056 measured reflections 1896 independent reflections 1278 reflections with I > 2σ(I) R int = 0.081 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.176 S = 1.00 1896 reflections 146 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo,1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813016012/pv2634sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813016012/pv2634Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813016012/pv2634Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H7N3OF(000) = 432
Mr = 209.21Dx = 1.352 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 25 reflections
a = 6.9720 (14) Åθ = 9–13°
b = 9.929 (2) ŵ = 0.09 mm1
c = 15.084 (3) ÅT = 293 K
β = 100.25 (3)°Block, yellow
V = 1027.5 (4) Å30.30 × 0.20 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1278 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.081
Graphite monochromatorθmax = 25.4°, θmin = 2.5°
ω/2θ scansh = 0→8
Absorption correction: ψ scan (North et al., 1968)k = 0→11
Tmin = 0.973, Tmax = 0.991l = −18→17
2056 measured reflections3 standard reflections every 200 reflections
1896 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.176w = 1/[σ2(Fo2) + (0.1P)2 + 0.150P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1896 reflectionsΔρmax = 0.18 e Å3
146 parametersΔρmin = −0.19 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.082 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O0.0898 (3)0.2173 (2)0.80717 (13)0.0706 (7)
C10.0975 (4)−0.0799 (3)0.83219 (16)0.0473 (7)
N10.1159 (4)−0.3343 (3)0.86555 (18)0.0819 (9)
C20.1095 (4)−0.2216 (3)0.85071 (18)0.0553 (7)
N2−0.0627 (5)−0.0331 (3)0.66758 (18)0.0853 (9)
C30.0117 (4)−0.0467 (3)0.74109 (18)0.0583 (8)
N30.2174 (3)0.2233 (2)0.95933 (14)0.0526 (6)
C40.1582 (3)0.0124 (2)0.89713 (16)0.0439 (6)
C50.1483 (4)0.1621 (3)0.87912 (17)0.0505 (7)
C60.2761 (3)0.1273 (2)1.02696 (16)0.0452 (6)
C70.3584 (4)0.1494 (3)1.11602 (17)0.0535 (7)
H7A0.38320.23611.13850.064*
C80.4027 (4)0.0373 (3)1.17050 (18)0.0560 (7)
H8A0.45730.04931.23090.067*
C90.3678 (4)−0.0923 (3)1.13745 (17)0.0572 (7)
H9A0.3983−0.16541.17590.069*
C100.2876 (4)−0.1141 (3)1.04742 (16)0.0492 (7)
H10A0.2649−0.20101.02500.059*
C110.2423 (3)−0.0029 (2)0.99178 (15)0.0427 (6)
C120.2311 (5)0.3684 (3)0.9719 (2)0.0769 (10)
H12A0.18160.41260.91590.115*
H12B0.36490.39330.99170.115*
H12C0.15580.39511.01640.115*
U11U22U33U12U13U23
O0.1073 (17)0.0532 (12)0.0506 (12)0.0063 (10)0.0123 (11)0.0123 (9)
C10.0525 (15)0.0477 (16)0.0421 (14)0.0037 (11)0.0098 (11)0.0010 (11)
N10.119 (2)0.0507 (17)0.0754 (19)0.0038 (15)0.0144 (16)−0.0016 (14)
