| Literature DB >> 24046631 |
Augusto Rivera1, Diego Quiroga, Jaime Ríos-Motta, Monika Kučeraková, Michal Dušek.
Abstract
The title compound, C23H30N2O4, a di-Mannich base derived from 4-meth-oxy-phenol and cis-1,2-di-amine-cyclo-hexane, has a perhydro-benzimidazolidine nucleus, in which the cyclo-hexane ring adopts a chair conformation and the heterocyclic ring has a half-chair conformation with a C-N-C-C torsion angles of -48.14 (15) and -14.57 (16)°. The mean plane of the heterocycle makes dihedral angles of 86.29 (6) and 78.92 (6)° with the pendant benzene rings. The mol-ecular structure of the title compound shows the presence of two inter-actions between the N atoms of the imidazolidine ring and the hydroxyl groups through intra-molecular O-H⋯N hydrogen bonds with graph-set motif S(6). The unobserved lone pairs of the N atoms are presumed to be disposed in a syn conformation, being only the second example of an exception to the typical 'rabbit-ears' effect in 1,2-di-amines.Entities:
Year: 2013 PMID: 24046631 PMCID: PMC3772488 DOI: 10.1107/S1600536813015092
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C23H30N2O4 | |
| Orthorhombic, | Cu |
| Hall symbol: P 2ac 2ab | Cell parameters from 3881 reflections |
| θ = 4.2–67.0° | |
| µ = 0.72 mm−1 | |
| Polygon shape, white | |
| 0.21 × 0.13 × 0.13 mm |
| Agilent Xcalibur (Atlas, Gemini ultra) diffractometer | 3491 independent reflections |
| Radiation source: Enhance Ultra (Cu) X-ray Source | 3103 reflections with |
| Mirror monochromator | |
| Detector resolution: 10.3784 pixels mm-1 | θmax = 67.1°, θmin = 3.2° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 5920 measured reflections |
| Refinement on | H atoms treated by a mixture of independent and constrained refinement |
| Weighting scheme based on measured s.u.'s | |
| (Δ/σ)max = 0.014 | |
| Δρmax = 0.11 e Å−3 | |
| 3491 reflections | Δρmin = −0.09 e Å−3 |
| 269 parameters | Extinction correction: B-C type 1 Gaussian isotropic (Becker & Coppens, 1974) |
| 1 restraint | Extinction coefficient: 1800 (300) |
| 114 constraints |
| Refinement. The refinement was carried out against all reflections. The conventional
|
| O1 | 0.9143 (2) | 0.54863 (11) | 0.19640 (4) | 0.0301 (4) | |
| O2 | 0.5296 (2) | 0.11931 (11) | 0.22143 (5) | 0.0331 (4) | |
| O3 | 1.1573 (2) | 0.56734 (11) | 0.02995 (4) | 0.0307 (4) | |
| O4 | 0.75546 (19) | 0.25342 (11) | −0.08969 (5) | 0.0323 (4) | |
| N1 | 0.6253 (2) | 0.60135 (11) | 0.13114 (5) | 0.0214 (4) | |
| N2 | 0.7838 (2) | 0.63852 (12) | 0.05764 (5) | 0.0236 (4) | |
