| Literature DB >> 24046650 |
Dong-Qing Fei1, Le-Le Dong, Hui-Hong Li, Zhan-Xin Zhang.
Abstract
The title compound, C17H20O5, an eremophilane sesquiternoid, was isolated from the roots of Ligularia lapathifolia. The mol-ecule contains four fused rings of which the six-membered ring A adopts a half-chair conformation, the six-membered ring B adopts a chair conformation, the five-membered ring C is almost planar (r.m.s. deviation = 0.015 Å) and the five-membered ring D adopts an envelope conformation with the quaternary C atom as the flap. The methyl and the eth-oxy groups adopt a syn conformation and the A/B ring junction is cis-fused. No directional inter-molecular inter-actions could be identified in the crystal.Entities:
Year: 2013 PMID: 24046650 PMCID: PMC3770365 DOI: 10.1107/S1600536813015729
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H20O5 | |
| Cu | |
| Orthorhombic, | Cell parameters from 9242 reflections |
| θ = 4.6–70.7° | |
| µ = 0.78 mm−1 | |
| Block, colourless | |
| 0.33 × 0.28 × 0.12 mm | |
| Agilent SuperNova (Dual, Cu at zero, Eos) diffractometer | 2994 independent reflections |
| Radiation source: SuperNova (Cu) X-ray Source | 2871 reflections with |
| Mirror monochromator | |
| Detector resolution: 16.0733 pixels mm-1 | θmax = 70.8°, θmin = 4.6° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 14336 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.003 | |
| 2994 reflections | Δρmax = 0.13 e Å−3 |
| 202 parameters | Δρmin = −0.18 e Å−3 |
| 0 restraints | Absolute structure: Flack (1983), 000 Friedel pairs |
| Primary atom site location: iterative | Flack parameter: −0.1 (2) |
| Experimental. CrysAlisPro, Agilent Technologies, Version 1.171.36.28 (release 01-02-2013 CrysAlis171 .NET) (compiled Feb 1 2013,16:14:44) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.9183 (2) | 0.64050 (12) | 0.11330 (10) | 0.0794 (4) | |
| O2 | 0.79269 (15) | 0.60175 (8) | 0.24732 (9) | 0.0556 (3) | |
| O3 | 0.82873 (14) | 0.24550 (10) | 0.20230 (9) | 0.0580 (3) | |
| O4 | 0.6780 (2) | 0.17448 (13) | 0.09057 (11) | 0.0839 (5) | |
| O5 | 0.81102 (14) | 0.52062 (10) | 0.39285 (7) | 0.0514 (3) | |
| C1 | 0.3694 (2) | 0.36787 (16) | 0.35509 (16) | 0.0642 (5) | |
