Literature DB >> 24046632

4,4'-Dimethyl-2,2'-{[2,3,3a,4,5,6,7,7a-octa-hydro-1H-benzimidazole-1,3-di-yl]bis-(methyl-ene)}diphenol.

Augusto Rivera1, Héctor Jairo Osorio, Mauricio Maldonado, Jaime Ríos-Motta, Michael Bolte.   

Abstract

The asymmetric unit of the title compound, C23H30N2O2, contains one half-mol-ecule, with a twofold axis splitting the mol-ecule in two identical halves. The structure of the racemic mixture has been reported previously [Rivera et al. (2009 ▶) J. Chem. Crystallogr. 39, 827-830] but the enanti-omer reported here crystallized in the ortho-rhom-bic space group P21212 (Z = 2), whereas the racemate occurs in the triclinic space group P-1 (Z = 2). The observed mol-ecular conformation is stabilized by two intra-molecular O-H⋯N hydrogen bonds, which generate rings with graph-set motif S(6). In the crystal, mol-ecules are linked via non-classical C-H⋯O inter-actions, which stack the mol-ecules along the b axis.

Entities:  

Year:  2013        PMID: 24046632      PMCID: PMC3772489          DOI: 10.1107/S1600536813015237

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the original racemate, see: Rivera et al. (2009 ▶). For the use of 1,3-di­aza­heterocyclic-bridged bis­(phenols) in coordination chemistry, see: Kober et al. (2012 ▶); Xu et al. (2007 ▶). For the synthesis of the precursor, (2R,7R)- 1,8,10,12-tetra­aza­tetra­cyclo­[8.3.118,12.02,7]penta­decane, see: Rivera et al. (2012 ▶). For bond-length data, see: Allen et al. (1987 ▶). For graph-set analysis, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C23H30N2O2 M = 366.49 Orthorhombic, a = 18.5417 (9) Å b = 6.0597 (4) Å c = 8.9415 (5) Å V = 1004.64 (10) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 173 K 0.31 × 0.27 × 0.12 mm

Data collection

STOE IPDS II two-circle-diffractometer Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001 ▶) T min = 0.976, T max = 0.991 12723 measured reflections 2168 independent reflections 2058 reflections with I > 2σ(I) R int = 0.053

