Literature DB >> 24046639

10-{4-[(2-Hy-droxy-benzyl-idene)amino]-phen-yl}-5,5-di-fluoro-1,3,7,9-tetra-methyl-5H-di-pyrrolo-[1,2-c:2',1'-f][1,3,2]di-aza-borinin-4-ium-5-uide.

Zhensheng Li1.   

Abstract

The title compound, C26H24BF2N3O, comprises a boron-dipyrromethene (BODIPY) framework and a phenolic Schiff base substituent group. The BODIPY unit is close to planar [maximum deviation from the least-squares plane = 0.040 (3) Å], and forms a dihedral angle of 80.38 (13)° with the meso-substituent phenyl ring and an angle of 56.57 (13)° with the phenolic ring in the extended substituent chain. An intra-molecular O-H⋯N hydrogen bond is formed between the phenolic hydroxyl group and the Schiff base N-atom. The crystal studied was a non-merohedral twin with a BASF factor of 0.447 (3) for the two components.

Entities:  

Year:  2013        PMID: 24046639      PMCID: PMC3770354          DOI: 10.1107/S1600536813015523

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the photophysical properties of BODIPY dyes, see: Loudet & Burgess (2007 ▶); Boens et al. (2012 ▶). For the use of related compounds for fluorescence analysis, see: Fan et al. (2012 ▶); Li et al. (2012 ▶). For the preparation of the BODIPY precursor, see: Lu et al. (2009 ▶).

Experimental

Crystal data

C26H24BF2N3O M = 443.29 Triclinic, a = 8.8920 (15) Å b = 10.7480 (17) Å c = 12.9230 (18) Å α = 110.258 (9)° β = 90.952 (6)° γ = 108.408 (7)° V = 1088.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 113 K 0.24 × 0.20 × 0.18 mm