| C1 | 0.5156 (3) | 0.31779 (14) | 0.18880 (5) | 0.0235 (5) | |
| C2 | 0.6158 (3) | 0.22830 (15) | 0.21334 (6) | 0.0263 (5) | |
| C3 | 0.8117 (3) | 0.44415 (15) | 0.20127 (6) | 0.0239 (5) | |
| C4 | 0.8426 (3) | 0.51409 (14) | −0.01265 (5) | 0.0227 (4) | |
| C5 | 0.7086 (3) | 0.74987 (14) | 0.07934 (6) | 0.0240 (5) | |
| C6 | 1.0495 (3) | 0.49232 (15) | 0.00056 (6) | 0.0249 (5) | |
| C7 | 0.8898 (3) | 0.80893 (16) | 0.10624 (6) | 0.0291 (5) | |
| C8 | 0.6101 (3) | 0.42686 (14) | 0.18311 (5) | 0.0225 (5) | |
| C9 | 0.7333 (3) | 0.62223 (15) | 0.00643 (6) | 0.0241 (5) | |
| C10 | 1.0459 (3) | 0.31475 (16) | −0.04591 (6) | 0.0299 (5) | |
| C11 | 0.4897 (3) | 0.52615 (15) | 0.16028 (6) | 0.0232 (5) | |
| C12 | 1.1484 (3) | 0.39175 (15) | −0.01597 (6) | 0.0285 (5) | |
| C13 | 0.8412 (3) | 0.33593 (14) | −0.05968 (6) | 0.0253 (5) | |
| C14 | 0.7399 (3) | 0.43469 (14) | −0.04254 (6) | 0.0234 (5) | |
| C15 | 0.3383 (3) | 0.09474 (15) | 0.19795 (7) | 0.0318 (5) | |
| C16 | 0.6655 (3) | 0.84873 (15) | 0.17768 (6) | 0.0296 (5) | |
| C17 | 0.6964 (3) | 0.54281 (14) | 0.08724 (6) | 0.0246 (5) | |
| C18 | 0.4760 (3) | 0.79993 (15) | 0.15171 (6) | 0.0267 (5) | |
| C19 | 0.8144 (3) | 0.24615 (15) | 0.23194 (6) | 0.0277 (5) | |
| C20 | 0.8172 (3) | 0.90189 (16) | 0.14189 (7) | 0.0339 (6) | |
| C21 | 0.5386 (3) | 0.26108 (18) | −0.09885 (7) | 0.0377 (6) | |
| C22 | 0.9116 (3) | 0.35333 (16) | 0.22549 (6) | 0.0273 (5) | |
| C23 | 0.5338 (3) | 0.71070 (14) | 0.11279 (6) | 0.0230 (5) | |
| H1c1 | 0.379468 | 0.30444 | 0.17556 | 0.0282* | |
| H1c5 | 0.65943 | 0.806783 | 0.0566 | 0.0288* | |
| H1c7 | 0.969757 | 0.750452 | 0.122842 | 0.0349* | |
| H2c7 | 0.983602 | 0.843718 | 0.083447 | 0.0349* | |
| H1c9 | 0.777998 | 0.689708 | −0.011408 | 0.0289* | |
| H2c9 | 0.585279 | 0.613214 | 0.002786 | 0.0289* | |
| H1c10 | 1.11646 | 0.245973 | −0.057325 | 0.0359* | |
| H1c11 | 0.380664 | 0.494706 | 0.140473 | 0.0278* | |
| H2c11 | 0.424373 | 0.572215 | 0.184908 | 0.0278* | |
| H1c12 | 1.289471 | 0.375787 | −0.006445 | 0.0342* | |
| H1c14 | 0.597307 | 0.448657 | −0.051337 | 0.028* | |
| H1c15 | 0.291175 | 0.017919 | 0.206897 | 0.0381* | |
| H2c15 | 0.235901 | 0.151753 | 0.207273 | 0.0381* | |
| H3c15 | 0.358284 | 0.097924 | 0.163784 | 0.0381* | |
| H1c16 | 0.621918 | 0.907719 | 0.200132 | 0.0355* | |
| H2c16 | 0.733433 | 0.786893 | 0.195069 | 0.0355* | |
| H1c17 | 0.579091 | 0.508786 | 0.070973 | 0.0295* | |
| H2c17 | 0.804762 | 0.487985 | 0.095061 | 0.0295* | |
| H1c18 | 0.398726 | 0.863134 | 0.137522 | 0.0321* | |