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.090 S = 1.04 2168 reflections 129 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.14 e Å−3 Δρmin = −0.13 e Å−3 Data collection: X-AREA (Stoe & Cie, 2001 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2012 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL-Plus (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL2012. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813015237/sj5327sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813015237/sj5327Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H30N2O2Dx = 1.212 Mg m3
Mr = 366.49Mo Kα radiation, λ = 0.71073 Å
Orthorhombic, P21212Cell parameters from 16515 reflections
a = 18.5417 (9) Åθ = 2.2–27.5°
b = 6.0597 (4) ŵ = 0.08 mm1
c = 8.9415 (5) ÅT = 173 K
V = 1004.64 (10) Å3Plate, colourless
Z = 20.31 × 0.27 × 0.12 mm
F(000) = 396
STOE IPDS II two-circle-diffractometer2058 reflections with I > 2σ(I)
Radiation source: Genix 3D IµS microfocus X-ray sourceRint = 0.053
ω scansθmax = 26.9°, θmin = 2.2°
Absorption correction: multi-scan (X-AREA; Stoe & Cie, 2001)h = −23→23
Tmin = 0.976, Tmax = 0.991k = −7→7
12723 measured reflectionsl = −11→11
2168 independent reflections
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.034w = 1/[σ2(Fo2) + (0.0482P)2 + 0.1419P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.090(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.14 e Å3
2168 reflectionsΔρmin = −0.13 e Å3
129 parametersExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.075 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
O10.41870 (7)0.5018 (2)0.60166 (17)0.0414 (3)
H10.4384 (19)0.376 (6)0.668 (4)0.097 (11)*
N10.44460 (7)0.0979 (2)0.70721 (16)0.0303 (3)
C10.45928 (9)0.0063 (3)0.85614 (19)0.0340 (4)
H1A0.4393−0.14680.86110.041*
C20.43253 (11)0.1352 (4)0.9905 (2)0.0477 (5)
H2A0.37920.14140.99010.057*
H2B0.45130.28800.98730.057*
C30.45917 (12)0.0182 (5)1.1318 (2)0.0596 (7)
H3A0.44580.10741.22040.071*
H3B0.4347−0.12641.14050.071*
C40.50000.00000.6072 (3)0.0305 (5)
H40.52170.11500.54270.037*
C50.36990 (9)0.0576 (3)0.6571 (2)0.0332 (4)
H5A0.33620.10070.73780.040*
H5B0.3634−0.10210.63800.040*
C110.35166 (9)0.1843 (3)0.5173 (2)0.0301 (4)
C120.37743 (9)0.3996 (3)0.4958 (2)0.0330 (4)
C130.35991 (10)0.5134 (3)0.3660 (2)0.0389 (4)
H130.37880.65710.34960.047*
C140.31501 (10)0.4180 (4)0.2604 (2)0.0389 (4)
H140.30320.49830.17240.047*
C150.28681 (10)0.2075 (3)0.2801 (2)0.0359 (4)
C160.30625 (9)0.0935 (3)0.4097 (2)0.0320 (4)
H160.2878−0.05110.42490.038*
C170.23790 (11)0.1007 (4)0.1658 (2)0.0452 (5)
H17A0.22780.20600.08520.068*
H17B0.19260.05710.21380.068*
H17C0.2617−0.03000.12410.068*
U11U22U33U12U13U23
O10.0387 (7)0.0295 (6)0.0559 (8)−0.0030 (6)−0.0083 (6)−0.0022 (7)
N10.0243 (7)0.0345 (7)0.0319 (7)0.0019 (6)0.0008 (5)0.0008 (6)
C10.0298 (9)0.0385 (8)0.0337 (9)0.0043 (7)0.0003 (6)0.0036 (8)
C20.0383 (10)0.0677 (14)0.0371 (10)0.0140 (10)0.0033 (9)−0.0034 (10)
C30.0501 (13)0.0951 (19)0.0335 (10)0.0207 (13)0.0048 (9)0.0018 (12)