Data collection

Rigaku Saturn724 CCD-detector diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.978, T max = 0.983 12167 measured reflections 5171 independent reflections 2822 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.071 wR(F 2) = 0.217 S = 1.09 5171 reflections 304 parameters H-atom parameters constrained Δρmax = 0.77 e Å−3 Δρmin = −0.44 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku, 2009 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert (Rigaku, 2009 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: CrystalStructure. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813015523/zs2263sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813015523/zs2263Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C26H24BF2N3OZ = 2
Mr = 443.29F(000) = 464
Triclinic, P1Dx = 1.353 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71075 Å
a = 8.8920 (15) ÅCell parameters from 3734 reflections
b = 10.7480 (17) Åθ = 1.7–27.9°
c = 12.9230 (18) ŵ = 0.10 mm1
α = 110.258 (9)°T = 113 K
β = 90.952 (6)°Prism, colorless
γ = 108.408 (7)°0.24 × 0.20 × 0.18 mm
V = 1088.3 (3) Å3
Rigaku Saturn724 CCD-detector diffractometer5171 independent reflections
Radiation source: rotating anode2822 reflections with I > 2σ(I)
Multilayer monochromatorRint = 0.054
Detector resolution: 14.222 pixels mm-1θmax = 28.0°, θmin = 1.7°
ω scansh = −11→11
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −14→14
Tmin = 0.978, Tmax = 0.983l = −16→16
12167 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.071Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.217H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.1035P)2 + 0.5082P] where P = (Fo2 + 2Fc2)/3
5171 reflections(Δ/σ)max < 0.001
304 parametersΔρmax = 0.77 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.8363 (2)0.60168 (18)0.29484 (15)0.0237 (4)
F20.7383 (2)0.73948 (19)0.23512 (15)0.0258 (5)
O1−0.5899 (3)0.0147 (3)0.1083 (2)0.0422 (7)
H1−0.48990.05340.11820.063*
N10.5942 (3)0.6362 (3)0.3580 (2)0.0185 (6)
N20.5944 (3)0.4878 (3)0.1630 (2)0.0172 (5)
N3−0.2990 (3)0.1062 (3)0.2134 (2)0.0273 (7)
C10.6416 (4)0.7349 (3)0.4619 (3)0.0216 (7)
C20.5163 (4)0.7140 (3)0.5250 (3)0.0248 (7)
H20.51900.76950.60080.030*
C30.3881 (4)0.5993 (3)0.4586 (3)0.0214 (7)
C40.4365 (4)0.5496 (3)0.3526 (2)0.0177 (6)
C50.3579 (4)0.4373 (3)0.2536 (2)0.0176 (6)
C60.4352 (4)0.4064 (3)0.1602 (2)0.0178 (6)
C70.3803 (4)0.3018 (3)0.0502 (2)0.0191 (7)
C80.5079 (4)0.3232 (3)−0.0097 (3)0.0224 (7)
H80.50780.2698−0.08560.027*
C90.6371 (4)0.4374 (3)0.0616 (3)0.0204 (7)
C100.8032 (4)0.8467 (3)0.4960 (3)0.0290 (8)
H10A0.88510.80340.49580.043*
H10B0.80890.91450.57100.043*
H10C0.82180.89560.44340.043*
C110.2300 (4)0.5436 (4)0.4972 (3)0.0275 (8)
H11A0.20040.44140.47710.041*
H11B0.14730.56340.46120.041*
H11C0.23990.58970.57820.041*
C120.2217 (4)0.1875 (3)0.0032 (3)0.0261 (8)
H12A0.20710.1566−0.07820.039*
H12B0.13640.22340.03250.039*
H12C0.21740.10750.02450.039*
C130.8007 (4)0.4954 (4)0.0331 (3)0.0260 (7)
H13A0.83500.59860.06110.039*
H13B0.79770.4587−0.04800.039*
