Literature DB >> 24046650

8β-Eth-oxy-eremophil-3,7(11)-diene-8α,12;6α,15-diolide.

Dong-Qing Fei1, Le-Le Dong, Hui-Hong Li, Zhan-Xin Zhang.   

Abstract

The title compound, C17H20O5, an eremophilane sesquiternoid, was isolated from the roots of Ligularia lapathifolia. The mol-ecule contains four fused rings of which the six-membered ring A adopts a half-chair conformation, the six-membered ring B adopts a chair conformation, the five-membered ring C is almost planar (r.m.s. deviation = 0.015 Å) and the five-membered ring D adopts an envelope conformation with the quaternary C atom as the flap. The methyl and the eth-oxy groups adopt a syn conformation and the A/B ring junction is cis-fused. No directional inter-molecular inter-actions could be identified in the crystal.

Entities:  

Year:  2013        PMID: 24046650      PMCID: PMC3770365          DOI: 10.1107/S1600536813015729

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further information on the isolation of the title compound, see Fei et al. (2007 ▶). For pucking paramaters, see: Cremer & Pople (1975 ▶); Boeyens (1978 ▶)

Experimental

Crystal data

C17H20O5 M = 304.33 Orthorhombic, a = 8.4925 (2) Å b = 13.0302 (4) Å c = 14.1381 (9) Å V = 1564.50 (12) Å3 Z = 4 Cu Kα radiation μ = 0.78 mm−1 T = 294 K 0.33 × 0.28 × 0.12 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Eos) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013 ▶) T min = 0.743, T max = 1.000 14336 measured reflections 2994 independent reflections 2871 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.103 S = 1.03 2994 reflections 202 parameters H-atom parameters constrained Δρmax = 0.13 e Å−3 Δρmin = −0.18 e Å−3 Absolute structure: Flack (1983 ▶) Flack parameter: −0.1 (2) Data collection: CrysAlis PRO (Agilent, 2013 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SUPERFLIP (Palatinus & Chapuis, 2007 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: OLEX2. Crystal structure: contains datablock(s) global. DOI: 10.1107/S1600536813015729/hb7083sup1.cif Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20O5Dx = 1.292 Mg m3
Mr = 304.33Cu Kα radiation, λ = 1.5418 Å
Orthorhombic, P212121Cell parameters from 9242 reflections
a = 8.4925 (2) Åθ = 4.6–70.7°
b = 13.0302 (4) ŵ = 0.78 mm1
c = 14.1381 (9) ÅT = 294 K
V = 1564.50 (12) Å3Block, colourless
Z = 40.33 × 0.28 × 0.12 mm
F(000) = 648
Agilent SuperNova (Dual, Cu at zero, Eos) diffractometer2994 independent reflections
Radiation source: SuperNova (Cu) X-ray Source2871 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.027
Detector resolution: 16.0733 pixels mm-1θmax = 70.8°, θmin = 4.6°
