Literature DB >> 24046635

3-(2,5-Di-methyl-phen-yl)-8-meth-oxy-2-oxo-1-aza-spiro-[4.5]dec-3-en-4-yl 3-(2-bromo-4-fluoro-phen-yl)acrylate.

Bing-Rong Xu1, Xing-Rui He, Jing-Li Cheng, Jin-Hao Zhao.   

Abstract

In the title compound, C27H27BrFNO4, which is an inhibitor of acetyl-CoA carboxyl-ase, the cyclo-hexane ring displays a chair comformation with the spiro-C and meth-oxy-bearing C atoms deviating by 0.681 (7) and -0.655 (1) Å, resppectively, from the mean plane formed by the other four C atoms of the spiro-C6 ring. The mean planes of the cyclo-hexane and 2-bromo-4-fluoro-phenyl rings are nearly perpendicular to that of the pyrrolidine ring, making dihedral angles 89.75 (6) and 87.60 (9)°, respectively. In the crystal, mol-ecules are linked via pairs of N-H⋯O hydrogen bonds, forming inversion dimers.

Entities:  

Year:  2013        PMID: 24046635      PMCID: PMC3772492          DOI: 10.1107/S160053681301430X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pesticide spiro­tetra­mat (systematic name: cis-3-(2,5-di­methyl­phen­yl)-8-meth­oxy-2-oxo-1-aza­spiro­[4.5]dec-3-en-4-yl ethyl carbonate), the central unit of the title compound, see: Fischer & Weiss (2008 ▶); Maus (2008 ▶). For structures of spiro­tetra­mat derivatives, see: Fischer et al. (2010 ▶); Campbell et al. (1985 ▶); Schobert & Schlenk (2008 ▶); Zhao et al. (2012 ▶); Wang et al. (2011 ▶). For the metabolic transformation of spiro­tetra­mat, see: Bruck et al. (2009 ▶).

Experimental

Crystal data

C27H27BrFNO4 M = 528.41 Triclinic, a = 10.5170 (5) Å b = 11.2410 (6) Å c = 12.5150 (7) Å α = 110.364 (2)° β = 102.049 (2)° γ = 107.409 (1)° V = 1239.95 (11) Å3 Z = 2 Mo Kα radiation μ = 1.70 mm−1 T = 296 K 0.48 × 0.45 × 0.24 mm

Data collection

Rigaku R-AXIS RAPID/ZJUG diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.446, T max = 0.665 10805 measured reflections 4845 independent reflections 3433 reflections with I > 2σ(I) R int = 0.035