H13C0.87630.46670.06740.039*
C140.1879 (4)0.3498 (3)0.2468 (2)0.0186 (7)
C150.0661 (4)0.3993 (3)0.2304 (3)0.0214 (7)
H150.09230.49090.22780.026*
C16−0.0932 (4)0.3161 (3)0.2177 (3)0.0230 (7)
H16−0.17580.34850.20250.028*
C17−0.1317 (4)0.1848 (3)0.2273 (3)0.0211 (7)
C18−0.0107 (4)0.1359 (3)0.2457 (3)0.0240 (7)
H18−0.03680.04670.25270.029*
C190.1484 (4)0.2175 (3)0.2539 (3)0.0218 (7)
H190.23080.18260.26450.026*
C20−0.3510 (4)0.0379 (3)0.2744 (3)0.0273 (8)
H20−0.27800.03840.32920.033*
C21−0.5211 (4)−0.0427 (3)0.2635 (3)0.0269 (8)
C22−0.6322 (4)−0.0491 (3)0.1813 (3)0.0294 (8)
C23−0.7950 (4)−0.1246 (4)0.1738 (3)0.0355 (9)
H23−0.8707−0.13020.11810.043*
C24−0.8441 (4)−0.1901 (4)0.2471 (3)0.0360 (9)
H24−0.9546−0.24050.24260.043*
C25−0.7343 (5)−0.1839 (4)0.3286 (3)0.0375 (9)
H25−0.7702−0.23020.37890.045*
C26−0.5743 (5)−0.1111 (4)0.3362 (3)0.0329 (9)
H26−0.4998−0.10760.39160.039*
B10.6956 (4)0.6192 (4)0.2632 (3)0.0195 (7)
U11U22U33U12U13U23
F10.0179 (9)0.0254 (10)0.0253 (10)0.0075 (8)0.0021 (8)0.0066 (8)
F20.0269 (10)0.0216 (9)0.0261 (10)0.0038 (8)0.0033 (8)0.0098 (8)
O10.0268 (14)0.0541 (18)0.0488 (17)0.0098 (14)−0.0003 (13)0.0267 (15)
N10.0176 (13)0.0181 (12)0.0159 (13)0.0047 (10)0.0004 (10)0.0029 (10)
N20.0160 (13)0.0191 (12)0.0155 (13)0.0063 (10)0.0038 (10)0.0052 (10)
N30.0239 (15)0.0224 (14)0.0331 (16)0.0067 (12)0.0118 (13)0.0079 (13)
C10.0250 (17)0.0182 (15)0.0190 (16)0.0086 (13)0.0000 (13)0.0027 (13)
C20.0324 (19)0.0231 (16)0.0151 (15)0.0110 (14)0.0040 (14)0.0011 (13)
C30.0245 (17)0.0229 (16)0.0186 (16)0.0117 (13)0.0048 (13)0.0066 (13)
C40.0178 (15)0.0177 (14)0.0171 (15)0.0053 (12)0.0039 (12)0.0063 (12)
C50.0181 (15)0.0160 (14)0.0193 (15)0.0073 (12)0.0025 (12)0.0059 (12)
C60.0167 (15)0.0169 (14)0.0176 (15)0.0051 (12)0.0001 (12)0.0046 (12)
C70.0217 (16)0.0206 (15)0.0156 (15)0.0104 (13)0.0007 (12)0.0047 (13)
C80.0261 (17)0.0235 (16)0.0164 (15)0.0099 (14)0.0053 (13)0.0047 (13)
C90.0213 (16)0.0251 (16)0.0192 (16)0.0128 (13)0.0071 (13)0.0087 (13)
C100.0288 (19)0.0207 (16)0.0249 (18)0.0017 (14)−0.0013 (14)−0.0001 (14)
C110.0307 (19)0.0297 (18)0.0207 (17)0.0111 (15)0.0114 (14)0.0066 (14)
C120.0249 (18)0.0234 (16)0.0213 (17)0.0043 (14)−0.0049 (14)0.0018 (14)
C130.0235 (17)0.0340 (18)0.0242 (18)0.0122 (15)0.0100 (14)0.0126 (15)
C140.0178 (15)0.0194 (15)0.0158 (15)0.0051 (12)0.0037 (12)0.0042 (12)
C150.0202 (16)0.0188 (15)0.0243 (17)0.0074 (13)0.0072 (13)0.0061 (13)
C160.0210 (16)0.0226 (16)0.0283 (18)0.0093 (13)0.0059 (14)0.0111 (14)
C170.0174 (15)0.0189 (15)0.0221 (16)0.0037 (12)0.0047 (13)0.0041 (13)
C180.0243 (17)0.0184 (15)0.0251 (17)0.0046 (13)0.0035 (14)0.0056 (13)
C190.0203 (16)0.0223 (15)0.0219 (16)0.0075 (13)0.0020 (13)0.0072 (13)
C200.0262 (18)0.0245 (17)0.0284 (19)0.0117 (15)0.0027 (15)0.0037 (15)
C210.0240 (17)0.0195 (16)0.0313 (19)0.0086 (14)0.0047 (15)0.0016 (14)
C220.032 (2)0.0220 (17)0.037 (2)0.0103 (15)0.0113 (16)0.0136 (16)
C230.0208 (18)0.0281 (18)0.053 (2)0.0094 (15)0.0026 (17)0.0091 (18)
C240.0215 (18)0.0222 (17)0.055 (2)0.0030 (15)0.0114 (18)0.0067 (17)