ω scansh = −10→9
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2013)k = −15→15
Tmin = 0.743, Tmax = 1.000l = −16→17
14336 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H-atom parameters constrained
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0636P)2 + 0.1574P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.003
2994 reflectionsΔρmax = 0.13 e Å3
202 parametersΔρmin = −0.18 e Å3
0 restraintsAbsolute structure: Flack (1983), 000 Friedel pairs
Primary atom site location: iterativeFlack parameter: −0.1 (2)
Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.36.28 (release 01-02-2013 CrysAlis171 .NET) (compiled Feb 1 2013,16:14:44) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.9183 (2)0.64050 (12)0.11330 (10)0.0794 (4)
O20.79269 (15)0.60175 (8)0.24732 (9)0.0556 (3)
O30.82873 (14)0.24550 (10)0.20230 (9)0.0580 (3)
O40.6780 (2)0.17448 (13)0.09057 (11)0.0839 (5)
O50.81102 (14)0.52062 (10)0.39285 (7)0.0514 (3)
C10.3694 (2)0.36787 (16)0.35509 (16)0.0642 (5)
H1A0.34870.30850.39450.077*
H1B0.31330.42570.38220.077*
C20.3051 (2)0.34733 (16)0.25617 (17)0.0678 (5)
H2A0.20710.30960.26170.081*
H2B0.28180.41240.22600.081*
C30.4146 (2)0.28847 (14)0.19487 (14)0.0582 (4)
H30.37950.26500.13650.070*
C40.5619 (2)0.26851 (12)0.22151 (12)0.0484 (4)
C50.63488 (19)0.29910 (12)0.31377 (12)0.0467 (4)
C60.80727 (18)0.31837 (12)0.27873 (11)0.0457 (4)
H60.88170.30340.32990.055*
C70.83272 (17)0.42502 (11)0.24365 (11)0.0416 (3)
C80.75684 (19)0.50977 (12)0.30066 (11)0.0436 (3)
C90.58186 (19)0.49238 (12)0.30652 (12)0.0460 (4)
H9A0.53760.49070.24330.055*
H9B0.53310.54860.34070.055*
C100.5468 (2)0.39090 (12)0.35713 (12)0.0481 (4)
H100.57940.39770.42330.058*
C110.89795 (19)0.46356 (14)0.16573 (11)0.0485 (4)
C120.8750 (2)0.57663 (15)0.16860 (12)0.0551 (4)
C130.9784 (2)0.4157 (2)0.08268 (13)0.0680 (5)
H13A1.00690.34630.09780.102*
H13B1.07150.45410.06760.102*
H13C0.90850.41590.02930.102*
C140.6368 (3)0.20772 (17)0.38296 (16)0.0726 (6)
H14A0.68740.22790.44080.109*
H14B0.69350.15160.35510.109*
H14C0.53070.18670.39610.109*
C150.6863 (2)0.22373 (14)0.16241 (14)0.0575 (4)
C160.9771 (2)0.5300 (2)0.40545 (14)0.0762 (7)
H16A1.01630.58730.36860.091*
H16B1.02900.46810.38350.091*
C171.0122 (3)0.5461 (3)0.50483 (17)0.0970 (9)
H17A1.12370.54060.51480.146*
H17B0.95880.49530.54200.146*
H17C0.97730.61330.52340.146*
U11U22U33U12U13U23
O10.0966 (11)0.0798 (10)0.0619 (8)−0.0179 (9)0.0110 (8)0.0133 (8)
O20.0652 (7)0.0444 (6)0.0572 (7)−0.0037 (5)0.0106 (6)−0.0012 (5)
O30.0483 (6)0.0539 (6)0.0718 (7)0.0118 (5)−0.0004 (6)−0.0224 (6)
O40.0807 (10)0.0882 (11)0.0828 (10)−0.0103 (9)0.0044 (8)−0.0454 (9)