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.134 S = 1.00 4845 reflections 311 parameters H-atom parameters constrained Δρmax = 0.46 e Å−3 Δρmin = −0.95 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 2006 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681301430X/vm2194sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681301430X/vm2194Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301430X/vm2194Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301430X/vm2194Isup4.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681301430X/vm2194Isup5.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H27BrFNO4Z = 2
Mr = 528.41F(000) = 544
Triclinic, P1Dx = 1.415 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.5170 (5) ÅCell parameters from 8334 reflections
b = 11.2410 (6) Åθ = 3.1–27.4°
c = 12.5150 (7) ŵ = 1.70 mm1
α = 110.364 (2)°T = 296 K
β = 102.049 (2)°Chunk, colorless
γ = 107.409 (1)°0.48 × 0.45 × 0.24 mm
V = 1239.95 (11) Å3
Rigaku R-AXIS RAPID/ZJUG diffractometer4845 independent reflections
Radiation source: rotating anode3433 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.035
Detector resolution: 10.00 pixels mm-1θmax = 26.0°, θmin = 3.1°
ω scansh = −12→12
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −13→13
Tmin = 0.446, Tmax = 0.665l = −15→15
10805 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.134w = 1/[σ2(Fo2) + (0.0452P)2 + 2.4533P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4845 reflectionsΔρmax = 0.46 e Å3
311 parametersΔρmin = −0.95 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.036 (2)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8088 (4)0.4745 (4)0.4082 (4)0.0461 (9)
C20.6693 (4)0.4235 (4)0.3104 (4)0.0427 (9)
C30.5971 (4)0.2940 (4)0.2902 (3)0.0383 (8)
C40.6755 (4)0.2431 (4)0.3664 (3)0.0368 (8)
C50.6237 (4)0.5058 (4)0.2510 (4)0.0478 (10)
C60.7037 (5)0.5696 (4)0.1946 (4)0.0517 (10)
C70.6475 (6)0.6406 (5)0.1396 (4)0.0634 (13)
H70.69910.68520.10260.076*
C80.5196 (6)0.6467 (5)0.1384 (4)0.0648 (13)
H80.48670.69570.10120.078*
C90.4375 (5)0.5814 (4)0.1916 (4)0.0538 (11)
C100.4938 (4)0.5121 (4)0.2489 (4)0.0489 (10)
H100.44220.46890.28680.059*
C110.8437 (6)0.5624 (6)0.1891 (6)0.0758 (15)
H11A0.91950.63440.26210.114*
H11B0.85950.57450.12000.114*
H11C0.84080.47360.18160.114*
C120.2922 (5)0.5783 (6)0.1840 (5)0.0744 (15)
H12A0.29220.66680.19370.112*
H12B0.26720.55840.24730.112*
H12C0.22410.50750.10630.112*
C130.4365 (4)0.1713 (4)0.0883 (3)0.0392 (8)
C140.2895 (4)0.1370 (4)0.0199 (3)0.0389 (8)
H140.25590.0845−0.06400.047*
C150.2014 (4)0.1765 (4)0.0705 (3)0.0368 (8)
H150.23300.21790.15510.044*
C160.0597 (4)0.1620 (4)0.0080 (3)0.0368 (8)
C17−0.0245 (4)0.2068 (4)0.0720 (3)0.0375 (8)
C18−0.1587 (4)0.1930 (4)0.0134 (4)0.0433 (9)
H18−0.21390.22210.05710.052*
C19−0.2076 (4)0.1352 (4)−0.1108 (4)0.0450 (9)
C20−0.1310 (4)0.0910 (4)−0.1794 (4)0.0498 (10)
H20−0.16710.0532−0.26390.060*