| H1A | 0.3487 | 0.3085 | 0.3945 | 0.077* | |
| H1B | 0.3133 | 0.4257 | 0.3822 | 0.077* | |
| C2 | 0.3051 (2) | 0.34733 (16) | 0.25617 (17) | 0.0678 (5) | |
| H2A | 0.2071 | 0.3096 | 0.2617 | 0.081* | |
| H2B | 0.2818 | 0.4124 | 0.2260 | 0.081* | |
| C3 | 0.4146 (2) | 0.28847 (14) | 0.19487 (14) | 0.0582 (4) | |
| H3 | 0.3795 | 0.2650 | 0.1365 | 0.070* | |
| C4 | 0.5619 (2) | 0.26851 (12) | 0.22151 (12) | 0.0484 (4) | |
| C5 | 0.63488 (19) | 0.29910 (12) | 0.31377 (12) | 0.0467 (4) | |
| C6 | 0.80727 (18) | 0.31837 (12) | 0.27873 (11) | 0.0457 (4) | |
| H6 | 0.8817 | 0.3034 | 0.3299 | 0.055* | |
| C7 | 0.83272 (17) | 0.42502 (11) | 0.24365 (11) | 0.0416 (3) | |
| C8 | 0.75684 (19) | 0.50977 (12) | 0.30066 (11) | 0.0436 (3) | |
| C9 | 0.58186 (19) | 0.49238 (12) | 0.30652 (12) | 0.0460 (4) | |
| H9A | 0.5376 | 0.4907 | 0.2433 | 0.055* | |
| H9B | 0.5331 | 0.5486 | 0.3407 | 0.055* | |
| C10 | 0.5468 (2) | 0.39090 (12) | 0.35713 (12) | 0.0481 (4) | |
| H10 | 0.5794 | 0.3977 | 0.4233 | 0.058* | |
| C11 | 0.89795 (19) | 0.46356 (14) | 0.16573 (11) | 0.0485 (4) | |
| C12 | 0.8750 (2) | 0.57663 (15) | 0.16860 (12) | 0.0551 (4) | |
| C13 | 0.9784 (2) | 0.4157 (2) | 0.08268 (13) | 0.0680 (5) | |
| H13A | 1.0069 | 0.3463 | 0.0978 | 0.102* | |
| H13B | 1.0715 | 0.4541 | 0.0676 | 0.102* | |
| H13C | 0.9085 | 0.4159 | 0.0293 | 0.102* | |
| C14 | 0.6368 (3) | 0.20772 (17) | 0.38296 (16) | 0.0726 (6) | |
| H14A | 0.6874 | 0.2279 | 0.4408 | 0.109* | |
| H14B | 0.6935 | 0.1516 | 0.3551 | 0.109* | |
| H14C | 0.5307 | 0.1867 | 0.3961 | 0.109* | |
| C15 | 0.6863 (2) | 0.22373 (14) | 0.16241 (14) | 0.0575 (4) | |
| C16 | 0.9771 (2) | 0.5300 (2) | 0.40545 (14) | 0.0762 (7) | |
| H16A | 1.0163 | 0.5873 | 0.3686 | 0.091* | |
| H16B | 1.0290 | 0.4681 | 0.3835 | 0.091* | |
| C17 | 1.0122 (3) | 0.5461 (3) | 0.50483 (17) | 0.0970 (9) | |
| H17A | 1.1237 | 0.5406 | 0.5148 | 0.146* | |
| H17B | 0.9588 | 0.4953 | 0.5420 | 0.146* | |
| H17C | 0.9773 | 0.6133 | 0.5234 | 0.146* |
| O1 | 0.0966 (11) | 0.0798 (10) | 0.0619 (8) | −0.0179 (9) | 0.0110 (8) | 0.0133 (8) |
| O2 | 0.0652 (7) | 0.0444 (6) | 0.0572 (7) | −0.0037 (5) | 0.0106 (6) | −0.0012 (5) |
| O3 | 0.0483 (6) | 0.0539 (6) | 0.0718 (7) | 0.0118 (5) | −0.0004 (6) | −0.0224 (6) |