C250.036 (2)0.0267 (18)0.045 (2)0.0083 (17)0.0147 (19)0.0104 (17)
C260.038 (2)0.0262 (18)0.038 (2)0.0154 (16)0.0110 (17)0.0119 (16)
B10.0170 (17)0.0195 (16)0.0197 (18)0.0061 (14)0.0024 (14)0.0047 (14)
F1—B11.397 (4)C11—H11B0.9800
F2—B11.402 (4)C11—H11C0.9800
O1—C221.341 (4)C12—H12A0.9800
O1—H10.8400C12—H12B0.9800
N1—C11.348 (4)C12—H12C0.9800
N1—C41.402 (4)C13—H13A0.9800
N1—B11.528 (4)C13—H13B0.9800
N2—C91.345 (4)C13—H13C0.9800
N2—C61.401 (4)C14—C191.389 (4)
N2—B11.541 (4)C14—C151.392 (4)
N3—C201.254 (4)C15—C161.387 (4)
N3—C171.432 (4)C15—H150.9500
C1—C21.398 (4)C16—C171.393 (4)
C1—C101.492 (4)C16—H160.9500
C2—C31.379 (4)C17—C181.388 (5)
C2—H20.9500C18—C191.389 (4)
C3—C41.416 (4)C18—H180.9500
C3—C111.510 (4)C19—H190.9500
C4—C51.397 (4)C20—C211.462 (5)
C5—C61.390 (4)C20—H200.9500
C5—C141.489 (4)C21—C261.386 (5)
C6—C71.431 (4)C21—C221.407 (5)
C7—C81.388 (4)C22—C231.401 (5)
C7—C121.493 (4)C23—C241.366 (5)
C8—C91.402 (4)C23—H230.9500
C8—H80.9500C24—C251.394 (6)
C9—C131.498 (4)C24—H240.9500
C10—H10A0.9800C25—C261.373 (5)
C10—H10B0.9800C25—H250.9500
C10—H10C0.9800C26—H260.9500
C11—H11A0.9800
C22—O1—H1109.5H12B—C12—H12C109.5
C1—N1—C4108.1 (2)C9—C13—H13A109.5
C1—N1—B1126.1 (3)C9—C13—H13B109.5
C4—N1—B1125.7 (3)H13A—C13—H13B109.5
C9—N2—C6108.2 (2)C9—C13—H13C109.5
C9—N2—B1126.7 (3)H13A—C13—H13C109.5
C6—N2—B1124.9 (2)H13B—C13—H13C109.5
C20—N3—C17120.2 (3)C19—C14—C15119.2 (3)
N1—C1—C2109.0 (3)C19—C14—C5121.0 (3)
N1—C1—C10122.3 (3)C15—C14—C5119.7 (3)
C2—C1—C10128.7 (3)C16—C15—C14120.6 (3)
C3—C2—C1108.6 (3)C16—C15—H15119.7
C3—C2—H2125.7C14—C15—H15119.7
C1—C2—H2125.7C15—C16—C17119.7 (3)
C2—C3—C4106.5 (3)C15—C16—H16120.1
C2—C3—C11124.4 (3)C17—C16—H16120.1
C4—C3—C11129.2 (3)C18—C17—C16119.9 (3)
C5—C4—N1120.1 (3)C18—C17—N3124.0 (3)
C5—C4—C3132.1 (3)C16—C17—N3116.1 (3)
N1—C4—C3107.8 (3)C17—C18—C19120.0 (3)
C6—C5—C4121.0 (3)C17—C18—H18120.0
C6—C5—C14119.2 (3)C19—C18—H18120.0
C4—C5—C14119.8 (3)C14—C19—C18120.5 (3)
C5—C6—N2120.8 (3)C14—C19—H19119.8
C5—C6—C7131.5 (3)C18—C19—H19119.8
N2—C6—C7107.7 (2)N3—C20—C21121.8 (3)
C8—C7—C6106.3 (3)N3—C20—H20119.1
C8—C7—C12124.0 (3)C21—C20—H20119.1
C6—C7—C12129.7 (3)C26—C21—C22119.5 (3)
C7—C8—C9108.0 (3)C26—C21—C20119.8 (3)
C7—C8—H8126.0C22—C21—C20120.7 (3)
C9—C8—H8126.0O1—C22—C23117.4 (3)
N2—C9—C8109.7 (3)O1—C22—C21122.9 (3)
N2—C9—C13123.8 (3)C23—C22—C21119.7 (3)
C8—C9—C13126.5 (3)C24—C23—C22119.5 (4)
C1—C10—H10A109.5C24—C23—H23120.3
C1—C10—H10B109.5C22—C23—H23120.3
H10A—C10—H10B109.5C23—C24—C25120.9 (3)
C1—C10—H10C109.5C23—C24—H24119.5
H10A—C10—H10C109.5C25—C24—H24119.5
H10B—C10—H10C109.5C26—C25—C24120.1 (4)
C3—C11—H11A109.5C26—C25—H25120.0
C3—C11—H11B109.5C24—C25—H25120.0
H11A—C11—H11B109.5C25—C26—C21120.3 (4)
C3—C11—H11C109.5C25—C26—H26119.9
H11A—C11—H11C109.5C21—C26—H26119.9
H11B—C11—H11C109.5F1—B1—F2108.0 (3)
C7—C12—H12A109.5F1—B1—N1110.6 (3)
C7—C12—H12B109.5F2—B1—N1110.3 (3)
H12A—C12—H12B109.5F1—B1—N2110.0 (3)
C7—C12—H12C109.5F2—B1—N2110.5 (3)
H12A—C12—H12C109.5N1—B1—N2107.4 (2)
C4—N1—C1—C2−0.1 (4)C4—C5—C14—C19−102.0 (4)