C210.0027 (4)0.1043 (4)−0.1186 (4)0.0448 (9)
H210.05610.0738−0.16370.054*
C220.7009 (4)0.1194 (4)0.2883 (3)0.0369 (8)
H22A0.61000.04380.23360.044*
H22B0.75310.14600.23910.044*
C230.7841 (4)0.0692 (4)0.3654 (3)0.0416 (9)
H23A0.7944−0.01130.31240.050*
H23B0.87850.14170.41480.050*
C240.7083 (4)0.0313 (4)0.4473 (3)0.0422 (9)
H240.6171−0.04840.39670.051*
C250.6811 (4)0.1511 (4)0.5247 (4)0.0478 (10)
H25A0.77130.22670.58110.057*
H25B0.62720.12220.57200.057*
C260.5993 (4)0.2028 (4)0.4484 (4)0.0446 (9)
H26A0.58870.28270.50190.054*
H26B0.50500.13050.39830.054*
C270.7981 (6)−0.1319 (5)0.4762 (5)0.0770 (16)
H27A0.7041−0.20300.42820.115*
H27B0.8414−0.15270.53900.115*
H27C0.8543−0.12810.42510.115*
N10.8079 (3)0.3695 (3)0.4373 (3)0.0448 (8)
H10.87790.37580.49200.054*
O10.9056 (3)0.5907 (3)0.4548 (3)0.0610 (9)
O20.7899 (3)−0.0026 (3)0.5295 (3)0.0570 (8)
O30.4596 (2)0.2081 (3)0.2103 (2)0.0393 (6)
O40.5294 (3)0.1721 (3)0.0476 (3)0.0579 (8)
F1−0.3399 (2)0.1198 (3)−0.1697 (3)0.0642 (7)
Br10.04050 (4)0.28752 (5)0.24507 (4)0.0578 (2)
U11U22U33U12U13U23
C10.037 (2)0.041 (2)0.049 (2)0.0123 (17)0.0039 (17)0.0168 (19)
C20.036 (2)0.042 (2)0.043 (2)0.0138 (16)0.0015 (16)0.0204 (18)
C30.0278 (17)0.041 (2)0.039 (2)0.0122 (15)0.0059 (14)0.0151 (17)
C40.0283 (18)0.0381 (19)0.037 (2)0.0086 (14)0.0044 (14)0.0163 (16)
C50.045 (2)0.037 (2)0.044 (2)0.0096 (16)−0.0010 (17)0.0142 (18)
C60.060 (3)0.040 (2)0.048 (2)0.0157 (19)0.014 (2)0.0195 (19)
C70.080 (3)0.050 (3)0.054 (3)0.018 (2)0.016 (2)0.028 (2)
C80.075 (3)0.049 (3)0.059 (3)0.023 (2)0.002 (2)0.026 (2)
C90.060 (3)0.042 (2)0.047 (2)0.021 (2)−0.001 (2)0.016 (2)
C100.048 (2)0.040 (2)0.050 (2)0.0134 (17)0.0057 (18)0.0190 (19)
C110.076 (4)0.077 (4)0.091 (4)0.031 (3)0.042 (3)0.047 (3)
C120.071 (3)0.067 (3)0.082 (4)0.037 (3)0.007 (3)0.033 (3)
C130.0295 (19)0.041 (2)0.042 (2)0.0128 (15)0.0072 (15)0.0181 (17)
C140.0355 (19)0.041 (2)0.0323 (19)0.0132 (15)0.0068 (15)0.0132 (16)
C150.0328 (18)0.043 (2)0.0289 (18)0.0108 (15)0.0071 (14)0.0157 (16)
C160.0298 (18)0.0363 (19)0.041 (2)0.0090 (14)0.0090 (14)0.0187 (16)
C170.0363 (19)0.0359 (19)0.036 (2)0.0109 (15)0.0118 (15)0.0151 (16)
C180.035 (2)0.041 (2)0.057 (3)0.0176 (16)0.0194 (17)0.0208 (19)
C190.0293 (19)0.047 (2)0.059 (3)0.0141 (16)0.0085 (17)0.029 (2)
C200.043 (2)0.058 (3)0.042 (2)0.0150 (19)0.0043 (17)0.026 (2)
C210.036 (2)0.055 (2)0.039 (2)0.0165 (17)0.0084 (16)0.0203 (19)
C220.0361 (19)0.040 (2)0.0355 (19)0.0161 (15)0.0134 (15)0.0172 (16)
C230.041 (2)0.044 (2)0.040 (2)0.0190 (17)0.0126 (16)0.0176 (17)
C240.046 (2)0.046 (2)0.033 (2)0.0185 (17)0.0075 (16)0.0181 (17)
C250.053 (2)0.055 (2)0.040 (2)0.0229 (19)0.0172 (18)0.0237 (19)
C260.043 (2)0.052 (2)0.044 (2)0.0228 (18)0.0163 (17)0.0226 (19)
C270.109 (4)0.055 (3)0.068 (3)0.046 (3)0.015 (3)0.027 (3)
N10.0353 (17)0.0384 (17)0.0474 (19)0.0095 (13)−0.0018 (14)0.0183 (15)
O10.0406 (16)0.0398 (16)0.076 (2)0.0051 (13)−0.0066 (14)0.0217 (15)