| H2c18 | 0.383947 | 0.763989 | 0.174577 | 0.0321* | |
| H1c19 | 0.883769 | 0.184533 | 0.249162 | 0.0333* | |
| H1c20 | 0.935569 | 0.932931 | 0.158751 | 0.0407* | |
| H2c20 | 0.749972 | 0.964503 | 0.124838 | 0.0407* | |
| H1c21 | 0.49724 | 0.198114 | −0.119656 | 0.0453* | |
| H2c21 | 0.463462 | 0.255624 | −0.069084 | 0.0453* | |
| H3c21 | 0.50801 | 0.334683 | −0.114005 | 0.0453* | |
| H1c22 | 1.049675 | 0.365199 | 0.237874 | 0.0327* | |
| H1c23 | 0.400514 | 0.701537 | 0.097533 | 0.0276* | |
| H1o3 | 1.050 (3) | 0.6060 (18) | 0.0456 (7) | 0.0369* | |
| H1o1 | 0.834 (3) | 0.5936 (17) | 0.1758 (7) | 0.0361* |
| O1 | 0.0312 (7) | 0.0281 (7) | 0.0309 (6) | −0.0030 (6) | −0.0068 (5) | 0.0021 (5) |
| O2 | 0.0438 (7) | 0.0216 (6) | 0.0340 (6) | 0.0000 (6) | −0.0026 (6) | 0.0074 (5) |
| O3 | 0.0261 (6) | 0.0333 (7) | 0.0328 (6) | −0.0028 (6) | −0.0018 (5) | −0.0048 (5) |
| O4 | 0.0330 (7) | 0.0310 (7) | 0.0330 (6) | −0.0036 (6) | 0.0062 (5) | −0.0123 (5) |
| N1 | 0.0260 (7) | 0.0180 (6) | 0.0202 (6) | 0.0011 (6) | 0.0004 (5) | −0.0003 (5) |
| N2 | 0.0321 (8) | 0.0189 (7) | 0.0197 (6) | 0.0012 (6) | −0.0010 (6) | −0.0011 (5) |
| C1 | 0.0268 (9) | 0.0236 (9) | 0.0202 (7) | 0.0013 (7) | 0.0010 (7) | 0.0005 (6) |
| C2 | 0.0346 (10) | 0.0240 (9) | 0.0204 (7) | 0.0042 (8) | 0.0044 (7) | 0.0022 (6) |
| C3 | 0.0284 (9) | 0.0239 (8) | 0.0194 (7) | 0.0018 (7) | −0.0002 (6) | −0.0010 (6) |
| C4 | 0.0281 (9) | 0.0227 (8) | 0.0174 (7) | 0.0002 (8) | 0.0035 (7) | 0.0020 (6) |
| C5 | 0.0348 (9) | 0.0177 (8) | 0.0195 (7) | 0.0026 (8) | −0.0015 (7) | 0.0017 (6) |
| C6 | 0.0268 (8) | 0.0263 (9) | 0.0217 (7) | −0.0038 (7) | 0.0019 (7) | 0.0006 (6) |
| C7 | 0.0325 (10) | 0.0258 (9) | 0.0289 (8) | −0.0052 (8) | 0.0034 (7) | −0.0014 (7) |
| C8 | 0.0269 (9) | 0.0240 (8) | 0.0165 (7) | 0.0029 (7) | 0.0011 (6) | −0.0014 (6) |
| C9 | 0.0283 (9) | 0.0239 (8) | 0.0201 (7) | 0.0014 (7) | −0.0007 (6) | 0.0011 (6) |
| C10 | 0.0302 (9) | 0.0242 (9) | 0.0354 (9) | 0.0007 (8) | 0.0105 (8) | −0.0022 (7) |
| C11 | 0.0240 (8) | 0.0235 (8) | 0.0220 (7) | 0.0001 (7) | −0.0007 (6) | 0.0015 (6) |
| C12 | 0.0255 (9) | 0.0282 (9) | 0.0319 (8) | 0.0009 (8) | 0.0032 (7) | 0.0037 (7) |
| C13 | 0.0300 (9) | 0.0223 (8) | 0.0237 (8) | −0.0048 (7) | 0.0062 (7) | −0.0014 (6) |
| C14 | 0.0242 (8) | 0.0253 (8) | 0.0206 (7) | −0.0013 (7) | 0.0026 (6) | 0.0005 (6) |
| C15 | 0.0360 (10) | 0.0245 (9) | 0.0349 (9) | −0.0012 (8) | 0.0039 (8) | 0.0040 (7) |
| C16 | 0.0400 (10) | 0.0239 (8) | 0.0249 (8) | 0.0025 (8) | −0.0039 (8) | −0.0069 (6) |