B1—N1—C1—C2−178.8 (3)C6—C5—C14—C15−99.7 (4)
C4—N1—C1—C10−178.7 (3)C4—C5—C14—C1579.6 (4)
B1—N1—C1—C102.6 (5)C19—C14—C15—C16−2.0 (5)
N1—C1—C2—C30.2 (4)C5—C14—C15—C16176.4 (3)
C10—C1—C2—C3178.7 (3)C14—C15—C16—C173.4 (5)
C1—C2—C3—C4−0.2 (4)C15—C16—C17—C18−2.1 (5)
C1—C2—C3—C11180.0 (3)C15—C16—C17—N3179.7 (3)
C1—N1—C4—C5−179.7 (3)C20—N3—C17—C1841.8 (4)
B1—N1—C4—C5−1.0 (5)C20—N3—C17—C16−140.2 (3)
C1—N1—C4—C3−0.1 (3)C16—C17—C18—C19−0.4 (5)
B1—N1—C4—C3178.6 (3)N3—C17—C18—C19177.6 (3)
C2—C3—C4—C5179.7 (3)C15—C14—C19—C18−0.6 (5)
C11—C3—C4—C5−0.4 (6)C5—C14—C19—C18−179.0 (3)
C2—C3—C4—N10.2 (3)C17—C18—C19—C141.8 (5)
C11—C3—C4—N1180.0 (3)C17—N3—C20—C21179.5 (3)
N1—C4—C5—C62.1 (5)N3—C20—C21—C26−176.9 (3)
C3—C4—C5—C6−177.4 (3)N3—C20—C21—C221.7 (5)
N1—C4—C5—C14−177.2 (3)C26—C21—C22—O1179.8 (3)
C3—C4—C5—C143.3 (5)C20—C21—C22—O11.1 (5)
C4—C5—C6—N2−0.2 (5)C26—C21—C22—C23−0.1 (5)
C14—C5—C6—N2179.0 (3)C20—C21—C22—C23−178.7 (3)
C4—C5—C6—C7−177.9 (3)O1—C22—C23—C24−179.3 (3)
C14—C5—C6—C71.4 (5)C21—C22—C23—C240.6 (5)
C9—N2—C6—C5−178.4 (3)C22—C23—C24—C25−0.6 (5)
B1—N2—C6—C5−2.9 (4)C23—C24—C25—C260.2 (5)
C9—N2—C6—C7−0.3 (3)C24—C25—C26—C210.4 (5)
B1—N2—C6—C7175.3 (3)C22—C21—C26—C25−0.4 (5)
C5—C6—C7—C8178.0 (3)C20—C21—C26—C25178.3 (3)
N2—C6—C7—C80.1 (3)C1—N1—B1—F156.8 (4)
C5—C6—C7—C12−3.2 (6)C4—N1—B1—F1−121.7 (3)
N2—C6—C7—C12179.0 (3)C1—N1—B1—F2−62.7 (4)
C6—C7—C8—C90.1 (4)C4—N1—B1—F2118.8 (3)
C12—C7—C8—C9−178.9 (3)C1—N1—B1—N2176.9 (3)
C6—N2—C9—C80.3 (3)C4—N1—B1—N2−1.6 (4)
B1—N2—C9—C8−175.1 (3)C9—N2—B1—F1−61.3 (4)
C6—N2—C9—C13−178.5 (3)C6—N2—B1—F1124.0 (3)
B1—N2—C9—C136.1 (5)C9—N2—B1—F257.9 (4)
C7—C8—C9—N2−0.2 (4)C6—N2—B1—F2−116.8 (3)
C7—C8—C9—C13178.5 (3)C9—N2—B1—N1178.2 (3)
C6—C5—C14—C1978.7 (4)C6—N2—B1—N13.5 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1···N30.841.892.618 (4)145
C16—H16···F1i0.952.533.150 (5)123
C24—H24···F1ii0.952.373.235 (5)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N30.841.892.618 (4)145
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Experimentation and theoretic calculation of a BODIPY sensor based on photoinduced electron transfer for ions detection.

Authors:  Hua Lu; ShuShu Zhang; HanZhuang Liu; YanWei Wang; Zhen Shen; ChunGen Liu; XiaoZeng You
Journal:  J Phys Chem A       Date:  2009-12-24       Impact factor: 2.781

3.  BODIPY dyes and their derivatives: syntheses and spectroscopic properties.

Authors:  Aurore Loudet; Kevin Burgess
Journal:  Chem Rev       Date:  2007-10-09       Impact factor: 60.622

Review 4.  Fluorescent indicators based on BODIPY.

Authors:  Noël Boens; Volker Leen; Wim Dehaen
Journal:  Chem Soc Rev       Date:  2011-07-28       Impact factor: 54.564

5.  Development of an oxidative dehydrogenation-based fluorescent probe for Cu2+ and its biological imaging in living cells.

Authors:  Jiangli Fan; Xiaojian Liu; Mingming Hu; Hao Zhu; Fengling Song; Xiaojun Peng
Journal:  Anal Chim Acta       Date:  2012-05-26       Impact factor: 6.558

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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