O20.080 (2)0.0511 (17)0.0417 (16)0.0353 (16)0.0093 (14)0.0224 (14)
O30.0250 (12)0.0469 (15)0.0410 (14)0.0099 (10)0.0051 (10)0.0214 (12)
O40.0389 (16)0.082 (2)0.0533 (18)0.0284 (15)0.0198 (13)0.0247 (16)
F10.0347 (12)0.0731 (17)0.0796 (18)0.0215 (11)0.0030 (11)0.0380 (15)
Br10.0467 (3)0.0738 (4)0.0435 (3)0.0204 (2)0.01813 (19)0.0176 (2)
C1—O11.228 (5)C15—C161.463 (5)
C1—N11.350 (5)C15—H150.9300
C1—C21.496 (5)C16—C211.395 (5)
C2—C31.327 (5)C16—C171.401 (5)
C2—C51.494 (5)C17—C181.383 (5)
C3—O31.383 (4)C17—Br11.903 (4)
C3—C41.500 (5)C18—C191.367 (6)
C4—N11.473 (4)C18—H180.9300
C4—C261.533 (5)C19—F11.359 (4)
C4—C221.532 (5)C19—C201.366 (6)
C5—C101.385 (6)C20—C211.388 (5)
C5—C61.400 (6)C20—H200.9300
C6—C71.398 (6)C21—H210.9300
C6—C111.513 (7)C22—C231.529 (5)
C7—C81.364 (7)C22—H22A0.9700
C7—H70.9300C22—H22B0.9700
C8—C91.389 (7)C23—C241.520 (5)
C8—H80.9300C23—H23A0.9700
C9—C101.399 (6)C23—H23B0.9700
C9—C121.501 (7)C24—O21.429 (4)
C10—H100.9300C24—C251.508 (6)
C11—H11A0.9600C24—H240.9800
C11—H11B0.9600C25—C261.527 (5)
C11—H11C0.9600C25—H25A0.9700
C12—H12A0.9600C25—H25B0.9700
C12—H12B0.9600C26—H26A0.9700
C12—H12C0.9600C26—H26B0.9700
C13—O41.192 (4)C27—O21.410 (5)
C13—O31.381 (5)C27—H27A0.9600
C13—C141.461 (5)C27—H27B0.9600
C14—C151.324 (5)C27—H27C0.9600
C14—H140.9300N1—H10.8600
O1—C1—N1126.2 (4)C18—C17—C16122.0 (3)
O1—C1—C2126.7 (4)C18—C17—Br1116.8 (3)
N1—C1—C2107.2 (3)C16—C17—Br1121.1 (3)
C3—C2—C5128.4 (3)C19—C18—C17117.8 (3)
C3—C2—C1106.0 (3)C19—C18—H18121.1
C5—C2—C1125.6 (3)C17—C18—H18121.1
C2—C3—O3126.1 (3)F1—C19—C20118.0 (4)
C2—C3—C4114.4 (3)F1—C19—C18118.5 (4)
O3—C3—C4119.5 (3)C20—C19—C18123.5 (3)
N1—C4—C399.0 (3)C19—C20—C21117.6 (4)
N1—C4—C26111.7 (3)C19—C20—H20121.2
C3—C4—C26112.8 (3)C21—C20—H20121.2
N1—C4—C22112.4 (3)C20—C21—C16122.2 (4)
C3—C4—C22111.8 (3)C20—C21—H21118.9
C26—C4—C22108.9 (3)C16—C21—H21118.9
C10—C5—C6120.2 (4)C23—C22—C4112.2 (3)
C10—C5—C2117.0 (4)C23—C22—H22A109.2
C6—C5—C2122.7 (4)C4—C22—H22A109.2
C7—C6—C5117.0 (4)C23—C22—H22B109.2
C7—C6—C11119.8 (4)C4—C22—H22B109.2
C5—C6—C11123.2 (4)H22A—C22—H22B107.9
C8—C7—C6122.3 (5)C24—C23—C22110.8 (3)
C8—C7—H7118.8C24—C23—H23A109.5
C6—C7—H7118.8C22—C23—H23A109.5
C7—C8—C9121.4 (4)C24—C23—H23B109.5
C7—C8—H8119.3C22—C23—H23B109.5
C9—C8—H8119.3H23A—C23—H23B108.1
C8—C9—C10116.9 (4)O2—C24—C25106.3 (3)
C8—C9—C12122.4 (4)O2—C24—C23112.4 (3)
C10—C9—C12120.7 (4)C25—C24—C23110.9 (3)
C5—C10—C9122.2 (4)O2—C24—H24109.0
C5—C10—H10118.9C25—C24—H24109.0
C9—C10—H10118.9C23—C24—H24109.0
C6—C11—H11A109.5C24—C25—C26112.1 (3)
C6—C11—H11B109.5C24—C25—H25A109.2
H11A—C11—H11B109.5C26—C25—H25A109.2
C6—C11—H11C109.5C24—C25—H25B109.2
H11A—C11—H11C109.5C26—C25—H25B109.2
H11B—C11—H11C109.5H25A—C25—H25B107.9
C9—C12—H12A109.5C25—C26—C4111.7 (3)
C9—C12—H12B109.5C25—C26—H26A109.3
H12A—C12—H12B109.5C4—C26—H26A109.3
C9—C12—H12C109.5C25—C26—H26B109.3
H12A—C12—H12C109.5C4—C26—H26B109.3
H12B—C12—H12C109.5H26A—C26—H26B107.9