| C17 | 0.0313 (9) | 0.0208 (8) | 0.0217 (7) | 0.0035 (7) | 0.0017 (7) | −0.0003 (6) |
| C18 | 0.0305 (9) | 0.0222 (8) | 0.0274 (8) | 0.0053 (8) | 0.0010 (7) | −0.0010 (7) |
| C19 | 0.0334 (10) | 0.0275 (9) | 0.0222 (7) | 0.0091 (8) | 0.0003 (7) | 0.0035 (7) |
| C20 | 0.0425 (11) | 0.0244 (9) | 0.0348 (9) | −0.0045 (9) | −0.0052 (8) | −0.0047 (7) |
| C21 | 0.0345 (10) | 0.0397 (11) | 0.0389 (10) | −0.0068 (9) | 0.0015 (8) | −0.0152 (8) |
| C22 | 0.0255 (9) | 0.0341 (9) | 0.0223 (8) | 0.0052 (8) | −0.0024 (7) | 0.0008 (7) |
| C23 | 0.0248 (9) | 0.0202 (8) | 0.0239 (7) | 0.0020 (7) | −0.0033 (7) | 0.0002 (6) |
| O1—C3 | 1.368 (2) | C9—H1c9 | 0.96 |
| O1—H1o1 | 0.93 (2) | C9—H2c9 | 0.96 |
| O2—C2 | 1.380 (2) | C10—C12 | 1.378 (3) |
| O2—C15 | 1.418 (2) | C10—C13 | 1.389 (3) |
| O3—C6 | 1.371 (2) | C10—H1c10 | 0.96 |
| O3—H1o3 | 0.93 (2) | C11—H1c11 | 0.96 |
| O4—C13 | 1.373 (2) | C11—H2c11 | 0.96 |
| O4—C21 | 1.417 (2) | C12—H1c12 | 0.96 |
| N1—C11 | 1.466 (2) | C13—C14 | 1.385 (2) |
| N1—C17 | 1.465 (2) | C14—H1c14 | 0.96 |
| N1—C23 | 1.470 (2) | C15—H1c15 | 0.96 |
| N2—C5 | 1.487 (2) | C15—H2c15 | 0.96 |
| N2—C9 | 1.473 (2) | C15—H3c15 | 0.96 |
| N2—C17 | 1.478 (2) | C16—C18 | 1.520 (3) |
| C1—C2 | 1.386 (2) | C16—C20 | 1.519 (3) |
| C1—C8 | 1.393 (2) | C16—H1c16 | 0.96 |
| C1—H1c1 | 0.96 | C16—H2c16 | 0.96 |
| C2—C19 | 1.390 (3) | C17—H1c17 | 0.96 |
| C3—C8 | 1.402 (2) | C17—H2c17 | 0.96 |
| C3—C22 | 1.392 (2) | C18—C23 | 1.532 (2) |
| C4—C6 | 1.399 (3) | C18—H1c18 | 0.96 |
| C4—C9 | 1.515 (2) | C18—H2c18 | 0.96 |
| C4—C14 | 1.395 (2) | C19—C22 | 1.384 (3) |
| C5—C7 | 1.538 (2) | C19—H1c19 | 0.96 |
| C5—C23 | 1.524 (2) | C20—H1c20 | 0.96 |
| C5—H1c5 | 0.96 | C20—H2c20 | 0.96 |
| C6—C12 | 1.390 (2) | C21—H1c21 | 0.96 |
| C7—C20 | 1.525 (3) | C21—H2c21 | 0.96 |
| C7—H1c7 | 0.96 | C21—H3c21 | 0.96 |
| C7—H2c7 | 0.96 | C22—H1c22 | 0.96 |
| C8—C11 | 1.511 (2) | C23—H1c23 | 0.96 |
| C3—O1—H1o1 | 106.0 (13) | C6—C12—H1c12 | 119.71 |
| C2—O2—C15 | 116.72 (13) | C10—C12—H1c12 | 119.71 |
| C6—O3—H1o3 | 101.6 (13) | O4—C13—C10 | 115.28 (15) |
| C13—O4—C21 | 117.40 (14) | O4—C13—C14 | 125.39 (16) |
| C11—N1—C17 | 112.27 (12) | C10—C13—C14 | 119.32 (16) |
| C11—N1—C23 | 116.87 (13) | C4—C14—C13 | 120.79 (16) |
| C17—N1—C23 | 102.81 (12) | C4—C14—H1c14 | 119.6 |
| C5—N2—C9 | 115.42 (13) | C13—C14—H1c14 | 119.6 |
| C5—N2—C17 | 106.39 (12) | O2—C15—H1c15 | 109.47 |
| C9—N2—C17 | 111.24 (13) | O2—C15—H2c15 | 109.47 |
| C2—C1—C8 | 120.84 (16) | O2—C15—H3c15 | 109.47 |
| C2—C1—H1c1 | 119.58 | H1c15—C15—H2c15 | 109.47 |
| C8—C1—H1c1 | 119.58 | H1c15—C15—H3c15 | 109.47 |