| O4 | 0.0807 (10) | 0.0882 (11) | 0.0828 (10) | −0.0103 (9) | 0.0044 (8) | −0.0454 (9) |
| O5 | 0.0490 (6) | 0.0629 (7) | 0.0422 (6) | −0.0064 (5) | 0.0061 (5) | −0.0128 (5) |
| C1 | 0.0469 (9) | 0.0657 (12) | 0.0800 (13) | −0.0003 (9) | 0.0186 (9) | 0.0034 (10) |
| C2 | 0.0406 (8) | 0.0616 (10) | 0.1014 (15) | −0.0028 (8) | 0.0023 (10) | 0.0036 (11) |
| C3 | 0.0480 (9) | 0.0559 (9) | 0.0707 (11) | −0.0084 (7) | −0.0062 (8) | −0.0015 (9) |
| C4 | 0.0457 (8) | 0.0414 (8) | 0.0580 (9) | −0.0049 (6) | −0.0002 (7) | −0.0044 (7) |
| C5 | 0.0457 (8) | 0.0435 (8) | 0.0510 (9) | 0.0038 (6) | 0.0009 (7) | 0.0012 (7) |
| C6 | 0.0404 (7) | 0.0469 (8) | 0.0497 (8) | 0.0094 (6) | −0.0042 (7) | −0.0087 (7) |
| C7 | 0.0349 (7) | 0.0486 (8) | 0.0412 (7) | 0.0026 (6) | −0.0023 (6) | −0.0095 (6) |
| C8 | 0.0452 (8) | 0.0428 (8) | 0.0427 (8) | −0.0009 (6) | 0.0051 (6) | −0.0042 (6) |
| C9 | 0.0431 (8) | 0.0442 (8) | 0.0508 (8) | 0.0066 (6) | 0.0069 (7) | −0.0044 (7) |
| C10 | 0.0462 (8) | 0.0507 (9) | 0.0474 (8) | 0.0020 (7) | 0.0096 (7) | −0.0004 (7) |
| C11 | 0.0405 (8) | 0.0662 (10) | 0.0387 (8) | 0.0000 (7) | 0.0016 (6) | −0.0077 (7) |
| C12 | 0.0544 (10) | 0.0647 (10) | 0.0462 (9) | −0.0088 (8) | 0.0015 (7) | 0.0037 (8) |
| C13 | 0.0609 (11) | 0.0976 (15) | 0.0454 (9) | 0.0077 (11) | 0.0106 (8) | −0.0129 (10) |
| C14 | 0.0833 (14) | 0.0608 (12) | 0.0738 (12) | 0.0049 (10) | 0.0043 (11) | 0.0214 (10) |
| C15 | 0.0575 (10) | 0.0494 (9) | 0.0655 (10) | −0.0025 (8) | −0.0012 (9) | −0.0146 (8) |
| C16 | 0.0539 (11) | 0.1208 (19) | 0.0537 (11) | −0.0224 (12) | 0.0009 (9) | −0.0185 (12) |
| C17 | 0.0844 (17) | 0.147 (3) | 0.0600 (13) | −0.0186 (16) | −0.0166 (11) | −0.0009 (15) |
| O1—C12 | 1.200 (2) | C6—C7 | 1.491 (2) |
| O2—C8 | 1.4484 (19) | C7—C8 | 1.511 (2) |
| O2—C12 | 1.354 (2) | C7—C11 | 1.331 (2) |
| O3—C6 | 1.4501 (18) | C8—C9 | 1.506 (2) |
| O3—C15 | 1.364 (2) | C9—H9A | 0.9700 |
| O4—C15 | 1.204 (2) | C9—H9B | 0.9700 |
| O5—C8 | 1.3894 (19) | C9—C10 | 1.533 (2) |
| O5—C16 | 1.427 (2) | C10—H10 | 0.9800 |
| C1—H1A | 0.9700 | C11—C12 | 1.487 (3) |
| C1—H1B | 0.9700 | C11—C13 | 1.495 (2) |
| C1—C2 | 1.525 (3) | C13—H13A | 0.9600 |
| C1—C10 | 1.536 (2) | C13—H13B | 0.9600 |