O4—C13—O3122.2 (3)O2—C27—H27A109.5
O4—C13—C14125.7 (4)O2—C27—H27B109.5
O3—C13—C14112.1 (3)H27A—C27—H27B109.5
C15—C14—C13123.8 (3)O2—C27—H27C109.5
C15—C14—H14118.1H27A—C27—H27C109.5
C13—C14—H14118.1H27B—C27—H27C109.5
C14—C15—C16127.1 (3)C1—N1—C4113.4 (3)
C14—C15—H15116.4C1—N1—H1123.3
C16—C15—H15116.4C4—N1—H1123.3
C21—C16—C17116.8 (3)C27—O2—C24115.2 (3)
C21—C16—C15121.4 (3)C13—O3—C3116.7 (3)
C17—C16—C15121.8 (3)
O1—C1—C2—C3−178.7 (4)C21—C16—C17—C180.9 (5)
N1—C1—C2—C30.4 (5)C15—C16—C17—C18−179.8 (3)
O1—C1—C2—C50.7 (7)C21—C16—C17—Br1−180.0 (3)
N1—C1—C2—C5179.8 (4)C15—C16—C17—Br1−0.7 (5)
C5—C2—C3—O3−2.3 (7)C16—C17—C18—C19−0.8 (6)
C1—C2—C3—O3177.1 (4)Br1—C17—C18—C19−180.0 (3)
C5—C2—C3—C4179.9 (4)C17—C18—C19—F1179.4 (3)
C1—C2—C3—C4−0.8 (5)C17—C18—C19—C20−0.1 (6)
C2—C3—C4—N10.8 (4)F1—C19—C20—C21−178.6 (3)
O3—C3—C4—N1−177.2 (3)C18—C19—C20—C210.9 (6)
C2—C3—C4—C26119.1 (4)C19—C20—C21—C16−0.8 (6)
O3—C3—C4—C26−58.9 (4)C17—C16—C21—C20−0.1 (6)
C2—C3—C4—C22−117.7 (4)C15—C16—C21—C20−179.4 (4)
O3—C3—C4—C2264.2 (4)N1—C4—C22—C2368.2 (4)
C3—C2—C5—C1051.7 (6)C3—C4—C22—C23178.5 (3)
C1—C2—C5—C10−127.5 (4)C26—C4—C22—C23−56.1 (4)
C3—C2—C5—C6−125.6 (5)C4—C22—C23—C2456.8 (4)
C1—C2—C5—C655.2 (6)C22—C23—C24—O2−174.0 (3)
C10—C5—C6—C71.2 (6)C22—C23—C24—C25−55.1 (4)
C2—C5—C6—C7178.4 (4)O2—C24—C25—C26177.6 (3)
C10—C5—C6—C11−177.6 (4)C23—C24—C25—C2655.1 (4)
C2—C5—C6—C11−0.4 (7)C24—C25—C26—C4−55.9 (5)
C5—C6—C7—C8−1.0 (7)N1—C4—C26—C25−69.6 (4)
C11—C6—C7—C8177.9 (5)C3—C4—C26—C25179.9 (3)
C6—C7—C8—C9−0.4 (8)C22—C4—C26—C2555.1 (4)
C7—C8—C9—C101.5 (7)O1—C1—N1—C4179.2 (4)
C7—C8—C9—C12−175.7 (5)C2—C1—N1—C40.1 (5)
C6—C5—C10—C9−0.1 (6)C3—C4—N1—C1−0.5 (4)
C2—C5—C10—C9−177.4 (4)C26—C4—N1—C1−119.6 (4)
C8—C9—C10—C5−1.3 (6)C22—C4—N1—C1117.6 (4)
C12—C9—C10—C5176.0 (4)C25—C24—O2—C27165.5 (4)
O4—C13—C14—C15−158.5 (4)C23—C24—O2—C27−73.0 (5)
O3—C13—C14—C1519.6 (5)O4—C13—O3—C323.9 (5)
C13—C14—C15—C16171.6 (3)C14—C13—O3—C3−154.3 (3)
C14—C15—C16—C21−1.4 (6)C2—C3—O3—C1364.2 (5)
C14—C15—C16—C17179.3 (4)C4—C3—O3—C13−118.0 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.112.859 (4)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.862.112.859 (4)145

Symmetry code: (i) .

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1.  Design, synthesis, and analysis of the quantitative structure-activity relationships of 4-phenyl-acyl-substituted 3-(2,5-dimethylphenyl)-4-hydroxy-1-azaspiro[4.5]dec-3-ene-2,8-dione derivatives.

Authors:  Jinhao Zhao; Jiangong Zhang; Bingrong Xu; Zongcheng Wang; Jingli Cheng; Guonian Zhu
Journal:  J Agric Food Chem       Date:  2012-05-03       Impact factor: 5.279

Review 2.  Tetramic and tetronic acids: an update on new derivatives and biological aspects.

Authors:  Rainer Schobert; Andrea Schlenk
Journal:  Bioorg Med Chem       Date:  2008-02-26       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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