C40.0262 (10)0.0315 (11)0.0339 (11)0.0007 (9)0.0000.000
C50.0251 (8)0.0346 (8)0.0398 (9)−0.0014 (7)−0.0005 (7)0.0043 (7)
C110.0238 (7)0.0296 (8)0.0369 (9)0.0024 (6)0.0013 (7)0.0006 (7)
C120.0274 (8)0.0301 (8)0.0414 (9)0.0012 (7)0.0003 (7)−0.0015 (8)
C130.0371 (9)0.0316 (8)0.0482 (10)0.0008 (7)0.0058 (8)0.0062 (8)
C140.0377 (9)0.0410 (10)0.0380 (9)0.0077 (8)0.0028 (8)0.0062 (8)
C150.0305 (8)0.0409 (10)0.0363 (9)0.0048 (7)0.0014 (8)−0.0021 (8)
C160.0270 (8)0.0303 (8)0.0388 (9)0.0001 (7)0.0020 (7)−0.0013 (7)
C170.0427 (10)0.0546 (11)0.0384 (10)0.0024 (9)−0.0037 (8)−0.0041 (10)
O1—C121.365 (2)C5—C111.505 (2)
O1—H11.03 (4)C5—H5A0.9900
N1—C11.468 (2)C5—H5B0.9900
N1—C51.476 (2)C11—C161.392 (3)
N1—C41.485 (2)C11—C121.403 (2)
C1—C1i1.512 (3)C12—C131.389 (3)
C1—C21.516 (3)C13—C141.386 (3)
C1—H1A1.0000C13—H130.9500
C2—C31.531 (3)C14—C151.390 (3)
C2—H2A0.9900C14—H140.9500
C2—H2B0.9900C15—C161.396 (3)
C3—C3i1.530 (4)C15—C171.512 (3)
C3—H3A0.9900C16—H160.9500
C3—H3B0.9900C17—H17A0.9800
C4—N1i1.485 (2)C17—H17B0.9800
C4—H40.9900C17—H17C0.9800
C12—O1—H1105 (2)N1—C5—H5B109.2
C1—N1—C5112.75 (14)C11—C5—H5B109.2
C1—N1—C4105.47 (13)H5A—C5—H5B107.9
C5—N1—C4113.58 (14)C16—C11—C12118.61 (17)
N1—C1—C1i101.79 (11)C16—C11—C5120.55 (15)
N1—C1—C2117.60 (15)C12—C11—C5120.78 (16)
C1i—C1—C2110.66 (14)O1—C12—C13119.01 (16)
N1—C1—H1A108.8O1—C12—C11121.19 (17)
C1i—C1—H1A108.8C13—C12—C11119.79 (17)
C2—C1—H1A108.8C14—C13—C12120.22 (17)
C1—C2—C3108.07 (17)C14—C13—H13119.9
C1—C2—H2A110.1C12—C13—H13119.9
C3—C2—H2A110.1C13—C14—C15121.48 (18)
C1—C2—H2B110.1C13—C14—H14119.3
C3—C2—H2B110.1C15—C14—H14119.3
H2A—C2—H2B108.4C14—C15—C16117.54 (18)
C3i—C3—C2112.71 (18)C14—C15—C17122.16 (19)
C3i—C3—H3A109.0C16—C15—C17120.28 (18)
C2—C3—H3A109.0C11—C16—C15122.30 (17)
C3i—C3—H3B109.0C11—C16—H16118.8
C2—C3—H3B109.0C15—C16—H16118.8
H3A—C3—H3B107.8C15—C17—H17A109.5
N1i—C4—N1106.00 (19)C15—C17—H17B109.5
N1i—C4—H4110.5H17A—C17—H17B109.5
N1—C4—H4110.5C15—C17—H17C109.5
N1—C5—C11112.24 (14)H17A—C17—H17C109.5
N1—C5—H5A109.2H17B—C17—H17C109.5
C11—C5—H5A109.2
C5—N1—C1—C1i160.26 (17)C16—C11—C12—O1176.16 (15)
C4—N1—C1—C1i35.78 (19)C5—C11—C12—O1−1.1 (2)
C5—N1—C1—C2−78.7 (2)C16—C11—C12—C13−2.7 (2)
C4—N1—C1—C2156.83 (15)C5—C11—C12—C13180.00 (15)
N1—C1—C2—C3−175.55 (19)O1—C12—C13—C14−176.61 (17)
C1i—C1—C2—C3−59.2 (2)C11—C12—C13—C142.3 (3)
C1—C2—C3—C3i53.8 (3)C12—C13—C14—C15−0.4 (3)
C1—N1—C4—N1i−14.09 (8)C13—C14—C15—C16−0.9 (3)
C5—N1—C4—N1i−138.05 (15)C13—C14—C15—C17−179.83 (18)
C1—N1—C5—C11170.22 (14)C12—C11—C16—C151.4 (3)
C4—N1—C5—C11−69.88 (17)C5—C11—C16—C15178.62 (16)
N1—C5—C11—C16144.70 (16)C14—C15—C16—C110.5 (3)
N1—C5—C11—C12−38.1 (2)C17—C15—C16—C11179.38 (17)
D—H···AD—HH···AD···AD—H···A
O1—H1···N11.03 (4)1.73 (4)2.667 (2)150 (3)
C4—H4···O1ii0.992.633.3749 (13)133
C5—H5B···O1iii0.992.633.522 (2)150
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯N11.03 (4)1.73 (4)2.667 (2)150 (3)
C4—H4⋯O1i 0.992.633.3749 (13)133
C5—H5B⋯O1ii 0.992.633.522 (2)150

Symmetry codes: (i) ; (ii) .

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