| C2—H2A | 0.9700 | C13—H13C | 0.9600 |
| C2—H2B | 0.9700 | C14—H14A | 0.9600 |
| C2—C3 | 1.485 (3) | C14—H14B | 0.9600 |
| C3—H3 | 0.9300 | C14—H14C | 0.9600 |
| C3—C4 | 1.332 (3) | C16—H16A | 0.9700 |
| C4—C5 | 1.498 (2) | C16—H16B | 0.9700 |
| C4—C15 | 1.468 (3) | C16—C17 | 1.452 (3) |
| C5—C6 | 1.566 (2) | C17—H17A | 0.9600 |
| C5—C10 | 1.538 (2) | C17—H17B | 0.9600 |
| C5—C14 | 1.541 (2) | C17—H17C | 0.9600 |
| C6—H6 | 0.9800 | ||
| C12—O2—C8 | 109.65 (12) | C8—C9—C10 | 110.33 (13) |
| C15—O3—C6 | 109.44 (12) | H9A—C9—H9B | 108.1 |
| C8—O5—C16 | 116.95 (13) | C10—C9—H9A | 109.6 |
| H1A—C1—H1B | 107.7 | C10—C9—H9B | 109.6 |
| C2—C1—H1A | 108.8 | C1—C10—C5 | 108.51 (14) |
| C2—C1—H1B | 108.8 | C1—C10—H10 | 108.2 |
| C2—C1—C10 | 113.74 (15) | C5—C10—H10 | 108.2 |
| C10—C1—H1A | 108.8 | C9—C10—C1 | 110.51 (14) |
| C10—C1—H1B | 108.8 | C9—C10—C5 | 112.97 (13) |
| C1—C2—H2A | 108.8 | C9—C10—H10 | 108.2 |
| C1—C2—H2B | 108.8 | C7—C11—C12 | 107.26 (14) |
| H2A—C2—H2B | 107.7 | C7—C11—C13 | 133.06 (18) |
| C3—C2—C1 | 113.69 (16) | C12—C11—C13 | 119.65 (17) |
| C3—C2—H2A | 108.8 | O1—C12—O2 | 121.74 (18) |
| C3—C2—H2B | 108.8 | O1—C12—C11 | 129.02 (18) |
| C2—C3—H3 | 119.2 | O2—C12—C11 | 109.25 (14) |
| C4—C3—C2 | 121.60 (18) | C11—C13—H13A | 109.5 |
| C4—C3—H3 | 119.2 | C11—C13—H13B | 109.5 |
| C3—C4—C5 | 125.64 (16) | C11—C13—H13C | 109.5 |
| C3—C4—C15 | 126.34 (18) | H13A—C13—H13B | 109.5 |
| C15—C4—C5 | 107.69 (15) | H13A—C13—H13C | 109.5 |
| C4—C5—C6 | 98.85 (13) | H13B—C13—H13C | 109.5 |
| C4—C5—C10 | 110.65 (14) | C5—C14—H14A | 109.5 |
| C4—C5—C14 | 110.58 (15) | C5—C14—H14B | 109.5 |
| C10—C5—C6 | 117.14 (13) | C5—C14—H14C | 109.5 |
| C10—C5—C14 | 110.67 (15) | H14A—C14—H14B | 109.5 |
| C14—C5—C6 | 108.35 (14) | H14A—C14—H14C | 109.5 |
| O3—C6—C5 | 104.38 (13) | H14B—C14—H14C | 109.5 |
| O3—C6—H6 | 109.7 | O3—C15—C4 | 108.67 (14) |
| O3—C6—C7 | 110.13 (12) | O4—C15—O3 | 120.78 (18) |
| C5—C6—H6 | 109.7 | O4—C15—C4 | 130.56 (19) |
| C7—C6—C5 | 112.97 (12) | O5—C16—H16A | 109.7 |
| C7—C6—H6 | 109.7 | O5—C16—H16B | 109.7 |
| C6—C7—C8 | 116.21 (13) | O5—C16—C17 | 109.64 (19) |
| C11—C7—C6 | 133.40 (14) | H16A—C16—H16B | 108.2 |
| C11—C7—C8 | 110.06 (14) | C17—C16—H16A | 109.7 |