O50.0490 (6)0.0629 (7)0.0422 (6)−0.0064 (5)0.0061 (5)−0.0128 (5)
C10.0469 (9)0.0657 (12)0.0800 (13)−0.0003 (9)0.0186 (9)0.0034 (10)
C20.0406 (8)0.0616 (10)0.1014 (15)−0.0028 (8)0.0023 (10)0.0036 (11)
C30.0480 (9)0.0559 (9)0.0707 (11)−0.0084 (7)−0.0062 (8)−0.0015 (9)
C40.0457 (8)0.0414 (8)0.0580 (9)−0.0049 (6)−0.0002 (7)−0.0044 (7)
C50.0457 (8)0.0435 (8)0.0510 (9)0.0038 (6)0.0009 (7)0.0012 (7)
C60.0404 (7)0.0469 (8)0.0497 (8)0.0094 (6)−0.0042 (7)−0.0087 (7)
C70.0349 (7)0.0486 (8)0.0412 (7)0.0026 (6)−0.0023 (6)−0.0095 (6)
C80.0452 (8)0.0428 (8)0.0427 (8)−0.0009 (6)0.0051 (6)−0.0042 (6)
C90.0431 (8)0.0442 (8)0.0508 (8)0.0066 (6)0.0069 (7)−0.0044 (7)
C100.0462 (8)0.0507 (9)0.0474 (8)0.0020 (7)0.0096 (7)−0.0004 (7)
C110.0405 (8)0.0662 (10)0.0387 (8)0.0000 (7)0.0016 (6)−0.0077 (7)
C120.0544 (10)0.0647 (10)0.0462 (9)−0.0088 (8)0.0015 (7)0.0037 (8)
C130.0609 (11)0.0976 (15)0.0454 (9)0.0077 (11)0.0106 (8)−0.0129 (10)
C140.0833 (14)0.0608 (12)0.0738 (12)0.0049 (10)0.0043 (11)0.0214 (10)
C150.0575 (10)0.0494 (9)0.0655 (10)−0.0025 (8)−0.0012 (9)−0.0146 (8)
C160.0539 (11)0.1208 (19)0.0537 (11)−0.0224 (12)0.0009 (9)−0.0185 (12)
C170.0844 (17)0.147 (3)0.0600 (13)−0.0186 (16)−0.0166 (11)−0.0009 (15)
O1—C121.200 (2)C6—C71.491 (2)
O2—C81.4484 (19)C7—C81.511 (2)
O2—C121.354 (2)C7—C111.331 (2)
O3—C61.4501 (18)C8—C91.506 (2)
O3—C151.364 (2)C9—H9A0.9700
O4—C151.204 (2)C9—H9B0.9700
O5—C81.3894 (19)C9—C101.533 (2)
O5—C161.427 (2)C10—H100.9800
C1—H1A0.9700C11—C121.487 (3)
C1—H1B0.9700C11—C131.495 (2)
C1—C21.525 (3)C13—H13A0.9600
C1—C101.536 (2)C13—H13B0.9600
C2—H2A0.9700C13—H13C0.9600
C2—H2B0.9700C14—H14A0.9600
C2—C31.485 (3)C14—H14B0.9600
C3—H30.9300C14—H14C0.9600
C3—C41.332 (3)C16—H16A0.9700
C4—C51.498 (2)C16—H16B0.9700
C4—C151.468 (3)C16—C171.452 (3)
C5—C61.566 (2)C17—H17A0.9600
C5—C101.538 (2)C17—H17B0.9600
C5—C141.541 (2)C17—H17C0.9600
C6—H60.9800
C12—O2—C8109.65 (12)C8—C9—C10110.33 (13)
C15—O3—C6109.44 (12)H9A—C9—H9B108.1
C8—O5—C16116.95 (13)C10—C9—H9A109.6
H1A—C1—H1B107.7C10—C9—H9B109.6
C2—C1—H1A108.8C1—C10—C5108.51 (14)
C2—C1—H1B108.8C1—C10—H10108.2
C2—C1—C10113.74 (15)C5—C10—H10108.2
C10—C1—H1A108.8C9—C10—C1110.51 (14)
C10—C1—H1B108.8C9—C10—C5112.97 (13)
C1—C2—H2A108.8C9—C10—H10108.2
C1—C2—H2B108.8C7—C11—C12107.26 (14)
H2A—C2—H2B107.7C7—C11—C13133.06 (18)
C3—C2—C1113.69 (16)C12—C11—C13119.65 (17)
C3—C2—H2A108.8O1—C12—O2121.74 (18)
C3—C2—H2B108.8O1—C12—C11129.02 (18)
C2—C3—H3119.2O2—C12—C11109.25 (14)
C4—C3—C2121.60 (18)C11—C13—H13A109.5
C4—C3—H3119.2C11—C13—H13B109.5
C3—C4—C5125.64 (16)C11—C13—H13C109.5
C3—C4—C15126.34 (18)H13A—C13—H13B109.5
C15—C4—C5107.69 (15)H13A—C13—H13C109.5