| O2—C2—C1 | 123.98 (16) | H2c15—C15—H3c15 | 109.47 |
| O2—C2—C19 | 116.01 (15) | C18—C16—C20 | 110.30 (14) |
| C1—C2—C19 | 120.01 (16) | C18—C16—H1c16 | 109.47 |
| O1—C3—C8 | 122.03 (15) | C18—C16—H2c16 | 109.47 |
| O1—C3—C22 | 118.37 (15) | C20—C16—H1c16 | 109.47 |
| C8—C3—C22 | 119.60 (15) | C20—C16—H2c16 | 109.47 |
| C6—C4—C9 | 119.44 (14) | H1c16—C16—H2c16 | 108.63 |
| C6—C4—C14 | 119.29 (15) | N1—C17—N2 | 104.22 (12) |
| C9—C4—C14 | 121.26 (15) | N1—C17—H1c17 | 109.47 |
| N2—C5—C7 | 109.08 (14) | N1—C17—H2c17 | 109.47 |
| N2—C5—C23 | 103.65 (13) | N2—C17—H1c17 | 109.47 |
| N2—C5—H1c5 | 114.64 | N2—C17—H2c17 | 109.47 |
| C7—C5—C23 | 112.79 (13) | H1c17—C17—H2c17 | 114.25 |
| C7—C5—H1c5 | 105.82 | C16—C18—C23 | 112.72 (15) |
| C23—C5—H1c5 | 111.05 | C16—C18—H1c18 | 109.47 |
| O3—C6—C4 | 121.62 (15) | C16—C18—H2c18 | 109.47 |
| O3—C6—C12 | 118.85 (16) | C23—C18—H1c18 | 109.47 |
| C4—C6—C12 | 119.52 (16) | C23—C18—H2c18 | 109.47 |
| C5—C7—C20 | 113.00 (15) | H1c18—C18—H2c18 | 106.02 |
| C5—C7—H1c7 | 109.47 | C2—C19—C22 | 119.58 (16) |
| C5—C7—H2c7 | 109.47 | C2—C19—H1c19 | 120.21 |
| C20—C7—H1c7 | 109.47 | C22—C19—H1c19 | 120.21 |
| C20—C7—H2c7 | 109.47 | C7—C20—C16 | 110.14 (15) |
| H1c7—C7—H2c7 | 105.7 | C7—C20—H1c20 | 109.47 |
| C1—C8—C3 | 119.06 (15) | C7—C20—H2c20 | 109.47 |
| C1—C8—C11 | 119.71 (15) | C16—C20—H1c20 | 109.47 |
| C3—C8—C11 | 121.14 (15) | C16—C20—H2c20 | 109.47 |
| N2—C9—C4 | 109.87 (13) | H1c20—C20—H2c20 | 108.8 |
| N2—C9—H1c9 | 109.47 | O4—C21—H1c21 | 109.47 |
| N2—C9—H2c9 | 109.47 | O4—C21—H2c21 | 109.47 |
| C4—C9—H1c9 | 109.47 | O4—C21—H3c21 | 109.47 |
| C4—C9—H2c9 | 109.47 | H1c21—C21—H2c21 | 109.47 |
| H1c9—C9—H2c9 | 109.07 | H1c21—C21—H3c21 | 109.47 |
| C12—C10—C13 | 120.47 (16) | H2c21—C21—H3c21 | 109.47 |
| C12—C10—H1c10 | 119.76 | C3—C22—C19 | 120.89 (16) |
| C13—C10—H1c10 | 119.76 | C3—C22—H1c22 | 119.56 |
| N1—C11—C8 | 111.62 (14) | C19—C22—H1c22 | 119.56 |
| N1—C11—H1c11 | 109.47 | N1—C23—C5 | 99.62 (13) |
| N1—C11—H2c11 | 109.47 | N1—C23—C18 | 114.52 (13) |
| C8—C11—H1c11 | 109.47 | N1—C23—H1c23 | 114.61 |
| C8—C11—H2c11 | 109.47 | C5—C23—C18 | 114.50 (14) |
| H1c11—C11—H2c11 | 107.24 | C5—C23—H1c23 | 114.63 |
| C6—C12—C10 | 120.58 (17) | C18—C23—H1c23 | 99.77 |
| H··· | ||||
| O3—H1 | 0.93 (2) | 1.78 (2) | 2.6443 (19) | 154.4 (19) |
| O1—H1 | 0.93 (2) | 1.83 (2) | 2.6638 (19) | 148.8 (18) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H1 | 0.93 (2) | 1.78 (2) | 2.6443 (19) | 154.4 (19) |
| O1—H1 | 0.93 (2) | 1.83 (2) | 2.6638 (19) | 148.8 (18) |