| O2—C8—C7 | 103.73 (12) | C17—C16—H16B | 109.7 |
| O2—C8—C9 | 111.14 (14) | C16—C17—H17A | 109.5 |
| O5—C8—O2 | 109.54 (13) | C16—C17—H17B | 109.5 |
| O5—C8—C7 | 115.69 (14) | C16—C17—H17C | 109.5 |
| O5—C8—C9 | 106.89 (13) | H17A—C17—H17B | 109.5 |
| C9—C8—C7 | 109.89 (13) | H17A—C17—H17C | 109.5 |
| C8—C9—H9A | 109.6 | H17B—C17—H17C | 109.5 |
| C8—C9—H9B | 109.6 | ||
| O2—C8—C9—C10 | 176.04 (12) | C7—C11—C12—O1 | 178.38 (19) |
| O3—C6—C7—C8 | 157.37 (13) | C7—C11—C12—O2 | −1.6 (2) |
| O3—C6—C7—C11 | −15.2 (2) | C8—O2—C12—O1 | −179.84 (17) |
| O5—C8—C9—C10 | −64.47 (16) | C8—O2—C12—C11 | 0.15 (19) |
| C1—C2—C3—C4 | −8.3 (3) | C8—O5—C16—C17 | 176.9 (2) |
| C2—C1—C10—C5 | −58.3 (2) | C8—C7—C11—C12 | 2.34 (18) |
| C2—C1—C10—C9 | 66.0 (2) | C8—C7—C11—C13 | −175.70 (18) |
| C2—C3—C4—C5 | 1.3 (3) | C8—C9—C10—C1 | −174.70 (14) |
| C2—C3—C4—C15 | −171.17 (17) | C8—C9—C10—C5 | −52.92 (19) |
| C3—C4—C5—C6 | −146.24 (17) | C10—C1—C2—C3 | 37.6 (2) |
| C3—C4—C5—C10 | −22.7 (2) | C10—C5—C6—O3 | −151.01 (14) |
| C3—C4—C5—C14 | 100.3 (2) | C10—C5—C6—C7 | −31.4 (2) |
| C3—C4—C15—O3 | 160.45 (17) | C11—C7—C8—O2 | −2.24 (17) |
| C3—C4—C15—O4 | −20.1 (3) | C11—C7—C8—O5 | −122.21 (15) |
| C4—C5—C6—O3 | −32.27 (14) | C11—C7—C8—C9 | 116.66 (15) |
| C4—C5—C6—C7 | 87.37 (15) | C12—O2—C8—O5 | 125.24 (14) |
| C4—C5—C10—C1 | 48.68 (18) | C12—O2—C8—C7 | 1.17 (17) |
| C4—C5—C10—C9 | −74.22 (17) | C12—O2—C8—C9 | −116.86 (15) |
| C5—C4—C15—O3 | −13.11 (19) | C13—C11—C12—O1 | −3.3 (3) |
| C5—C4—C15—O4 | 166.4 (2) | C13—C11—C12—O2 | 176.75 (15) |
| C5—C6—C7—C8 | 41.10 (18) | C14—C5—C6—O3 | 82.97 (16) |
| C5—C6—C7—C11 | −131.49 (18) | C14—C5—C6—C7 | −157.39 (14) |
| C6—O3—C15—O4 | 171.11 (18) | C14—C5—C10—C1 | −74.25 (19) |
| C6—O3—C15—C4 | −9.36 (19) | C14—C5—C10—C9 | 162.84 (15) |
| C6—C5—C10—C1 | 160.89 (15) | C15—O3—C6—C5 | 26.98 (17) |
| C6—C5—C10—C9 | 38.0 (2) | C15—O3—C6—C7 | −94.55 (16) |
| C6—C7—C8—O2 | −176.51 (13) | C15—C4—C5—C6 | 27.38 (16) |
| C6—C7—C8—O5 | 63.51 (18) | C15—C4—C5—C10 | 150.88 (14) |
| C6—C7—C8—C9 | −57.62 (18) | C15—C4—C5—C14 | −86.13 (17) |
| C6—C7—C11—C12 | 175.26 (16) | C16—O5—C8—O2 | −64.2 (2) |
| C6—C7—C11—C13 | −2.8 (3) | C16—O5—C8—C7 | 52.5 (2) |
| C7—C8—C9—C10 | 61.80 (17) | C16—O5—C8—C9 | 175.24 (17) |