C4—C5—C698.85 (13)H13B—C13—H13C109.5
C4—C5—C10110.65 (14)C5—C14—H14A109.5
C4—C5—C14110.58 (15)C5—C14—H14B109.5
C10—C5—C6117.14 (13)C5—C14—H14C109.5
C10—C5—C14110.67 (15)H14A—C14—H14B109.5
C14—C5—C6108.35 (14)H14A—C14—H14C109.5
O3—C6—C5104.38 (13)H14B—C14—H14C109.5
O3—C6—H6109.7O3—C15—C4108.67 (14)
O3—C6—C7110.13 (12)O4—C15—O3120.78 (18)
C5—C6—H6109.7O4—C15—C4130.56 (19)
C7—C6—C5112.97 (12)O5—C16—H16A109.7
C7—C6—H6109.7O5—C16—H16B109.7
C6—C7—C8116.21 (13)O5—C16—C17109.64 (19)
C11—C7—C6133.40 (14)H16A—C16—H16B108.2
C11—C7—C8110.06 (14)C17—C16—H16A109.7
O2—C8—C7103.73 (12)C17—C16—H16B109.7
O2—C8—C9111.14 (14)C16—C17—H17A109.5
O5—C8—O2109.54 (13)C16—C17—H17B109.5
O5—C8—C7115.69 (14)C16—C17—H17C109.5
O5—C8—C9106.89 (13)H17A—C17—H17B109.5
C9—C8—C7109.89 (13)H17A—C17—H17C109.5
C8—C9—H9A109.6H17B—C17—H17C109.5
C8—C9—H9B109.6
O2—C8—C9—C10176.04 (12)C7—C11—C12—O1178.38 (19)
O3—C6—C7—C8157.37 (13)C7—C11—C12—O2−1.6 (2)
O3—C6—C7—C11−15.2 (2)C8—O2—C12—O1−179.84 (17)
O5—C8—C9—C10−64.47 (16)C8—O2—C12—C110.15 (19)
C1—C2—C3—C4−8.3 (3)C8—O5—C16—C17176.9 (2)
C2—C1—C10—C5−58.3 (2)C8—C7—C11—C122.34 (18)
C2—C1—C10—C966.0 (2)C8—C7—C11—C13−175.70 (18)
C2—C3—C4—C51.3 (3)C8—C9—C10—C1−174.70 (14)
C2—C3—C4—C15−171.17 (17)C8—C9—C10—C5−52.92 (19)
C3—C4—C5—C6−146.24 (17)C10—C1—C2—C337.6 (2)
C3—C4—C5—C10−22.7 (2)C10—C5—C6—O3−151.01 (14)
C3—C4—C5—C14100.3 (2)C10—C5—C6—C7−31.4 (2)
C3—C4—C15—O3160.45 (17)C11—C7—C8—O2−2.24 (17)
C3—C4—C15—O4−20.1 (3)C11—C7—C8—O5−122.21 (15)
C4—C5—C6—O3−32.27 (14)C11—C7—C8—C9116.66 (15)
C4—C5—C6—C787.37 (15)C12—O2—C8—O5125.24 (14)
C4—C5—C10—C148.68 (18)C12—O2—C8—C71.17 (17)
C4—C5—C10—C9−74.22 (17)C12—O2—C8—C9−116.86 (15)
C5—C4—C15—O3−13.11 (19)C13—C11—C12—O1−3.3 (3)
C5—C4—C15—O4166.4 (2)C13—C11—C12—O2176.75 (15)
C5—C6—C7—C841.10 (18)C14—C5—C6—O382.97 (16)
C5—C6—C7—C11−131.49 (18)C14—C5—C6—C7−157.39 (14)
C6—O3—C15—O4171.11 (18)C14—C5—C10—C1−74.25 (19)
C6—O3—C15—C4−9.36 (19)C14—C5—C10—C9162.84 (15)
C6—C5—C10—C1160.89 (15)C15—O3—C6—C526.98 (17)
C6—C5—C10—C938.0 (2)C15—O3—C6—C7−94.55 (16)
C6—C7—C8—O2−176.51 (13)C15—C4—C5—C627.38 (16)
C6—C7—C8—O563.51 (18)C15—C4—C5—C10150.88 (14)
C6—C7—C8—C9−57.62 (18)C15—C4—C5—C14−86.13 (17)
C6—C7—C11—C12175.26 (16)C16—O5—C8—O2−64.2 (2)
C6—C7—C11—C13−2.8 (3)C16—O5—C8—C752.5 (2)
C7—C8—C9—C1061.80 (17)C16—O5—C8—C9175.24 (17)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Eremophilane-type sesquiterpene derivatives from the roots of Ligularia lapathifolia.

Authors:  Dong-Qing Fei; Shi-Gang Li; Chun-Mei Liu; Gang Wu; Kun Gao
Journal:  J Nat Prod       Date:  2007-02-07       Impact factor: 4.050

  2 in total

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