C20.0689 (18)0.0507 (17)0.0453 (15)0.0021 (13)0.0077 (12)−0.0035 (13)
N20.116 (2)0.089 (2)0.0472 (15)0.0060 (17)0.0046 (14)0.0044 (14)
C30.077 (2)0.0517 (16)0.0466 (17)0.0008 (14)0.0122 (14)−0.0018 (13)
N30.0735 (15)0.0372 (12)0.0488 (13)0.0004 (10)0.0155 (11)0.0023 (10)
C40.0474 (13)0.0426 (14)0.0429 (13)0.0025 (10)0.0112 (10)0.0025 (11)
C50.0622 (16)0.0464 (15)0.0452 (15)0.0013 (12)0.0155 (12)0.0052 (12)
C60.0472 (14)0.0453 (15)0.0451 (14)0.0006 (11)0.0135 (10)0.0006 (11)
C70.0581 (16)0.0550 (16)0.0482 (15)−0.0048 (12)0.0118 (12)−0.0078 (13)
C80.0581 (16)0.0666 (19)0.0415 (14)0.0021 (13)0.0042 (11)−0.0007 (13)
C90.0619 (17)0.0606 (18)0.0477 (16)0.0066 (13)0.0060 (12)0.0107 (13)
C100.0545 (15)0.0454 (15)0.0475 (14)0.0045 (11)0.0089 (11)0.0044 (11)
C110.0436 (13)0.0444 (14)0.0408 (13)0.0025 (10)0.0095 (10)0.0011 (11)
C120.122 (3)0.0415 (17)0.072 (2)−0.0048 (16)0.0294 (18)−0.0016 (14)
O—C51.220 (3)C6—C111.402 (3)
C1—C41.353 (4)C7—C81.386 (4)
C1—C21.434 (4)C7—H7A0.9300
C1—C31.436 (4)C8—C91.386 (4)
N1—C21.140 (4)C8—H8A0.9300
N2—C31.146 (3)C9—C101.390 (4)
N3—C51.363 (3)C9—H9A0.9300
N3—C61.403 (3)C10—C111.388 (3)
N3—C121.455 (4)C10—H10A0.9300
C4—C111.452 (3)C12—H12A0.9600
C4—C51.510 (4)C12—H12B0.9600
C6—C71.381 (3)C12—H12C0.9600
C4—C1—C2121.6 (2)C8—C7—H7A121.3
C4—C1—C3124.1 (2)C9—C8—C7121.8 (3)
C2—C1—C3114.3 (2)C9—C8—H8A119.1
N1—C2—C1178.9 (3)C7—C8—H8A119.1
N2—C3—C1173.3 (3)C8—C9—C10120.7 (3)
C5—N3—C6110.7 (2)C8—C9—H9A119.7
C5—N3—C12124.2 (2)C10—C9—H9A119.7
C6—N3—C12125.1 (2)C11—C10—C9118.4 (3)
C1—C4—C11131.3 (2)C11—C10—H10A120.8
C1—C4—C5122.5 (2)C9—C10—H10A120.8
C11—C4—C5106.1 (2)C10—C11—C6120.0 (2)
O—C5—N3126.8 (3)C10—C11—C4133.4 (2)
O—C5—C4126.9 (2)C6—C11—C4106.7 (2)
N3—C5—C4106.3 (2)N3—C12—H12A109.5
C7—C6—C11121.9 (2)N3—C12—H12B109.5
C7—C6—N3128.0 (2)H12A—C12—H12B109.5
C11—C6—N3110.1 (2)N3—C12—H12C109.5
C6—C7—C8117.3 (3)H12A—C12—H12C109.5
C6—C7—H7A121.3H12B—C12—H12C109.5
C2—C1—C4—C110.1 (4)C11—C6—C7—C8−1.5 (4)
C3—C1—C4—C11178.2 (2)N3—C6—C7—C8179.4 (2)
C2—C1—C4—C5179.6 (2)C6—C7—C8—C90.5 (4)
C3—C1—C4—C5−2.3 (4)C7—C8—C9—C100.4 (4)
C6—N3—C5—O−178.5 (3)C8—C9—C10—C11−0.4 (4)
C12—N3—C5—O0.5 (4)C9—C10—C11—C6−0.5 (4)
C6—N3—C5—C41.6 (3)C9—C10—C11—C4−179.6 (2)
C12—N3—C5—C4−179.4 (2)C7—C6—C11—C101.6 (4)
C1—C4—C5—O−1.0 (4)N3—C6—C11—C10−179.3 (2)
C11—C4—C5—O178.6 (2)C7—C6—C11—C4−179.1 (2)
C1—C4—C5—N3178.9 (2)N3—C6—C11—C40.0 (3)
C11—C4—C5—N3−1.5 (3)C1—C4—C11—C10−0.4 (5)
C5—N3—C6—C7178.0 (2)C5—C4—C11—C10−179.9 (3)
C12—N3—C6—C7−0.9 (4)C1—C4—C11—C6−179.6 (2)
C5—N3—C6—C11−1.1 (3)C5—C4—C11—C60.9 (3)
C12—N3—C6—C11179.9 (2)
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